vasputils 0.0.9 → 0.0.10
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- data/VERSION +1 -1
- data/bin/checkvasp +6 -5
- data/bin/latticeconstants +13 -8
- data/bin/qsubvasp +5 -5
- data/bin/rmvaspout +40 -0
- data/bin/runvasp +5 -6
- data/bin/symposcar +38 -28
- data/lib/vasputils.rb +11 -0
- data/lib/vasputils/incar.rb +3 -1
- data/lib/vasputils/kpoints.rb +3 -1
- data/lib/vasputils/outcar.rb +46 -31
- data/lib/vasputils/poscar.rb +3 -1
- data/lib/vasputils/potcar.rb +3 -1
- data/lib/vasputils/vaspdir.rb +8 -11
- data/lib/vasputils/{vaspgeomopt.rb → vaspgeometryoptimizer.rb} +6 -5
- data/memo.txt +9 -1
- data/test/test_incar.rb +5 -4
- data/test/test_kpoints.rb +7 -6
- data/test/test_outcar.rb +25 -24
- data/test/test_poscar.rb +11 -10
- data/test/test_potcar.rb +7 -6
- data/test/test_vaspdir.rb +10 -10
- data/test/{test_vaspgeomopt.rb → test_vaspgeometryoptimizer.rb} +21 -20
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/ended-Iter1/try00/CONTCAR +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/ended-Iter1/try00/INCAR +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/ended-Iter1/try00/KPOINTS +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/ended-Iter1/try00/OUTCAR +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/ended-Iter1/try00/POSCAR +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/ended-Iter1/try00/POTCAR +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/ended-Iter1/try01/INCAR +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/ended-Iter1/try01/KPOINTS +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/ended-Iter1/try01/OUTCAR +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/ended-Iter1/try01/POSCAR +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/ended-Iter1/try01/POTCAR +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/ended-Iter2/try00/CONTCAR +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/ended-Iter2/try00/INCAR +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/ended-Iter2/try00/KPOINTS +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/ended-Iter2/try00/OUTCAR +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/ended-Iter2/try00/POSCAR +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/ended-Iter2/try00/POTCAR +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/ended-Iter2/try01/INCAR +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/ended-Iter2/try01/KPOINTS +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/ended-Iter2/try01/OUTCAR +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/ended-Iter2/try01/POSCAR +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/ended-Iter2/try01/POTCAR +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/not-yet/try00/INCAR +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/not-yet/try00/KPOINTS +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/not-yet/try00/POSCAR +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/not-yet/try00/POTCAR +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/prepare_next/try00/CHG +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/prepare_next/try00/CHGCAR +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/prepare_next/try00/CONTCAR +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/prepare_next/try00/DOSCAR +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/prepare_next/try00/EIGENVAL +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/prepare_next/try00/INCAR +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/prepare_next/try00/KPOINTS +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/prepare_next/try00/OSZICAR +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/prepare_next/try00/OUTCAR +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/prepare_next/try00/PCDAT +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/prepare_next/try00/POSCAR +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/prepare_next/try00/POTCAR +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/prepare_next/try00/WAVECAR +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/prepare_next/try00/XDATCAR +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/prepare_next/try00/vasprun.xml +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/started/try00/INCAR +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/started/try00/KPOINTS +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/started/try00/POSCAR +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/started/try00/POTCAR +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/till01/try00/CONTCAR +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/till01/try00/INCAR +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/till01/try00/KPOINTS +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/till01/try00/OUTCAR +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/till01/try00/POSCAR +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/till01/try00/POTCAR +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/till01/try01/INCAR +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/till01/try01/KPOINTS +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/till01/try01/POSCAR +0 -0
- data/test/{vaspgeomopt → vaspgeometryoptimizer}/till01/try01/POTCAR +0 -0
- data/vasputils.gemspec +61 -63
- metadata +82 -84
- data/bin/addVolumeToten.rb +0 -19
- data/lib/vasputils/calcinspector.rb +0 -24
- data/test/test_calcinspector.rb +0 -53
data/bin/addVolumeToten.rb
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#! /usr/bin/ruby
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#標準入力から文字列リストを受け取り、
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#ファイル名と思しきものがあれば、それに最終的な volume と TOTEN を追加する。
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#CONTCAR も指定できるが、同じディレクトリに OUTCAR が存在する必要がある。
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require "vasputils/outcarparser.rb"
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STDIN.each do |line|
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file = line.strip.sub( 'CONTCAR', 'OUTCAR' )
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if File.exist?( file )
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outcar = ParseOutcar.new( file )
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volume = outcar.volumes[-1]
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toten = outcar.totens[-1]
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printf( "%s, %6.2f, %f\n", line.chomp, volume, toten )
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else
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puts line
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end
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end
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#! /usr/bin/env ruby
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# coding: utf-8
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# 計算の状態を解析するクラス。
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class CalcInspector
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#
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#def initialize
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#end
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# 引数 calc で渡された計算の状態を返す。
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# calc は以下のメソッドを持つ必要がある。
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# - started?
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# - normal_ended?
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# - to_be_continued?
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def self.inspect(calc)
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return "YET" unless calc.started?
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return "STARTED" unless calc.normal_ended?
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return "NEXT" if calc.to_be_continued?
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return "FINISHED"
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#raise "must not occur"
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end
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end
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data/test/test_calcinspector.rb
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#! /usr/bin/env ruby
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# coding: utf-8
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require "test/unit"
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require "vasputils/calcinspector.rb"
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class YetCalc
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def started? ; return false; end
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def normal_ended? ; return false; end
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def to_be_continued?; return false; end
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def finished? ; return false; end
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end
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class StartedCalc
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def started? ; return true ; end
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def normal_ended? ; return false; end
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def to_be_continued?; return false; end
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def finished? ; return false; end
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end
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class NextCalc
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def started? ; return true ; end
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def normal_ended? ; return true ; end
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def to_be_continued?; return true ; end
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def finished? ; return false; end
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end
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class FinishedCalc
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def started? ; return true ; end
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def normal_ended? ; return true ; end
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def to_be_continued?; return false; end
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def finished? ; return true ; end
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end
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class TC_ListCalculation < Test::Unit::TestCase
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def setup
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@dc00 = YetCalc.new
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@dc01 = StartedCalc.new
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@dc02 = NextCalc.new
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@dc03 = FinishedCalc.new
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end
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def test_self_inspect
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assert_equal("YET", CalcInspector.inspect(@dc00))
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assert_equal("STARTED", CalcInspector.inspect(@dc01))
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assert_equal("NEXT", CalcInspector.inspect(@dc02))
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assert_equal("FINISHED", CalcInspector.inspect(@dc03))
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end
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end
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