us_core_test_kit 0.5.0 → 0.6.1

data/lib/us_core_test_kit/generated/v6.0.0/us_core_test_suite.rb

@@ -1,168 +0,0 @@
-require 'inferno/dsl/oauth_credentials'
-require_relative '../../version'
-require_relative '../../custom_groups/v6.0.0/capability_statement_group'
-require_relative '../../custom_groups/v4.0.0/clinical_notes_guidance_group'
-require_relative '../../custom_groups/data_absent_reason_group'
-require_relative '../../provenance_validator'
-require_relative 'patient_group'
-require_relative 'allergy_intolerance_group'
-require_relative 'care_plan_group'
-require_relative 'care_team_group'
-require_relative 'condition_encounter_diagnosis_group'
-require_relative 'condition_problems_health_concerns_group'
-require_relative 'coverage_group'
-require_relative 'device_group'
-require_relative 'diagnostic_report_note_group'
-require_relative 'diagnostic_report_lab_group'
-require_relative 'document_reference_group'
-require_relative 'encounter_group'
-require_relative 'goal_group'
-require_relative 'immunization_group'
-require_relative 'medication_dispense_group'
-require_relative 'medication_request_group'
-require_relative 'observation_lab_group'
-require_relative 'observation_pregnancystatus_group'
-require_relative 'observation_pregnancyintent_group'
-require_relative 'observation_occupation_group'
-require_relative 'respiratory_rate_group'
-require_relative 'simple_observation_group'
-require_relative 'heart_rate_group'
-require_relative 'body_temperature_group'
-require_relative 'pediatric_weight_for_height_group'
-require_relative 'pulse_oximetry_group'
-require_relative 'smokingstatus_group'
-require_relative 'observation_sexual_orientation_group'
-require_relative 'head_circumference_group'
-require_relative 'body_height_group'
-require_relative 'bmi_group'
-require_relative 'observation_screening_assessment_group'
-require_relative 'blood_pressure_group'
-require_relative 'observation_clinical_result_group'
-require_relative 'pediatric_bmi_for_age_group'
-require_relative 'head_circumference_percentile_group'
-require_relative 'body_weight_group'
-require_relative 'procedure_group'
-require_relative 'questionnaire_response_group'
-require_relative 'service_request_group'
-require_relative 'organization_group'
-require_relative 'practitioner_group'
-require_relative 'provenance_group'
-require_relative 'related_person_group'
-require_relative 'specimen_group'
-
-module USCoreTestKit
-  module USCoreV600
-    class USCoreTestSuite < Inferno::TestSuite
-      title 'US Core v6.0.0'
-      description %(
-        The US Core Test Kit tests systems for their conformance to the [US Core
-        Implementation Guide]().
-
-        Resources are validated with the FHIR Java validator using `tx.fhir.org`
-        as the terminology server. Users should note that the although the ONC
-        Certification (g)(10) Standardized API Test Suite includes tests from
-        this suite, [it uses a different method to perform terminology
-        validation](https://github.com/onc-healthit/onc-certification-g10-test-kit/wiki/FAQ#q-why-do-some-resources-fail-in-us-core-test-kit-with-terminology-validation-errors).
-        As a result, resource validation results may not be consistent between
-        the US Core Test Suite and the ONC Certification (g)(10) Standardized
-        API Test Suite.
-      )
-      version VERSION
-
-      VALIDATION_MESSAGE_FILTERS = [
-        %r{Sub-extension url 'introspect' is not defined by the Extension http://fhir-registry\.smarthealthit\.org/StructureDefinition/oauth-uris},
-        %r{Sub-extension url 'revoke' is not defined by the Extension http://fhir-registry\.smarthealthit\.org/StructureDefinition/oauth-uris},
-        /Observation\.effective\.ofType\(Period\): .*vs-1:/, # Invalid invariant in FHIR v4.0.1
-        /Observation\.effective\.ofType\(Period\): .*us-core-1:/, # Invalid invariant in US Core v3.1.1
-        /Provenance.agent\[\d*\]: Rule provenance-1/ #Invalid invariant in US Core v5.0.1
-      ].freeze
-
-      VERSION_SPECIFIC_MESSAGE_FILTERS = [].freeze
-
-      def self.metadata
-        @metadata ||= YAML.load_file(File.join(__dir__, 'metadata.yml'), aliases: true)[:groups].map do |raw_metadata|
-            Generator::GroupMetadata.new(raw_metadata)
-          end
-      end
-
-      validator do
-        url ENV.fetch('V600_VALIDATOR_URL', 'http://validator_service:4567')
-        message_filters = VALIDATION_MESSAGE_FILTERS + VERSION_SPECIFIC_MESSAGE_FILTERS
-
-        exclude_message do |message|
-
-          message_filters.any? { |filter| filter.match? message.message }
-        end
-
-        perform_additional_validation do |resource, profile_url|
-          ProvenanceValidator.validate(resource) if resource.instance_of?(FHIR::Provenance)
-        end
-      end
-
-      id :us_core_v600
-
-      input :url,
-        title: 'FHIR Endpoint',
-        description: 'URL of the FHIR endpoint'
-      input :smart_credentials,
-        title: 'OAuth Credentials',
-        type: :oauth_credentials,
-        optional: true
-
-      fhir_client do
-        url :url
-        oauth_credentials :smart_credentials
-      end
-
-      group from: :us_core_v600_capability_statement
-  
-      group from: :us_core_v600_patient
-      group from: :us_core_v600_allergy_intolerance
-      group from: :us_core_v600_care_plan
-      group from: :us_core_v600_care_team
-      group from: :us_core_v600_condition_encounter_diagnosis
-      group from: :us_core_v600_condition_problems_health_concerns
-      group from: :us_core_v600_coverage
-      group from: :us_core_v600_device
-      group from: :us_core_v600_diagnostic_report_note
-      group from: :us_core_v600_diagnostic_report_lab
-      group from: :us_core_v600_document_reference
-      group from: :us_core_v600_encounter
-      group from: :us_core_v600_goal
-      group from: :us_core_v600_immunization
-      group from: :us_core_v600_medication_dispense
-      group from: :us_core_v600_medication_request
-      group from: :us_core_v600_observation_lab
-      group from: :us_core_v600_observation_pregnancystatus
-      group from: :us_core_v600_observation_pregnancyintent
-      group from: :us_core_v600_observation_occupation
-      group from: :us_core_v600_respiratory_rate
-      group from: :us_core_v600_simple_observation
-      group from: :us_core_v600_heart_rate
-      group from: :us_core_v600_body_temperature
-      group from: :us_core_v600_pediatric_weight_for_height
-      group from: :us_core_v600_pulse_oximetry
-      group from: :us_core_v600_smokingstatus
-      group from: :us_core_v600_observation_sexual_orientation
-      group from: :us_core_v600_head_circumference
-      group from: :us_core_v600_body_height
-      group from: :us_core_v600_bmi
-      group from: :us_core_v600_observation_screening_assessment
-      group from: :us_core_v600_blood_pressure
-      group from: :us_core_v600_observation_clinical_result
-      group from: :us_core_v600_pediatric_bmi_for_age
-      group from: :us_core_v600_head_circumference_percentile
-      group from: :us_core_v600_body_weight
-      group from: :us_core_v600_procedure
-      group from: :us_core_v600_questionnaire_response
-      group from: :us_core_v600_service_request
-      group from: :us_core_v600_organization
-      group from: :us_core_v600_practitioner
-      group from: :us_core_v600_provenance
-      group from: :us_core_v600_related_person
-      group from: :us_core_v600_specimen
-      group from: :us_core_v400_clinical_notes_guidance
-      group from: :us_core_311_data_absent_reason
-    end
-  end
-end

data/lib/us_core_test_kit/generator/resource_list_generator.rb

@@ -1,42 +0,0 @@
-module USCoreTestKit
-  class Generator
-    class ResourceListGenerator
-      class << self
-        def generate(ig_metadata, base_output_dir)
-          @ig_metadata = ig_metadata
-
-          FileUtils.mkdir_p(base_output_dir)
-          File.open(File.join(base_output_dir, base_output_file_name), 'w') { |f| f.write(output) }
-        end
-
-        def resource_list          
-          @ig_metadata.groups.map(&:resource).uniq
-        end
-
-        def resource_list_string
-          resource_list.map { |resource| "      '#{resource}'" }.join(",\n")
-        end
-
-        def module_name
-          "USCore#{@ig_metadata.reformatted_version.upcase}"
-        end
-
-        def read_interaction(group_metadata)
-          group_metadata.interactions.find { |interaction| interaction[:code] == 'read' }
-        end
-
-        def template
-          @template ||= File.read(File.join(__dir__, 'templates', 'resource_list.rb.erb'))
-        end
-
-        def output
-          ERB.new(template).result(binding)
-        end
-
-        def base_output_file_name
-          "resource_list.rb"
-        end
-      end
-    end
-  end
-end