vasputils 0.0.9 → 0.0.10

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Files changed (83) hide show
  1. data/VERSION +1 -1
  2. data/bin/checkvasp +6 -5
  3. data/bin/latticeconstants +13 -8
  4. data/bin/qsubvasp +5 -5
  5. data/bin/rmvaspout +40 -0
  6. data/bin/runvasp +5 -6
  7. data/bin/symposcar +38 -28
  8. data/lib/vasputils.rb +11 -0
  9. data/lib/vasputils/incar.rb +3 -1
  10. data/lib/vasputils/kpoints.rb +3 -1
  11. data/lib/vasputils/outcar.rb +46 -31
  12. data/lib/vasputils/poscar.rb +3 -1
  13. data/lib/vasputils/potcar.rb +3 -1
  14. data/lib/vasputils/vaspdir.rb +8 -11
  15. data/lib/vasputils/{vaspgeomopt.rb → vaspgeometryoptimizer.rb} +6 -5
  16. data/memo.txt +9 -1
  17. data/test/test_incar.rb +5 -4
  18. data/test/test_kpoints.rb +7 -6
  19. data/test/test_outcar.rb +25 -24
  20. data/test/test_poscar.rb +11 -10
  21. data/test/test_potcar.rb +7 -6
  22. data/test/test_vaspdir.rb +10 -10
  23. data/test/{test_vaspgeomopt.rb → test_vaspgeometryoptimizer.rb} +21 -20
  24. data/test/{vaspgeomopt → vaspgeometryoptimizer}/ended-Iter1/try00/CONTCAR +0 -0
  25. data/test/{vaspgeomopt → vaspgeometryoptimizer}/ended-Iter1/try00/INCAR +0 -0
  26. data/test/{vaspgeomopt → vaspgeometryoptimizer}/ended-Iter1/try00/KPOINTS +0 -0
  27. data/test/{vaspgeomopt → vaspgeometryoptimizer}/ended-Iter1/try00/OUTCAR +0 -0
  28. data/test/{vaspgeomopt → vaspgeometryoptimizer}/ended-Iter1/try00/POSCAR +0 -0
  29. data/test/{vaspgeomopt → vaspgeometryoptimizer}/ended-Iter1/try00/POTCAR +0 -0
  30. data/test/{vaspgeomopt → vaspgeometryoptimizer}/ended-Iter1/try01/INCAR +0 -0
  31. data/test/{vaspgeomopt → vaspgeometryoptimizer}/ended-Iter1/try01/KPOINTS +0 -0
  32. data/test/{vaspgeomopt → vaspgeometryoptimizer}/ended-Iter1/try01/OUTCAR +0 -0
  33. data/test/{vaspgeomopt → vaspgeometryoptimizer}/ended-Iter1/try01/POSCAR +0 -0
  34. data/test/{vaspgeomopt → vaspgeometryoptimizer}/ended-Iter1/try01/POTCAR +0 -0
  35. data/test/{vaspgeomopt → vaspgeometryoptimizer}/ended-Iter2/try00/CONTCAR +0 -0
  36. data/test/{vaspgeomopt → vaspgeometryoptimizer}/ended-Iter2/try00/INCAR +0 -0
  37. data/test/{vaspgeomopt → vaspgeometryoptimizer}/ended-Iter2/try00/KPOINTS +0 -0
  38. data/test/{vaspgeomopt → vaspgeometryoptimizer}/ended-Iter2/try00/OUTCAR +0 -0
  39. data/test/{vaspgeomopt → vaspgeometryoptimizer}/ended-Iter2/try00/POSCAR +0 -0
  40. data/test/{vaspgeomopt → vaspgeometryoptimizer}/ended-Iter2/try00/POTCAR +0 -0
  41. data/test/{vaspgeomopt → vaspgeometryoptimizer}/ended-Iter2/try01/INCAR +0 -0
  42. data/test/{vaspgeomopt → vaspgeometryoptimizer}/ended-Iter2/try01/KPOINTS +0 -0
  43. data/test/{vaspgeomopt → vaspgeometryoptimizer}/ended-Iter2/try01/OUTCAR +0 -0
  44. data/test/{vaspgeomopt → vaspgeometryoptimizer}/ended-Iter2/try01/POSCAR +0 -0
  45. data/test/{vaspgeomopt → vaspgeometryoptimizer}/ended-Iter2/try01/POTCAR +0 -0
  46. data/test/{vaspgeomopt → vaspgeometryoptimizer}/not-yet/try00/INCAR +0 -0
  47. data/test/{vaspgeomopt → vaspgeometryoptimizer}/not-yet/try00/KPOINTS +0 -0
  48. data/test/{vaspgeomopt → vaspgeometryoptimizer}/not-yet/try00/POSCAR +0 -0
  49. data/test/{vaspgeomopt → vaspgeometryoptimizer}/not-yet/try00/POTCAR +0 -0
  50. data/test/{vaspgeomopt → vaspgeometryoptimizer}/prepare_next/try00/CHG +0 -0
  51. data/test/{vaspgeomopt → vaspgeometryoptimizer}/prepare_next/try00/CHGCAR +0 -0
  52. data/test/{vaspgeomopt → vaspgeometryoptimizer}/prepare_next/try00/CONTCAR +0 -0
  53. data/test/{vaspgeomopt → vaspgeometryoptimizer}/prepare_next/try00/DOSCAR +0 -0
  54. data/test/{vaspgeomopt → vaspgeometryoptimizer}/prepare_next/try00/EIGENVAL +0 -0
  55. data/test/{vaspgeomopt → vaspgeometryoptimizer}/prepare_next/try00/INCAR +0 -0
  56. data/test/{vaspgeomopt → vaspgeometryoptimizer}/prepare_next/try00/KPOINTS +0 -0
  57. data/test/{vaspgeomopt → vaspgeometryoptimizer}/prepare_next/try00/OSZICAR +0 -0
  58. data/test/{vaspgeomopt → vaspgeometryoptimizer}/prepare_next/try00/OUTCAR +0 -0
  59. data/test/{vaspgeomopt → vaspgeometryoptimizer}/prepare_next/try00/PCDAT +0 -0
  60. data/test/{vaspgeomopt → vaspgeometryoptimizer}/prepare_next/try00/POSCAR +0 -0
  61. data/test/{vaspgeomopt → vaspgeometryoptimizer}/prepare_next/try00/POTCAR +0 -0
  62. data/test/{vaspgeomopt → vaspgeometryoptimizer}/prepare_next/try00/WAVECAR +0 -0
  63. data/test/{vaspgeomopt → vaspgeometryoptimizer}/prepare_next/try00/XDATCAR +0 -0
  64. data/test/{vaspgeomopt → vaspgeometryoptimizer}/prepare_next/try00/vasprun.xml +0 -0
  65. data/test/{vaspgeomopt → vaspgeometryoptimizer}/started/try00/INCAR +0 -0
  66. data/test/{vaspgeomopt → vaspgeometryoptimizer}/started/try00/KPOINTS +0 -0
  67. data/test/{vaspgeomopt → vaspgeometryoptimizer}/started/try00/POSCAR +0 -0
  68. data/test/{vaspgeomopt → vaspgeometryoptimizer}/started/try00/POTCAR +0 -0
  69. data/test/{vaspgeomopt → vaspgeometryoptimizer}/till01/try00/CONTCAR +0 -0
  70. data/test/{vaspgeomopt → vaspgeometryoptimizer}/till01/try00/INCAR +0 -0
  71. data/test/{vaspgeomopt → vaspgeometryoptimizer}/till01/try00/KPOINTS +0 -0
  72. data/test/{vaspgeomopt → vaspgeometryoptimizer}/till01/try00/OUTCAR +0 -0
  73. data/test/{vaspgeomopt → vaspgeometryoptimizer}/till01/try00/POSCAR +0 -0
  74. data/test/{vaspgeomopt → vaspgeometryoptimizer}/till01/try00/POTCAR +0 -0
  75. data/test/{vaspgeomopt → vaspgeometryoptimizer}/till01/try01/INCAR +0 -0
  76. data/test/{vaspgeomopt → vaspgeometryoptimizer}/till01/try01/KPOINTS +0 -0
  77. data/test/{vaspgeomopt → vaspgeometryoptimizer}/till01/try01/POSCAR +0 -0
  78. data/test/{vaspgeomopt → vaspgeometryoptimizer}/till01/try01/POTCAR +0 -0
  79. data/vasputils.gemspec +61 -63
  80. metadata +82 -84
  81. data/bin/addVolumeToten.rb +0 -19
  82. data/lib/vasputils/calcinspector.rb +0 -24
  83. data/test/test_calcinspector.rb +0 -53
@@ -1,19 +0,0 @@
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- #! /usr/bin/ruby
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-
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- #標準入力から文字列リストを受け取り、
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- #ファイル名と思しきものがあれば、それに最終的な volume と TOTEN を追加する。
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- #CONTCAR も指定できるが、同じディレクトリに OUTCAR が存在する必要がある。
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-
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- require "vasputils/outcarparser.rb"
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-
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- STDIN.each do |line|
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- file = line.strip.sub( 'CONTCAR', 'OUTCAR' )
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- if File.exist?( file )
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- outcar = ParseOutcar.new( file )
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- volume = outcar.volumes[-1]
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- toten = outcar.totens[-1]
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- printf( "%s, %6.2f, %f\n", line.chomp, volume, toten )
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- else
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- puts line
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- end
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- end
@@ -1,24 +0,0 @@
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- #! /usr/bin/env ruby
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- # coding: utf-8
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-
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- # 計算の状態を解析するクラス。
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- class CalcInspector
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- #
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- #def initialize
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- #end
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-
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- # 引数 calc で渡された計算の状態を返す。
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- # calc は以下のメソッドを持つ必要がある。
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- # - started?
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- # - normal_ended?
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- # - to_be_continued?
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- def self.inspect(calc)
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- return "YET" unless calc.started?
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- return "STARTED" unless calc.normal_ended?
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- return "NEXT" if calc.to_be_continued?
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- return "FINISHED"
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- #raise "must not occur"
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- end
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-
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- end
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-
@@ -1,53 +0,0 @@
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- #! /usr/bin/env ruby
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- # coding: utf-8
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-
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- require "test/unit"
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- require "vasputils/calcinspector.rb"
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-
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- class YetCalc
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- def started? ; return false; end
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- def normal_ended? ; return false; end
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- def to_be_continued?; return false; end
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- def finished? ; return false; end
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- end
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-
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- class StartedCalc
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- def started? ; return true ; end
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- def normal_ended? ; return false; end
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- def to_be_continued?; return false; end
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- def finished? ; return false; end
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- end
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-
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- class NextCalc
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- def started? ; return true ; end
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- def normal_ended? ; return true ; end
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- def to_be_continued?; return true ; end
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- def finished? ; return false; end
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- end
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-
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- class FinishedCalc
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- def started? ; return true ; end
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- def normal_ended? ; return true ; end
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- def to_be_continued?; return false; end
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- def finished? ; return true ; end
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- end
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-
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- class TC_ListCalculation < Test::Unit::TestCase
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- def setup
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- @dc00 = YetCalc.new
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- @dc01 = StartedCalc.new
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- @dc02 = NextCalc.new
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- @dc03 = FinishedCalc.new
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- end
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-
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- def test_self_inspect
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- assert_equal("YET", CalcInspector.inspect(@dc00))
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- assert_equal("STARTED", CalcInspector.inspect(@dc01))
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- assert_equal("NEXT", CalcInspector.inspect(@dc02))
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- assert_equal("FINISHED", CalcInspector.inspect(@dc03))
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- end
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-
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-
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-
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- end
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-