valkyrie 2.1.1 → 2.1.2
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- checksums.yaml +4 -4
- data/.circleci/config.yml +33 -29
- data/.lando.yml +40 -0
- data/.rubocop.yml +4 -1
- data/.tool-versions +1 -1
- data/CHANGELOG.md +26 -0
- data/README.md +19 -47
- data/Rakefile +21 -20
- data/db/config.yml +3 -10
- data/lib/generators/valkyrie/resource_generator.rb +3 -3
- data/lib/valkyrie.rb +13 -13
- data/lib/valkyrie/change_set.rb +3 -3
- data/lib/valkyrie/id.rb +14 -14
- data/lib/valkyrie/indexers/access_controls_indexer.rb +17 -17
- data/lib/valkyrie/persistence/fedora/list_node.rb +43 -43
- data/lib/valkyrie/persistence/fedora/ordered_list.rb +90 -90
- data/lib/valkyrie/persistence/fedora/ordered_reader.rb +5 -5
- data/lib/valkyrie/persistence/fedora/permissive_schema.rb +1 -1
- data/lib/valkyrie/persistence/fedora/persister.rb +80 -82
- data/lib/valkyrie/persistence/fedora/persister/model_converter.rb +15 -15
- data/lib/valkyrie/persistence/fedora/persister/orm_converter.rb +38 -18
- data/lib/valkyrie/persistence/fedora/query_service.rb +38 -40
- data/lib/valkyrie/persistence/memory/persister.rb +33 -33
- data/lib/valkyrie/persistence/memory/query_service.rb +26 -30
- data/lib/valkyrie/persistence/postgres/orm_converter.rb +52 -52
- data/lib/valkyrie/persistence/postgres/query_service.rb +34 -34
- data/lib/valkyrie/persistence/shared/json_value_mapper.rb +1 -1
- data/lib/valkyrie/persistence/solr/model_converter.rb +337 -337
- data/lib/valkyrie/persistence/solr/orm_converter.rb +3 -3
- data/lib/valkyrie/persistence/solr/queries/find_members_query.rb +1 -1
- data/lib/valkyrie/persistence/solr/query_service.rb +12 -12
- data/lib/valkyrie/specs/shared_specs/persister.rb +2 -2
- data/lib/valkyrie/storage/fedora.rb +16 -16
- data/lib/valkyrie/storage_adapter.rb +11 -11
- data/lib/valkyrie/version.rb +1 -1
- data/tasks/dev.rake +14 -51
- data/valkyrie.gemspec +3 -4
- metadata +22 -33
- data/.docker-stack/valkyrie-development/docker-compose.yml +0 -53
- data/.docker-stack/valkyrie-test/docker-compose.yml +0 -53
- data/tasks/docker.rake +0 -31
@@ -325,21 +325,21 @@ module Valkyrie::Persistence::Fedora
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class MappedFedoraValue < ::Valkyrie::ValueMapper
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private
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# Map a default Ruby data type
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# (This maps the existing Property to a FedoraValue first)
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# @param [Object] converted_value
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# @return [Valkyrie::Persistence::Fedora::Persister::ModelConverter::Property]
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def map_value(converted_value:)
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calling_mapper.for(
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Property.new(
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value.subject,
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value.key,
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converted_value,
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value.adapter,
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value.resource
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)
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).result
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end
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end
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# Class mapping Property objects for Valkyrie IDs using typed RDF literals
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end
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end
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# Class for handling cases where
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class
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# Determines whether or not the value has a blacklisted namespace for the RDF statement object
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# Class for handling cases where deny listed values should not be mapped
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class DenylistedValue < ::Valkyrie::ValueMapper
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# Determines whether or not the value has a denied namespace for the RDF statement object
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# (i. e. avoid attempting to map any RDF statements making assertions about LDP containers or resource internal to Fedora)
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# @param [Property] value
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# @return [Boolean]
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value.statement.object.to_s.start_with?("http://www.w3.org/ns/ldp", "http://fedora.info")
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end
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# Provide the NullApplicator Class for any Property in a
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# Provide the NullApplicator Class for any Property in a deny listed namespace
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def result
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NullApplicator
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end
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end
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# @deprecated
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# Class for handling cases where deny listed values should not be mapped
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# @see DenylistedValue
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class BlacklistedValue < DenylistedValue
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FedoraValue.register(self)
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warn "[DEPRECATION] Samvera is deprecating '#{self}' in 3.0.0. Use #{DenylistedValue} instead."
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end
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# Class for handling cases where the RDF subject of a Property references a separate resource using a hash URI
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class DifferentSubject < ::Valkyrie::ValueMapper
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FedoraValue.register(self)
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# Casts the value of the RDF literal into an Applicator for DateTime values
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# @return [Applicator]
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def result
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value.statement.object = ::DateTime.iso8601(value.statement.object.to_s).
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value.statement.object = ::DateTime.iso8601(value.statement.object.to_s).new_offset(0)
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calling_mapper.for(Property.new(statement: value.statement, scope: value.scope, adapter: value.adapter)).result
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end
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end
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# Casts the value of the RDF literal into an Applicator for DateTime values
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# @return [Applicator]
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def result
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value.statement.object =
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value.statement.object = DateTime.parse(value.statement.object.to_s).new_offset(0)
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calling_mapper.for(Property.new(statement: value.statement, scope: value.scope, adapter: value.adapter)).result
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end
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end
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# @param [Hash] hsh a new or existing Hash of attribute for Valkyrie resource attributes
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# @return [Hash]
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def apply_to(hsh)
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return if
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return if deny?(key)
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hsh[key.to_sym] = if hsh.key?(key.to_sym)
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Array.wrap(hsh[key.to_sym]) + cast_array(values)
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else
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key
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end
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#
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# @deprecated
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# Determines whether or not a key is on the deny list for mapping
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# (For example <http://fedora.info/definitions> assertions are not mapped to Valkyrie attributes)
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# @param [Symbol] key
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# @return [Boolean]
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def blacklist?(key)
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blacklist.
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warn "[DEPRECATION] Samvera is deprecating '#{self.class}#blacklist?' in 3.0.0. Use #{self.class}#deny? instead."
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deny?(key)
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end
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# Determines whether or not a key is on the deny list for mapping
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# (For example <http://fedora.info/definitions> assertions are not mapped to Valkyrie attributes)
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# @param [Symbol] key
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# @return [Boolean]
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def deny?(key)
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denylist.each do |denylist_item|
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return true if key.start_with?(denylist_item)
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end
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false
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end
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# @param [Object] values
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# @return [Array<Object>]
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def cast_array(values)
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[values]
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else
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Array(values)
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end
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Array(values)
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end
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#
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# @deprecated
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# Retrieve a list of denied URIs for predicates
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# @return [Array<String>]
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def blacklist
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warn "[DEPRECATION] Samvera is deprecating '#{self.class}#blacklist' in 3.0.0. Use #{self.class}#denylist instead."
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denylist
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end
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# Retrieve a list of denied URIs for predicates
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# @return [Array<String>]
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def denylist
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[
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"http://fedora.info/definitions",
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"http://www.iana.org/assignments/relation/last"
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def find_many_by_ids(ids:)
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ids = ids.uniq
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ids.map do |id|
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nil
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end
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find_by(id: id)
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rescue ::Valkyrie::Persistence::ObjectNotFoundError
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nil
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end.reject(&:nil?)
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end
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private
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def find_inverse_reference_ids_by_unordered(resource:, property:)
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content = content_with_inbound(id: resource.id)
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property_uri = adapter.schema.predicate_for(property: property, resource: nil)
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content.graph.query([nil, property_uri, adapter.id_to_uri(resource.id)]).map(&:subject).map { |x| x.to_s.gsub(/#.*/, '') }.map { |x| adapter.uri_to_id(x) }
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end
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def find_inverse_references_by_ordered(resource:, property:, ignore_ids: [])
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content = content_with_inbound(id: resource.id)
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ids = content.graph.query([nil, ::RDF::Vocab::ORE.proxyFor, adapter.id_to_uri(resource.id)]).map(&:subject).map { |x| x.to_s.gsub(/#.*/, '') }.map { |x| adapter.uri_to_id(x) }
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ids.uniq!
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ids.delete_if { |id| ignore_ids.include? id }
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ids.lazy.map { |id| find_by(id: id) }.select { |o| o[property].include?(resource.id) }
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end
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# Ensures that an object is (or can be cast into a) Valkyrie::ID
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# @return [Valkyrie::ID]
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# @raise [ArgumentError]
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def validate_id(id)
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id = Valkyrie::ID.new(id.to_s) if id.is_a?(String)
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raise ArgumentError, 'id must be a Valkyrie::ID' unless id.is_a? Valkyrie::ID
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end
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# Resolve a URI for an LDP resource in Fedora and construct a Valkyrie::Resource
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# @param uri [RDF::URI]
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# @return [Valkyrie::Resource]
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# @raise [Valkyrie::Persistence::ObjectNotFoundError]
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def resource_from_uri(uri)
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resource = Ldp::Resource.for(connection, uri, connection.get(uri))
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resource_factory.to_resource(object: resource)
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rescue ::Ldp::Gone, ::Ldp::NotFound
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raise ::Valkyrie::Persistence::ObjectNotFoundError
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end
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# Ensures that a Valkyrie::Resource has been persisted
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# @param resource [Valkyrie::Resource]
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# @raise [ArgumentError]
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def ensure_persisted(resource)
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raise ArgumentError, 'resource is not saved' unless resource.persisted?
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end
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end
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end
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@@ -62,46 +62,46 @@ module Valkyrie::Persistence::Memory
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private
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def generate_id(resource)
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resource.new(id: SecureRandom.uuid)
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end
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# Convert all dates to DateTime in the UTC time zone for consistency.
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def normalize_dates!(resource)
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resource.attributes.each { |k, v| resource.send("#{k}=", normalize_date_values(v)) }
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end
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def normalize_date_values(v)
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return v.map { |val| normalize_date_value(val) } if v.is_a?(Array)
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normalize_date_value(v)
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end
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def normalize_date_value(value)
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return value.new_offset(0) if value.is_a?(DateTime)
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return value.to_datetime.new_offset(0) if value.is_a?(Time)
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value
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end
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# Create a new lock token based on the current timestamp.
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def generate_lock_token(resource)
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return unless resource.optimistic_locking_enabled?
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token = Valkyrie::Persistence::OptimisticLockToken.new(adapter_id: adapter.id, token: Time.now.to_r)
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resource.set_value(Valkyrie::Persistence::Attributes::OPTIMISTIC_LOCK, token)
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end
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# Check whether a resource is current.
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def valid_lock?(resource)
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return true unless resource.optimistic_locking_enabled?
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-
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cached_resource = cache[resource.id]
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return true if cached_resource.blank?
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resource_lock_tokens = resource[Valkyrie::Persistence::Attributes::OPTIMISTIC_LOCK]
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resource_value = resource_lock_tokens.find { |lock_token| lock_token.adapter_id == adapter.id }
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return true if resource_value.blank?
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cached_value = cached_resource[Valkyrie::Persistence::Attributes::OPTIMISTIC_LOCK].first
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cached_value == resource_value
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end
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end
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end
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@@ -51,11 +51,9 @@ module Valkyrie::Persistence::Memory
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def find_many_by_ids(ids:)
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ids = ids.uniq
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ids.map do |id|
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nil
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end
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find_by(id: id)
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rescue ::Valkyrie::Persistence::ObjectNotFoundError
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nil
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end.reject(&:nil?)
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end
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@@ -80,7 +78,7 @@ module Valkyrie::Persistence::Memory
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# @return integer. Count objects in the persistence backend
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# with the given class.
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def count_all_of_model(model:)
|
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-
cache.values.
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+
cache.values.count { |obj| obj.is_a?(model) }
|
84
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end
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# Get all members of a given resource.
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@@ -105,11 +103,9 @@ module Valkyrie::Persistence::Memory
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# `property` property on `resource`. Not necessarily in order.
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def find_references_by(resource:, property:, model: nil)
|
107
105
|
refs = Array.wrap(resource[property]).map do |id|
|
108
|
-
|
109
|
-
|
110
|
-
|
111
|
-
nil
|
112
|
-
end
|
106
|
+
find_by(id: id)
|
107
|
+
rescue ::Valkyrie::Persistence::ObjectNotFoundError
|
108
|
+
nil
|
113
109
|
end.reject(&:nil?)
|
114
110
|
refs.uniq! unless ordered_property?(resource: resource, property: property)
|
115
111
|
return refs unless model
|
@@ -159,27 +155,27 @@ module Valkyrie::Persistence::Memory
|
|
159
155
|
|
160
156
|
private
|
161
157
|
|
162
|
-
|
163
|
-
|
164
|
-
|
165
|
-
|
166
|
-
|
158
|
+
# @return [Array<Valkyrie::ID>] a list of the identifiers of the member objects
|
159
|
+
def member_ids(resource:)
|
160
|
+
return [] unless resource.respond_to? :member_ids
|
161
|
+
resource.member_ids || []
|
162
|
+
end
|
167
163
|
|
168
|
-
|
169
|
-
|
170
|
-
|
171
|
-
|
172
|
-
|
173
|
-
|
164
|
+
# Determine whether or not a value is a Valkyrie ID
|
165
|
+
# @param [Object] id
|
166
|
+
# @return [Boolean]
|
167
|
+
def validate_id(id)
|
168
|
+
raise ArgumentError, 'id must be a Valkyrie::ID' unless id.is_a? Valkyrie::ID
|
169
|
+
end
|
174
170
|
|
175
|
-
|
176
|
-
|
177
|
-
|
178
|
-
|
179
|
-
|
171
|
+
# Ensure that a given Valkyrie Resource has been persisted
|
172
|
+
# @param [Valkyrie::Resource] resource
|
173
|
+
def ensure_persisted(resource)
|
174
|
+
raise ArgumentError, 'resource is not saved' unless resource.persisted?
|
175
|
+
end
|
180
176
|
|
181
|
-
|
182
|
-
|
183
|
-
|
177
|
+
def ordered_property?(resource:, property:)
|
178
|
+
resource.ordered_attribute?(property)
|
179
|
+
end
|
184
180
|
end
|
185
181
|
end
|
@@ -21,65 +21,65 @@ module Valkyrie::Persistence::Postgres
|
|
21
21
|
|
22
22
|
private
|
23
23
|
|
24
|
-
|
25
|
-
|
26
|
-
|
27
|
-
|
28
|
-
|
29
|
-
|
30
|
-
|
31
|
-
)
|
24
|
+
# Construct a new Valkyrie Resource using the attributes retrieved from the database
|
25
|
+
# @return [Valkyrie::Resource]
|
26
|
+
def resource
|
27
|
+
resource_klass.new(
|
28
|
+
attributes.merge(
|
29
|
+
new_record: false,
|
30
|
+
Valkyrie::Persistence::Attributes::OPTIMISTIC_LOCK => lock_token
|
32
31
|
)
|
33
|
-
|
32
|
+
)
|
33
|
+
end
|
34
34
|
|
35
|
-
|
36
|
-
|
37
|
-
|
38
|
-
|
39
|
-
|
40
|
-
|
41
|
-
|
42
|
-
|
43
|
-
|
44
|
-
|
35
|
+
# Construct the optimistic lock token using the adapter and lock version for the Resource
|
36
|
+
# @return [Valkyrie::Persistence::OptimisticLockToken]
|
37
|
+
def lock_token
|
38
|
+
return lock_token_warning unless orm_object.class.column_names.include?("lock_version")
|
39
|
+
@lock_token ||=
|
40
|
+
Valkyrie::Persistence::OptimisticLockToken.new(
|
41
|
+
adapter_id: resource_factory.adapter_id,
|
42
|
+
token: orm_object.lock_version
|
43
|
+
)
|
44
|
+
end
|
45
45
|
|
46
|
-
|
47
|
-
|
48
|
-
|
49
|
-
|
50
|
-
|
51
|
-
|
52
|
-
|
53
|
-
|
54
|
-
|
46
|
+
# Issue a migration warning for previous releases of Valkyrie which did not support optimistic locking
|
47
|
+
def lock_token_warning
|
48
|
+
return nil unless resource_klass.optimistic_locking_enabled?
|
49
|
+
warn "[MIGRATION REQUIRED] You have loaded a resource from the Postgres adapter with " \
|
50
|
+
"optimistic locking enabled, but the necessary migrations have not been run. \n" \
|
51
|
+
"Please run `bin/rails valkyrie_engine:install:migrations && bin/rails db:migrate` " \
|
52
|
+
"to enable this feature for Postgres."
|
53
|
+
nil
|
54
|
+
end
|
55
55
|
|
56
|
-
|
57
|
-
|
58
|
-
|
59
|
-
|
60
|
-
|
56
|
+
# Retrieve the Class used to construct the Valkyrie Resource
|
57
|
+
# @return [Class]
|
58
|
+
def resource_klass
|
59
|
+
Valkyrie.config.resource_class_resolver.call(internal_resource)
|
60
|
+
end
|
61
61
|
|
62
|
-
|
63
|
-
|
64
|
-
|
65
|
-
|
66
|
-
|
62
|
+
# Access the String for the Valkyrie Resource type within the attributes
|
63
|
+
# @return [String]
|
64
|
+
def internal_resource
|
65
|
+
attributes[:internal_resource]
|
66
|
+
end
|
67
67
|
|
68
|
-
|
69
|
-
|
70
|
-
|
71
|
-
|
68
|
+
# @return [Hash] Valkyrie-style hash of attributes.
|
69
|
+
def attributes
|
70
|
+
@attributes ||= orm_object.attributes.merge(rdf_metadata).symbolize_keys
|
71
|
+
end
|
72
72
|
|
73
|
-
|
74
|
-
|
75
|
-
|
76
|
-
|
77
|
-
|
73
|
+
# Generate a Hash derived from Valkyrie Resource metadata encoded in the RDF
|
74
|
+
# @return [Hash]
|
75
|
+
def rdf_metadata
|
76
|
+
@rdf_metadata ||= RDFMetadata.new(orm_object.metadata).result
|
77
|
+
end
|
78
78
|
|
79
|
-
|
80
|
-
|
81
|
-
|
82
|
-
|
83
|
-
|
79
|
+
# Responsible for converting `metadata` JSON-B field in
|
80
|
+
# {Valkyrie::Persistence::Postgres::ORM::Resource} into an acceptable hash
|
81
|
+
# for {Valkyrie::Resource}
|
82
|
+
class RDFMetadata < ::Valkyrie::Persistence::Shared::JSONValueMapper
|
83
|
+
end
|
84
84
|
end
|
85
85
|
end
|