us_quality_core_test_kit 0.1.1 → 0.1.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/NOTICE.md +12 -0
- data/config/presets/{localhost_preset.json → inferno_reference_server_preset.json.erb} +2 -2
- data/lib/us_quality_core_test_kit/client/generator/example_client_generator.rb +0 -1
- data/lib/us_quality_core_test_kit/client/generator/tags_generator.rb +0 -1
- data/lib/us_quality_core_test_kit/client/server_proxy.rb +2 -6
- data/lib/us_quality_core_test_kit/date_search_validation.rb +122 -0
- data/lib/us_quality_core_test_kit/fhir_resource_navigation.rb +9 -0
- data/lib/us_quality_core_test_kit/generated/v0.5.0/devicenotrequested/devicenotrequested_validation_test.rb +3 -0
- data/lib/us_quality_core_test_kit/generated/v0.5.0/devicerequest/devicerequest_validation_test.rb +3 -0
- data/lib/us_quality_core_test_kit/generated/v0.5.0/patient/patient_validation_test.rb +4 -0
- data/lib/us_quality_core_test_kit/generated/v0.5.0/us_quality_core_test_suite.rb +1 -2
- data/lib/us_quality_core_test_kit/generator/group_generator.rb +69 -3
- data/lib/us_quality_core_test_kit/generator/group_metadata.rb +100 -4
- data/lib/us_quality_core_test_kit/generator/group_metadata_extractor.rb +184 -8
- data/lib/us_quality_core_test_kit/generator/ig_loader.rb +47 -3
- data/lib/us_quality_core_test_kit/generator/ig_metadata.rb +51 -2
- data/lib/us_quality_core_test_kit/generator/ig_metadata_extractor.rb +25 -6
- data/lib/us_quality_core_test_kit/generator/ig_resources.rb +27 -3
- data/lib/us_quality_core_test_kit/generator/must_support_metadata_extractor.rb +366 -9
- data/lib/us_quality_core_test_kit/generator/must_support_test_generator.rb +54 -3
- data/lib/us_quality_core_test_kit/generator/provenance_revinclude_search_test_generator.rb +149 -3
- data/lib/us_quality_core_test_kit/generator/read_test_generator.rb +54 -3
- data/lib/us_quality_core_test_kit/generator/reference_resolution_test_generator.rb +57 -3
- data/lib/us_quality_core_test_kit/generator/search_definition_metadata_extractor.rb +181 -5
- data/lib/us_quality_core_test_kit/generator/search_metadata_extractor.rb +61 -3
- data/lib/us_quality_core_test_kit/generator/search_test_generator.rb +186 -3
- data/lib/us_quality_core_test_kit/generator/suite_generator.rb +35 -8
- data/lib/us_quality_core_test_kit/generator/terminology_binding_metadata_extractor.rb +107 -3
- data/lib/us_quality_core_test_kit/generator/validation_test_generator.rb +83 -4
- data/lib/us_quality_core_test_kit/generator/value_extractor.rb +147 -3
- data/lib/us_quality_core_test_kit/must_support_test.rb +15 -3
- data/lib/us_quality_core_test_kit/primitive_type.rb +7 -0
- data/lib/us_quality_core_test_kit/read_test.rb +99 -4
- data/lib/us_quality_core_test_kit/reference_resolution_test.rb +164 -3
- data/lib/us_quality_core_test_kit/resource_search_param_checker.rb +138 -0
- data/lib/us_quality_core_test_kit/search_test.rb +681 -46
- data/lib/us_quality_core_test_kit/search_test_properties.rb +53 -3
- data/lib/us_quality_core_test_kit/validation_test.rb +51 -4
- data/lib/us_quality_core_test_kit/version.rb +2 -2
- data/lib/us_quality_core_test_kit/well_known_code_systems.rb +23 -0
- metadata +8 -23
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# frozen_string_literal: true
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require_relative 'date_search_validation'
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require_relative 'resource_search_param_checker'
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require_relative 'search_test_properties'
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require_relative 'well_known_code_systems'
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require_relative 'fhir_resource_navigation'
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module USQualityCoreTestKit
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module SearchTest
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extend Forwardable
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include DateSearchValidation
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include Inferno::DSL::FHIRResourceNavigation
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include ResourceSearchParamChecker
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include WellKnownCodeSystems
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def_delegators 'self.class', :metadata, :provenance_metadata, :properties
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def_delegators 'properties',
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:resource_type,
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:search_param_names,
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:saves_delayed_references?,
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:first_search?,
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:fixed_value_search?,
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:possible_status_search?,
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:test_medication_inclusion?,
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:test_post_search?,
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:token_search_params,
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:test_reference_variants?,
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:params_with_comparators,
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:multiple_or_search_params
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def all_search_params
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@all_search_params ||=
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patient_id_list.each_with_object({}) do |patient_id, params|
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params[patient_id] ||= []
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new_params =
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if fixed_value_search?
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fixed_value_search_param_values.map { |value| fixed_value_search_params(value, patient_id) }
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else
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[search_params_with_values(search_param_names, patient_id)]
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end
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new_params.reject! do |a_params|
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a_params.any? { |_key, value| value.blank? }
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end
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\.where\(url='(?<url>[^']+)'\)
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\.(?<value_path>value(?:[A-Z]\w*|\[x\])?)
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\z
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/x
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params[patient_id].concat(new_params)
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end
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end
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def
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def all_provenance_revinclude_search_params
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@all_provenance_revinclude_search_params ||=
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all_search_params.transform_values! do |params_list|
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params_list.map { |params| params.merge(_revinclude: 'Provenance:target') }
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end
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end
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def
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def any_valid_search_params?(search_params)
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search_params.any? { |_patient_id, params| params.present? }
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end
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def
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def run_provenance_revinclude_search_test
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# TODO: skip if not supported?
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skip_if !any_valid_search_params?(all_provenance_revinclude_search_params), unable_to_resolve_params_message
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provenance_resources =
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all_provenance_revinclude_search_params.flat_map do |_patient_id, params_list|
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params_list.flat_map do |params|
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fhir_search resource_type, params:, tags: tags(params)
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perform_search_with_status(params, patient_id) if response[:status] == 400 && possible_status_search?
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check_search_response
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# TODO: check that only provenance resources for resources matching
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# granular scopes returned
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fetch_and_assert_all_bundled_resources(additional_resource_types: ['Provenance'], params:)
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.select { |resource| resource.resourceType == 'Provenance' }
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end
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end
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scratch_provenance_resources[:all] ||= []
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scratch_provenance_resources[:all].concat(provenance_resources)
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save_delayed_references(provenance_resources, 'Provenance')
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skip_if provenance_resources.empty?, no_resources_skip_message('Provenance')
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end
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def
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def run_search_test
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# TODO: skip if not supported?
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skip_if !any_valid_search_params?(all_search_params), unable_to_resolve_params_message
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resources_returned =
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all_search_params.flat_map do |patient_id, params_list|
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params_list.flat_map { |params| perform_search(params, patient_id) }
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end
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skip_if resources_returned.empty?, no_resources_skip_message
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perform_multiple_or_search_test if multiple_or_search_params.present?
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end
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def perform_search(params, patient_id)
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fhir_search resource_type, params:, tags: tags(params)
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perform_search_with_status(params, patient_id) if response[:status] == 400 && possible_status_search?
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check_search_response
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resources_returned =
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fetch_and_assert_all_bundled_resources(params:).select { |resource| resource.resourceType == resource_type }
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return [] if resources_returned.blank?
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perform_comparator_searches(params, patient_id) if params_with_comparators.present?
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if first_search?
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all_scratch_resources.concat(resources_returned).uniq!
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scratch_resources_for_patient(patient_id).concat(resources_returned).uniq!
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end
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resources_returned.each do |resource|
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check_resource_against_params(resource, params)
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end
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save_delayed_references(resources_returned) if saves_delayed_references?
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return resources_returned if all_search_variants_tested?
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perform_post_search(resources_returned, params) if test_post_search?
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test_medication_inclusion(resources_returned, params, patient_id) if test_medication_inclusion?
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perform_reference_with_type_search(params, resources_returned.count) if test_reference_variants?
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perform_search_with_system(params, patient_id) if token_search_params.present?
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resources_returned
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end
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def perform_post_search(get_search_resources, params)
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fhir_search resource_type, params:, search_method: :post
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check_search_response
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post_search_resources = fetch_and_assert_all_bundled_resources.select do |resource|
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resource.resourceType == resource_type
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end
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filter_devices(post_search_resources) if resource_type == 'Device'
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get_resource_count = get_search_resources.length
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post_resource_count = post_search_resources.length
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search_variant_test_records[:post_variant] = true
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assert get_resource_count == post_resource_count,
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'Expected search by POST to return the same results as search by GET, ' \
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"but GET search returned #{get_resource_count} resources, and POST search " \
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"returned #{post_resource_count} resources."
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end
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def excluded_code?(coding, codes_to_exclude)
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codes_to_exclude.any? do |exclude_code|
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if exclude_code.include?('|')
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system, code = exclude_code.split('|')
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coding.code == code && coding.system == system
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else
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code = exclude_code
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coding.code == code
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end
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rescue StandardError => e
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Inferno::Application['logger'].error("Unable to resolve reference #{reference}")
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Inferno::Application['logger'].error(e.full_message)
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nil
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end
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end
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def
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def filter_adi_document_reference(resources)
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resources.select! do |resource|
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resource.category.any? do |category|
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category.coding.any? do |coding|
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metadata.search_definitions[:category][:values].include? coding.code
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end
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end
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end
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end
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def
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history_index = parts.index('_history')
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parts = parts.first(history_index) if history_index
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def search_and_check_response(params, resource_type = self.resource_type)
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fhir_search resource_type, params:, tags: tags(params)
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check_search_response
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end
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def
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def check_search_response
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assert_response_status(200)
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assert_resource_type(:bundle)
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# NOTE: how do we want to handle validating Bundles?
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end
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return super unless value.is_a? Hash
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def search_variant_test_records
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@search_variant_test_records ||= initial_search_variant_test_records
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end
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def initial_search_variant_test_records
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{}.tap do |records|
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records[:post_variant] = false if test_post_search?
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records[:medication_inclusion] = false if test_medication_inclusion?
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records[:reference_variants] = false if test_reference_variants?
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records[:token_variants] = false if token_search_params.present?
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records[:comparator_searches] = Set.new if params_with_comparators.present?
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end
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end
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def all_search_variants_tested?
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search_variant_test_records.all? { |_variant, tested| tested.present? } &&
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all_comparator_searches_tested?
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end
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def all_comparator_searches_tested?
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return true if params_with_comparators.blank?
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Set.new(params_with_comparators) == search_variant_test_records[:comparator_searches]
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end
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def date_comparator_value(comparator, date)
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date = date.start || date.end if date.is_a? FHIR::Period
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case comparator
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when 'lt', 'le'
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comparator + (DateTime.xmlschema(date) + 1).xmlschema
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when 'gt', 'ge'
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comparator + (DateTime.xmlschema(date) - 1).xmlschema
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else
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# ''
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raise "Unsupported comparator '#{comparator}'"
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end
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end
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def required_comparators(name)
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metadata
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.search_definitions
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.dig(name.to_sym, :comparators)
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.select { |_comparator, expectation| expectation == 'SHALL' }
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.keys
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.map(&:to_s)
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end
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def perform_comparator_searches(params, patient_id)
|
|
242
|
+
params_with_comparators.each do |name|
|
|
243
|
+
next if search_variant_test_records[:comparator_searches].include? name
|
|
244
|
+
|
|
245
|
+
required_comparators(name).each do |comparator|
|
|
246
|
+
paths = search_param_paths(name).first
|
|
247
|
+
date_element = find_a_value_at(scratch_resources_for_patient(patient_id), paths)
|
|
248
|
+
params_with_comparator = params.merge(name => date_comparator_value(comparator, date_element))
|
|
249
|
+
|
|
250
|
+
search_and_check_response(params_with_comparator)
|
|
251
|
+
|
|
252
|
+
fetch_and_assert_all_bundled_resources(params: params_with_comparator).each do |resource|
|
|
253
|
+
check_resource_against_params(resource, params_with_comparator) if resource.resourceType == resource_type
|
|
254
|
+
end
|
|
255
|
+
end
|
|
256
|
+
|
|
257
|
+
search_variant_test_records[:comparator_searches] << name
|
|
258
|
+
end
|
|
259
|
+
end
|
|
260
|
+
|
|
261
|
+
def perform_reference_with_type_search(params, resource_count)
|
|
262
|
+
return if resource_count.zero?
|
|
263
|
+
return if search_variant_test_records[:reference_variants]
|
|
264
|
+
|
|
265
|
+
new_search_params = params.merge('patient' => "Patient/#{params['patient']}")
|
|
266
|
+
search_and_check_response(new_search_params)
|
|
267
|
+
|
|
268
|
+
reference_with_type_resources =
|
|
269
|
+
fetch_and_assert_all_bundled_resources(params: new_search_params)
|
|
270
|
+
.select { |resource| resource.resourceType == resource_type }
|
|
271
|
+
|
|
272
|
+
new_resource_count = reference_with_type_resources.count
|
|
273
|
+
|
|
274
|
+
assert new_resource_count == resource_count,
|
|
275
|
+
"Expected search by `#{params['patient']}` to to return the same results as searching " \
|
|
276
|
+
"by `#{new_search_params['patient']}`, but found #{resource_count} resources with " \
|
|
277
|
+
"`#{params['patient']}` and #{new_resource_count} with `#{new_search_params['patient']}`"
|
|
278
|
+
|
|
279
|
+
search_variant_test_records[:reference_variants] = true
|
|
280
|
+
end
|
|
281
|
+
|
|
282
|
+
def perform_search_with_system(params, patient_id)
|
|
283
|
+
return if search_variant_test_records[:token_variants]
|
|
284
|
+
|
|
285
|
+
new_search_params = search_params_with_values(token_search_params, patient_id, include_system: true)
|
|
286
|
+
return if new_search_params.any? { |_name, value| value.blank? }
|
|
287
|
+
|
|
288
|
+
search_params = params.merge(new_search_params)
|
|
289
|
+
search_and_check_response(search_params)
|
|
290
|
+
|
|
291
|
+
resources_returned =
|
|
292
|
+
fetch_and_assert_all_bundled_resources(params: search_params)
|
|
293
|
+
.select { |resource| resource.resourceType == resource_type }
|
|
294
|
+
|
|
295
|
+
assert resources_returned.present?, 'No resources were returned when searching by `system|code`'
|
|
296
|
+
|
|
297
|
+
search_variant_test_records[:token_variants] = true
|
|
298
|
+
end
|
|
299
|
+
|
|
300
|
+
def perform_search_with_status(
|
|
301
|
+
original_params,
|
|
302
|
+
_patient_id,
|
|
303
|
+
status_search_values: self.status_search_values,
|
|
304
|
+
resource_type: self.resource_type
|
|
305
|
+
)
|
|
306
|
+
assert resource.is_a?(FHIR::OperationOutcome), 'Server returned a status of 400 without an OperationOutcome'
|
|
307
|
+
# TODO: warn about documenting status requirements
|
|
308
|
+
status_search_values.flat_map do |status_value|
|
|
309
|
+
search_params = original_params.merge("#{status_search_param_name}": status_value)
|
|
310
|
+
|
|
311
|
+
search_and_check_response(search_params)
|
|
312
|
+
|
|
313
|
+
entries = resource.entry.select { |entry| entry.resource.resourceType == resource_type }
|
|
314
|
+
|
|
315
|
+
if entries.present?
|
|
316
|
+
original_params.merge!("#{status_search_param_name}": status_value)
|
|
317
|
+
break
|
|
318
|
+
end
|
|
319
|
+
end
|
|
320
|
+
end
|
|
321
|
+
|
|
322
|
+
def status_search_param_name
|
|
323
|
+
@status_search_param_name ||=
|
|
324
|
+
metadata.search_definitions.keys.find { |key| key.to_s.include? 'status' }
|
|
325
|
+
end
|
|
326
|
+
|
|
327
|
+
def status_search_values
|
|
328
|
+
default_search_values(status_search_param_name)
|
|
329
|
+
end
|
|
330
|
+
|
|
331
|
+
def default_search_values(param_name)
|
|
332
|
+
definition = metadata.search_definitions[param_name]
|
|
333
|
+
return [] if definition.blank?
|
|
334
|
+
|
|
335
|
+
definition[:multiple_or] == 'SHALL' ? [definition[:values].join(',')] : Array.wrap(definition[:values])
|
|
336
|
+
end
|
|
337
|
+
|
|
338
|
+
def perform_multiple_or_search_test
|
|
339
|
+
resolved_one = false
|
|
340
|
+
|
|
341
|
+
all_search_params.each do |patient_id, params_list|
|
|
342
|
+
next unless params_list.present?
|
|
343
|
+
|
|
344
|
+
search_params = params_list.first
|
|
345
|
+
existing_values = {}
|
|
346
|
+
missing_values = {}
|
|
347
|
+
|
|
348
|
+
multiple_or_search_params.each do |param_name|
|
|
349
|
+
search_value = default_search_values(param_name.to_sym)
|
|
350
|
+
search_params = search_params.merge(param_name.to_s => search_value)
|
|
351
|
+
existing_values[param_name.to_sym] =
|
|
352
|
+
scratch_resources_for_patient(patient_id).map(¶m_name.to_sym).compact.uniq
|
|
353
|
+
end
|
|
354
|
+
|
|
355
|
+
# skip patient without multiple-or values
|
|
356
|
+
next if existing_values.values.any?(&:empty?)
|
|
357
|
+
|
|
358
|
+
resolved_one = true
|
|
359
|
+
|
|
360
|
+
search_and_check_response(search_params)
|
|
361
|
+
|
|
362
|
+
resources_returned =
|
|
363
|
+
fetch_and_assert_all_bundled_resources(params: search_params)
|
|
364
|
+
.select { |resource| resource.resourceType == resource_type }
|
|
365
|
+
|
|
366
|
+
multiple_or_search_params.each do |param_name|
|
|
367
|
+
missing_values[param_name.to_sym] =
|
|
368
|
+
existing_values[param_name.to_sym] - resources_returned.map(¶m_name.to_sym)
|
|
369
|
+
end
|
|
370
|
+
|
|
371
|
+
missing_value_message = missing_values
|
|
372
|
+
.reject { |_param_name, missing_value| missing_value.empty? }
|
|
373
|
+
.map { |param_name, missing_value| "#{missing_value.join(',')} values from #{param_name}" }
|
|
374
|
+
.join(' and ')
|
|
375
|
+
|
|
376
|
+
assert missing_value_message.blank?,
|
|
377
|
+
"Could not find #{missing_value_message} in any of the resources returned for Patient/#{patient_id}"
|
|
378
|
+
|
|
379
|
+
break if resolved_one
|
|
380
|
+
end
|
|
381
|
+
end
|
|
382
|
+
|
|
383
|
+
def test_medication_inclusion(base_resources, params, patient_id)
|
|
384
|
+
return if search_variant_test_records[:medication_inclusion]
|
|
385
|
+
|
|
386
|
+
scratch[:medication_resources] ||= {}
|
|
387
|
+
scratch[:medication_resources][:all] ||= []
|
|
388
|
+
scratch[:medication_resources][patient_id] ||= []
|
|
389
|
+
scratch[:medication_resources][:contained] ||= []
|
|
390
|
+
|
|
391
|
+
base_resources_with_external_reference =
|
|
392
|
+
base_resources
|
|
393
|
+
.select { |request| request&.medicationReference&.present? }
|
|
394
|
+
.reject { |request| request&.medicationReference&.reference&.start_with? '#' }
|
|
395
|
+
|
|
396
|
+
contained_medications =
|
|
397
|
+
base_resources
|
|
398
|
+
.select { |request| request&.medicationReference&.reference&.start_with? '#' }
|
|
399
|
+
.flat_map(&:contained)
|
|
400
|
+
.select { |resource| resource.resourceType == 'Medication' }
|
|
401
|
+
|
|
402
|
+
scratch[:medication_resources][:all] += contained_medications
|
|
403
|
+
scratch[:medication_resources][patient_id] += contained_medications
|
|
404
|
+
scratch[:medication_resources][:contained] += contained_medications
|
|
405
|
+
|
|
406
|
+
return if base_resources_with_external_reference.blank?
|
|
407
|
+
|
|
408
|
+
search_params = params.merge(_include: "#{resource_type}:medication")
|
|
409
|
+
|
|
410
|
+
search_and_check_response(search_params)
|
|
411
|
+
|
|
412
|
+
medications =
|
|
413
|
+
fetch_and_assert_all_bundled_resources(params: search_params)
|
|
414
|
+
.select { |resource| resource.resourceType == 'Medication' }
|
|
415
|
+
assert medications.present?, 'No Medications were included in the search results'
|
|
416
|
+
|
|
417
|
+
included_medications = medications.map { |medication| "#{medication.resourceType}/#{medication.id}" }
|
|
418
|
+
|
|
419
|
+
matched_base_resources = base_resources_with_external_reference.select do |base_resource|
|
|
420
|
+
included_medications.any? do |medication_reference|
|
|
421
|
+
reference_match?(base_resource.medicationReference.reference, medication_reference)
|
|
422
|
+
end
|
|
423
|
+
end
|
|
424
|
+
|
|
425
|
+
not_matched_included_medications = included_medications.select do |medication_reference|
|
|
426
|
+
matched_base_resources.none? do |base_resource|
|
|
427
|
+
reference_match?(base_resource.medicationReference.reference, medication_reference)
|
|
428
|
+
end
|
|
429
|
+
end
|
|
430
|
+
|
|
431
|
+
not_matched_included_medications_string = not_matched_included_medications.join(',')
|
|
432
|
+
assert not_matched_included_medications.empty?,
|
|
433
|
+
"No #{resource_type} references #{not_matched_included_medications_string} in the search result."
|
|
434
|
+
|
|
435
|
+
medications.uniq!(&:id)
|
|
436
|
+
|
|
437
|
+
scratch[:medication_resources][:all] += medications
|
|
438
|
+
scratch[:medication_resources][patient_id] += medications
|
|
439
|
+
|
|
440
|
+
search_variant_test_records[:medication_inclusion] = true
|
|
441
|
+
end
|
|
442
|
+
|
|
443
|
+
def reference_match?(reference, local_reference)
|
|
444
|
+
regex_pattern = %r{^(#{Regexp.escape(local_reference)}|\S+/#{Regexp.escape(local_reference)}(?:[/|]\S+)*)$}
|
|
445
|
+
reference.match?(regex_pattern)
|
|
446
|
+
end
|
|
447
|
+
|
|
448
|
+
def all_scratch_resources
|
|
449
|
+
scratch_resources[:all] ||= []
|
|
450
|
+
end
|
|
451
|
+
|
|
452
|
+
def scratch_resources_for_patient(patient_id)
|
|
453
|
+
return all_scratch_resources if patient_id.nil?
|
|
454
|
+
|
|
455
|
+
scratch_resources[patient_id] ||= []
|
|
456
|
+
end
|
|
457
|
+
|
|
458
|
+
def references_to_save(resource_type = nil)
|
|
459
|
+
reference_metadata = resource_type == 'Provenance' ? provenance_metadata : metadata
|
|
460
|
+
reference_metadata.delayed_references
|
|
461
|
+
end
|
|
462
|
+
|
|
463
|
+
def fixed_value_search_param_name
|
|
464
|
+
(search_param_names - ['patient']).first
|
|
465
|
+
end
|
|
466
|
+
|
|
77
467
|
def fixed_value_search_param_values
|
|
78
468
|
names = fixed_value_search_param_names
|
|
79
469
|
values = names.map { |name| Array(metadata.search_definitions.dig(name.to_sym, :values)) }
|
|
@@ -84,8 +474,118 @@ module USQualityCoreTestKit
|
|
|
84
474
|
values.first.product(*values.drop(1)).map { |combination| names.zip(combination).to_h }
|
|
85
475
|
end
|
|
86
476
|
|
|
87
|
-
def
|
|
88
|
-
search_param_names.
|
|
477
|
+
def fixed_value_search_params(value, patient_id)
|
|
478
|
+
search_param_names.each_with_object({}) do |name, params|
|
|
479
|
+
param_value = value.is_a?(Hash) ? value[name] : value
|
|
480
|
+
params[name] = patient_id_param?(name) ? patient_id : param_value
|
|
481
|
+
end
|
|
482
|
+
end
|
|
483
|
+
|
|
484
|
+
def search_params_with_values(search_param_names, patient_id, include_system: false)
|
|
485
|
+
resources = scratch_resources_for_patient(patient_id)
|
|
486
|
+
|
|
487
|
+
if resources.empty?
|
|
488
|
+
return search_param_names.each_with_object({}) do |name, params|
|
|
489
|
+
value = patient_id_param?(name) ? patient_id : nil
|
|
490
|
+
params[name] = value
|
|
491
|
+
end
|
|
492
|
+
end
|
|
493
|
+
|
|
494
|
+
resources.each_with_object({}) do |resource, outer_params|
|
|
495
|
+
results_from_one_resource = search_param_names.each_with_object({}) do |name, params|
|
|
496
|
+
value = if patient_id_param?(name)
|
|
497
|
+
patient_id
|
|
498
|
+
else
|
|
499
|
+
search_param_value(name, resource,
|
|
500
|
+
include_system: include_system)
|
|
501
|
+
end
|
|
502
|
+
params[name] = value
|
|
503
|
+
end
|
|
504
|
+
|
|
505
|
+
outer_params.merge!(results_from_one_resource)
|
|
506
|
+
|
|
507
|
+
# stop if all parameter values are found
|
|
508
|
+
return outer_params if outer_params.all? { |_key, value| value.present? }
|
|
509
|
+
end
|
|
510
|
+
end
|
|
511
|
+
|
|
512
|
+
def patient_id_list
|
|
513
|
+
return [nil] unless respond_to? :patient_ids
|
|
514
|
+
|
|
515
|
+
patient_ids.split(',').map(&:strip)
|
|
516
|
+
end
|
|
517
|
+
|
|
518
|
+
def patient_search?
|
|
519
|
+
search_param_names.any? { |name| patient_id_param? name }
|
|
520
|
+
end
|
|
521
|
+
|
|
522
|
+
def patient_id_param?(name)
|
|
523
|
+
name == 'patient' || name == 'subject' || (name == '_id' && resource_type == 'Patient')
|
|
524
|
+
end
|
|
525
|
+
|
|
526
|
+
def search_param_paths(name)
|
|
527
|
+
paths = metadata.search_definitions[name.to_sym][:paths]
|
|
528
|
+
paths[0] = 'local_class' if paths.first == 'class'
|
|
529
|
+
|
|
530
|
+
paths
|
|
531
|
+
end
|
|
532
|
+
|
|
533
|
+
def all_search_params_present?(params)
|
|
534
|
+
params.all? { |_name, value| value.present? }
|
|
535
|
+
end
|
|
536
|
+
|
|
537
|
+
def array_of_codes(array)
|
|
538
|
+
array.map { |name| "`#{name}`" }.join(', ')
|
|
539
|
+
end
|
|
540
|
+
|
|
541
|
+
def unable_to_resolve_params_message
|
|
542
|
+
"Could not find values for all search params #{array_of_codes(search_param_names)}"
|
|
543
|
+
end
|
|
544
|
+
|
|
545
|
+
def empty_search_params_message(empty_search_params)
|
|
546
|
+
"Could not find values for the search parameters #{array_of_codes(empty_search_params.keys)}"
|
|
547
|
+
end
|
|
548
|
+
|
|
549
|
+
def no_resources_skip_message(resource_type = self.resource_type)
|
|
550
|
+
"No #{resource_type} resources appear to be available. Please use patients with more information"
|
|
551
|
+
end
|
|
552
|
+
|
|
553
|
+
def fetch_and_assert_all_bundled_resources(
|
|
554
|
+
resource_type: self.resource_type,
|
|
555
|
+
reply_handler: nil,
|
|
556
|
+
max_pages: 20,
|
|
557
|
+
additional_resource_types: [],
|
|
558
|
+
params: nil
|
|
559
|
+
)
|
|
560
|
+
tags = tags(params)
|
|
561
|
+
bundle = resource
|
|
562
|
+
additional_resource_types << 'Medication' if %w[MedicationRequest MedicationDispense].include?(resource_type)
|
|
563
|
+
|
|
564
|
+
assert_handler = proc do |response|
|
|
565
|
+
assert_response_status(200, response: response)
|
|
566
|
+
assert_valid_json(response[:body], "Could not resolve bundle as JSON: #{response[:body]}")
|
|
567
|
+
end
|
|
568
|
+
|
|
569
|
+
reply_and_assert_handler = if reply_handler
|
|
570
|
+
proc do |response|
|
|
571
|
+
assert_handler.call(response)
|
|
572
|
+
reply_handler.call(response)
|
|
573
|
+
end
|
|
574
|
+
else
|
|
575
|
+
assert_handler
|
|
576
|
+
end
|
|
577
|
+
|
|
578
|
+
fetch_all_bundled_resources(resource_type:, bundle:, reply_handler: reply_and_assert_handler, max_pages:,
|
|
579
|
+
additional_resource_types:, tags:)
|
|
580
|
+
end
|
|
581
|
+
|
|
582
|
+
def prefer_well_known_code_system(element, include_system)
|
|
583
|
+
coding =
|
|
584
|
+
find_a_value_at(element, 'coding') { |c| c.code.present? && WellKnownCodeSystems.include?(c.system) }
|
|
585
|
+
|
|
586
|
+
return coding if coding.present?
|
|
587
|
+
|
|
588
|
+
find_a_value_at(element, 'coding') { |c| c.code.present? && (!include_system || c.system.present?) }
|
|
89
589
|
end
|
|
90
590
|
|
|
91
591
|
def search_param_value(name, resource, include_system: false)
|
|
@@ -143,6 +643,78 @@ module USQualityCoreTestKit
|
|
|
143
643
|
search_value.to_s.gsub(',', '\\,')
|
|
144
644
|
end
|
|
145
645
|
|
|
646
|
+
def element_has_valid_value?(element, include_system)
|
|
647
|
+
case element
|
|
648
|
+
when FHIR::Reference
|
|
649
|
+
element.reference.present?
|
|
650
|
+
when FHIR::CodeableConcept
|
|
651
|
+
coding = prefer_well_known_code_system(element, include_system)
|
|
652
|
+
coding.present?
|
|
653
|
+
when FHIR::Identifier
|
|
654
|
+
include_system ? element.value.present? && element.system.present? : element.value.present?
|
|
655
|
+
when FHIR::Coding
|
|
656
|
+
include_system ? element.code.present? && element.system.present? : element.code.present?
|
|
657
|
+
when FHIR::HumanName
|
|
658
|
+
(element.family || element.given&.first || element.text).present?
|
|
659
|
+
when FHIR::Address
|
|
660
|
+
(element.text || element.city || element.state || element.postalCode || element.country).present?
|
|
661
|
+
when Inferno::DSL::PrimitiveType
|
|
662
|
+
element.value.present?
|
|
663
|
+
else
|
|
664
|
+
true
|
|
665
|
+
end
|
|
666
|
+
end
|
|
667
|
+
|
|
668
|
+
def save_resource_reference(resource_type, reference, referencing_resource)
|
|
669
|
+
scratch[:references] ||= {}
|
|
670
|
+
scratch[:references][resource_type] ||= Set.new
|
|
671
|
+
scratch[:references][resource_type] << { reference: reference, referencing_resource: referencing_resource }
|
|
672
|
+
end
|
|
673
|
+
|
|
674
|
+
def save_delayed_references(resources, containing_resource_type = resource_type)
|
|
675
|
+
resources.each do |resource|
|
|
676
|
+
references_to_save(containing_resource_type).each do |reference_to_save|
|
|
677
|
+
references = resolve_path(resource, reference_to_save[:path]).select do |reference|
|
|
678
|
+
reference.is_a?(FHIR::Reference) &&
|
|
679
|
+
!reference.contained? && reference.reference.present?
|
|
680
|
+
end
|
|
681
|
+
|
|
682
|
+
references.each do |reference|
|
|
683
|
+
resource_type = reference.resource_class.name.demodulize
|
|
684
|
+
need_to_save = reference_to_save[:resources].include?(resource_type)
|
|
685
|
+
next unless need_to_save
|
|
686
|
+
|
|
687
|
+
reference_resource_type = resource.resourceType
|
|
688
|
+
reference_resource_id = resource.id
|
|
689
|
+
|
|
690
|
+
referencing_resource = "#{reference_resource_type}/#{reference_resource_id}"
|
|
691
|
+
|
|
692
|
+
save_resource_reference(resource_type, reference, referencing_resource)
|
|
693
|
+
end
|
|
694
|
+
end
|
|
695
|
+
end
|
|
696
|
+
end
|
|
697
|
+
|
|
698
|
+
#### RESULT CHECKING ####
|
|
699
|
+
|
|
700
|
+
def check_resource_against_params(resource, params)
|
|
701
|
+
params.each do |name, escaped_search_value|
|
|
702
|
+
values_found = []
|
|
703
|
+
search_value = unescape_search_value(escaped_search_value)
|
|
704
|
+
|
|
705
|
+
match_found = resource_matches_param?(resource, name, escaped_search_value, values_found)
|
|
706
|
+
|
|
707
|
+
assert match_found,
|
|
708
|
+
"#{resource_type}/#{resource.id} did not match the search parameters:\n" \
|
|
709
|
+
"* Expected: #{unescape_search_value(search_value)}\n" \
|
|
710
|
+
"* Found: #{values_found.map(&:inspect).join(', ')}"
|
|
711
|
+
end
|
|
712
|
+
end
|
|
713
|
+
|
|
714
|
+
def unescape_search_value(value)
|
|
715
|
+
value&.gsub('\\,', ',')
|
|
716
|
+
end
|
|
717
|
+
|
|
146
718
|
def resource_matches_param?(resource, search_param_name, escaped_search_value, values_found = [])
|
|
147
719
|
search_value = unescape_search_value(escaped_search_value)
|
|
148
720
|
paths = search_param_paths(search_param_name)
|
|
@@ -220,6 +792,69 @@ module USQualityCoreTestKit
|
|
|
220
792
|
match_found
|
|
221
793
|
end
|
|
222
794
|
|
|
795
|
+
def tags(params)
|
|
796
|
+
return nil unless config.options[:tag_requests]
|
|
797
|
+
|
|
798
|
+
return nil if params.blank?
|
|
799
|
+
|
|
800
|
+
return [search_params_tag(params)] if %w[Condition DiagnosticReport DocumentReference Observation ServiceRequest].include? resource_type
|
|
801
|
+
|
|
802
|
+
nil
|
|
803
|
+
end
|
|
804
|
+
|
|
805
|
+
def search_params_tag(params)
|
|
806
|
+
"#{resource_type}?#{params.keys.join('&')}"
|
|
807
|
+
end
|
|
808
|
+
|
|
809
|
+
EXTENSION_VALUE_PATH_REGEX = /
|
|
810
|
+
\A
|
|
811
|
+
(?<extension_type>modifierExtension|extension)
|
|
812
|
+
\.where\(url='(?<url>[^']+)'\)
|
|
813
|
+
\.(?<value_path>value(?:[A-Z]\w*|\[x\])?)
|
|
814
|
+
\z
|
|
815
|
+
/x
|
|
816
|
+
|
|
817
|
+
def get_next_value(element, property)
|
|
818
|
+
return resolve_reference_value(element) if property.to_s == 'resolve()'
|
|
819
|
+
|
|
820
|
+
super
|
|
821
|
+
end
|
|
822
|
+
|
|
823
|
+
def resolve_reference_value(element)
|
|
824
|
+
reference = element&.reference
|
|
825
|
+
return if reference.blank? || reference.start_with?('#')
|
|
826
|
+
|
|
827
|
+
resolved_reference_cache[reference] ||= begin
|
|
828
|
+
resource_type, resource_id = resource_type_and_id_from_reference(reference)
|
|
829
|
+
|
|
830
|
+
if resource_type.blank? || resource_id.blank?
|
|
831
|
+
nil
|
|
832
|
+
else
|
|
833
|
+
fhir_read(resource_type, resource_id)&.resource
|
|
834
|
+
end
|
|
835
|
+
rescue StandardError => e
|
|
836
|
+
Inferno::Application['logger'].error("Unable to resolve reference #{reference}")
|
|
837
|
+
Inferno::Application['logger'].error(e.full_message)
|
|
838
|
+
nil
|
|
839
|
+
end
|
|
840
|
+
end
|
|
841
|
+
|
|
842
|
+
def resolved_reference_cache
|
|
843
|
+
@resolved_reference_cache ||= {}
|
|
844
|
+
end
|
|
845
|
+
|
|
846
|
+
def resource_type_and_id_from_reference(reference)
|
|
847
|
+
parts = reference.split('/')
|
|
848
|
+
history_index = parts.index('_history')
|
|
849
|
+
parts = parts.first(history_index) if history_index
|
|
850
|
+
|
|
851
|
+
parts.last(2)
|
|
852
|
+
end
|
|
853
|
+
|
|
854
|
+
def fixed_value_search_param_names
|
|
855
|
+
search_param_names.reject { |name| patient_id_param?(name) }
|
|
856
|
+
end
|
|
857
|
+
|
|
223
858
|
def token_value_matches?(values_found, search_value)
|
|
224
859
|
token_values = values_found.flat_map { |value| token_values_from_element(value) }
|
|
225
860
|
search_tokens = split_escaped_search_values(search_value)
|