us_core_test_kit 0.4.7 → 0.5.0

data/lib/us_core_test_kit/igs/us_core_600/CodeSystem-observation-category.json

@@ -0,0 +1,83 @@
+{
+  "resourceType" : "CodeSystem",
+  "id" : "observation-category",
+  "meta" : {
+    "lastUpdated" : "2020-04-09T21:10:28.568+00:00",
+    "profile" : ["http://hl7.org/fhir/StructureDefinition/shareablecodesystem"]
+  },
+  "text" : {
+    "status" : "generated",
+    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p>This code system <code>http://terminology.hl7.org/CodeSystem/observation-category</code> defines the following codes:</p><table class=\"codes\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td><td><b>Definition</b></td></tr><tr><td style=\"white-space:nowrap\">social-history<a name=\"observation-category-social-history\"> </a></td><td>Social History</td><td>Social History Observations define the patient's occupational, personal (e.g., lifestyle), social, familial, and environmental history and health risk factors that may impact the patient's health.</td></tr><tr><td style=\"white-space:nowrap\">vital-signs<a name=\"observation-category-vital-signs\"> </a></td><td>Vital Signs</td><td>Clinical observations measure the body's basic functions such as blood pressure, heart rate, respiratory rate, height, weight, body mass index, head circumference, pulse oximetry, temperature, and body surface area.</td></tr><tr><td style=\"white-space:nowrap\">imaging<a name=\"observation-category-imaging\"> </a></td><td>Imaging</td><td>Observations generated by imaging. The scope includes observations regarding plain x-ray, ultrasound, CT, MRI, angiography, echocardiography, and nuclear medicine.</td></tr><tr><td style=\"white-space:nowrap\">laboratory<a name=\"observation-category-laboratory\"> </a></td><td>Laboratory</td><td>The results of observations generated by laboratories.  Laboratory results are typically generated by laboratories providing analytic services in areas such as chemistry, hematology, serology, histology, cytology, anatomic pathology (including digital pathology), microbiology, and/or virology. These observations are based on analysis of specimens obtained from the patient and submitted to the laboratory.</td></tr><tr><td style=\"white-space:nowrap\">procedure<a name=\"observation-category-procedure\"> </a></td><td>Procedure</td><td>Observations generated by other procedures.  This category includes observations resulting from interventional and non-interventional procedures excluding laboratory and imaging (e.g., cardiology catheterization, endoscopy, electrodiagnostics, etc.).  Procedure results are typically generated by a clinician to provide more granular information about component observations made during a procedure.  An example would be when a gastroenterologist reports the size of a polyp observed during a colonoscopy.</td></tr><tr><td style=\"white-space:nowrap\">survey<a name=\"observation-category-survey\"> </a></td><td>Survey</td><td>Assessment tool/survey instrument observations (e.g., Apgar Scores, Montreal Cognitive Assessment (MoCA)).</td></tr><tr><td style=\"white-space:nowrap\">exam<a name=\"observation-category-exam\"> </a></td><td>Exam</td><td>Observations generated by physical exam findings including direct observations made by a clinician and use of simple instruments and the result of simple maneuvers performed directly on the patient's body.</td></tr><tr><td style=\"white-space:nowrap\">therapy<a name=\"observation-category-therapy\"> </a></td><td>Therapy</td><td>Observations generated by non-interventional treatment protocols (e.g. occupational, physical, radiation, nutritional and medication therapy)</td></tr><tr><td style=\"white-space:nowrap\">activity<a name=\"observation-category-activity\"> </a></td><td>Activity</td><td>Observations that measure or record any bodily activity that enhances or maintains physical fitness and overall health and wellness.  Not under direct supervision of practitioner such as a physical therapist. (e.g., laps swum, steps, sleep data)</td></tr></table></div>"
+  },
+  "extension" : [{
+    "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
+    "valueCode" : "oo"
+  }],
+  "url" : "http://terminology.hl7.org/CodeSystem/observation-category",
+  "identifier" : [{
+    "system" : "urn:ietf:rfc:3986",
+    "value" : "urn:oid:2.16.840.1.113883.4.642.1.1125"
+  }],
+  "version" : "0.1.0",
+  "name" : "ObservationCategoryCodes",
+  "title" : "Observation Category Codes",
+  "status" : "draft",
+  "experimental" : false,
+  "date" : "2023-02-25T11:07:30-07:00",
+  "publisher" : "FHIR Project team",
+  "contact" : [{
+    "telecom" : [{
+      "system" : "url",
+      "value" : "http://hl7.org/fhir"
+    }]
+  }],
+  "description" : "Observation Category codes.",
+  "caseSensitive" : true,
+  "valueSet" : "http://terminology.hl7.org/ValueSet/observation-category",
+  "content" : "complete",
+  "concept" : [{
+    "code" : "social-history",
+    "display" : "Social History",
+    "definition" : "Social History Observations define the patient's occupational, personal (e.g., lifestyle), social, familial, and environmental history and health risk factors that may impact the patient's health."
+  },
+  {
+    "code" : "vital-signs",
+    "display" : "Vital Signs",
+    "definition" : "Clinical observations measure the body's basic functions such as blood pressure, heart rate, respiratory rate, height, weight, body mass index, head circumference, pulse oximetry, temperature, and body surface area."
+  },
+  {
+    "code" : "imaging",
+    "display" : "Imaging",
+    "definition" : "Observations generated by imaging. The scope includes observations regarding plain x-ray, ultrasound, CT, MRI, angiography, echocardiography, and nuclear medicine."
+  },
+  {
+    "code" : "laboratory",
+    "display" : "Laboratory",
+    "definition" : "The results of observations generated by laboratories.  Laboratory results are typically generated by laboratories providing analytic services in areas such as chemistry, hematology, serology, histology, cytology, anatomic pathology (including digital pathology), microbiology, and/or virology. These observations are based on analysis of specimens obtained from the patient and submitted to the laboratory."
+  },
+  {
+    "code" : "procedure",
+    "display" : "Procedure",
+    "definition" : "Observations generated by other procedures.  This category includes observations resulting from interventional and non-interventional procedures excluding laboratory and imaging (e.g., cardiology catheterization, endoscopy, electrodiagnostics, etc.).  Procedure results are typically generated by a clinician to provide more granular information about component observations made during a procedure.  An example would be when a gastroenterologist reports the size of a polyp observed during a colonoscopy."
+  },
+  {
+    "code" : "survey",
+    "display" : "Survey",
+    "definition" : "Assessment tool/survey instrument observations (e.g., Apgar Scores, Montreal Cognitive Assessment (MoCA))."
+  },
+  {
+    "code" : "exam",
+    "display" : "Exam",
+    "definition" : "Observations generated by physical exam findings including direct observations made by a clinician and use of simple instruments and the result of simple maneuvers performed directly on the patient's body."
+  },
+  {
+    "code" : "therapy",
+    "display" : "Therapy",
+    "definition" : "Observations generated by non-interventional treatment protocols (e.g. occupational, physical, radiation, nutritional and medication therapy)"
+  },
+  {
+    "code" : "activity",
+    "display" : "Activity",
+    "definition" : "Observations that measure or record any bodily activity that enhances or maintains physical fitness and overall health and wellness.  Not under direct supervision of practitioner such as a physical therapist. (e.g., laps swum, steps, sleep data)"
+  }]
+}

data/lib/us_core_test_kit/igs/us_core_600/StructureDefinition-condition-assertedDate.json

@@ -0,0 +1,280 @@
+{
+  "resourceType": "StructureDefinition",
+  "id": "condition-assertedDate",
+  "extension": [
+    {
+      "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
+      "valueCode": "pc"
+    },
+    {
+      "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm",
+      "valueInteger": 1
+    }
+  ],
+  "url": "http://hl7.org/fhir/StructureDefinition/condition-assertedDate",
+  "version": "4.0.1",
+  "name": "assertedDate",
+  "title": "assertedDate",
+  "status": "draft",
+  "date": "2015-02-21",
+  "publisher": "Health Level Seven, Inc. - FHIR WG",
+  "contact": [
+    {
+      "telecom": [
+        {
+          "system": "url",
+          "value": "HL7"
+        }
+      ]
+    }
+  ],
+  "description": "The date on which the existence of the Condition was first asserted or acknowledged.",
+  "fhirVersion": "4.0.1",
+  "mapping": [
+    {
+      "identity": "rim",
+      "uri": "http://hl7.org/v3",
+      "name": "RIM Mapping"
+    }
+  ],
+  "kind": "complex-type",
+  "abstract": false,
+  "context": [
+    {
+      "type": "element",
+      "expression": "Condition"
+    }
+  ],
+  "type": "Extension",
+  "baseDefinition": "http://hl7.org/fhir/StructureDefinition/Extension",
+  "derivation": "constraint",
+  "snapshot": {
+    "element": [
+      {
+        "id": "Extension",
+        "path": "Extension",
+        "short": "Date the condition was first asserted",
+        "definition": "The date on which the existence of the Condition was first asserted or acknowledged.",
+        "comment": "The assertedDate is in the context of the recording practitioner and might not be the same as the recordedDate.",
+        "min": 0,
+        "max": "1",
+        "base": {
+          "path": "Extension",
+          "min": 0,
+          "max": "*"
+        },
+        "condition": [
+          "ele-1"
+        ],
+        "constraint": [
+          {
+            "key": "ele-1",
+            "severity": "error",
+            "human": "All FHIR elements must have a @value or children",
+            "expression": "hasValue() or (children().count() > id.count())",
+            "xpath": "@value|f:*|h:div",
+            "source": "http://hl7.org/fhir/StructureDefinition/Element"
+          },
+          {
+            "key": "ext-1",
+            "severity": "error",
+            "human": "Must have either extensions or value[x], not both",
+            "expression": "extension.exists() != value.exists()",
+            "xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), 'value')])",
+            "source": "http://hl7.org/fhir/StructureDefinition/Extension"
+          }
+        ],
+        "isModifier": false
+      },
+      {
+        "id": "Extension.id",
+        "path": "Extension.id",
+        "representation": [
+          "xmlAttr"
+        ],
+        "short": "Unique id for inter-element referencing",
+        "definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
+        "min": 0,
+        "max": "1",
+        "base": {
+          "path": "Element.id",
+          "min": 0,
+          "max": "1"
+        },
+        "type": [
+          {
+            "extension": [
+              {
+                "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
+                "valueUrl": "string"
+              }
+            ],
+            "code": "http://hl7.org/fhirpath/System.String"
+          }
+        ],
+        "isModifier": false,
+        "isSummary": false,
+        "mapping": [
+          {
+            "identity": "rim",
+            "map": "n/a"
+          }
+        ]
+      },
+      {
+        "id": "Extension.extension",
+        "path": "Extension.extension",
+        "slicing": {
+          "discriminator": [
+            {
+              "type": "value",
+              "path": "url"
+            }
+          ],
+          "description": "Extensions are always sliced by (at least) url",
+          "rules": "open"
+        },
+        "short": "Extension",
+        "definition": "An Extension",
+        "min": 0,
+        "max": "0",
+        "base": {
+          "path": "Element.extension",
+          "min": 0,
+          "max": "*"
+        },
+        "type": [
+          {
+            "code": "Extension"
+          }
+        ],
+        "constraint": [
+          {
+            "key": "ele-1",
+            "severity": "error",
+            "human": "All FHIR elements must have a @value or children",
+            "expression": "hasValue() or (children().count() > id.count())",
+            "xpath": "@value|f:*|h:div",
+            "source": "http://hl7.org/fhir/StructureDefinition/Element"
+          },
+          {
+            "key": "ext-1",
+            "severity": "error",
+            "human": "Must have either extensions or value[x], not both",
+            "expression": "extension.exists() != value.exists()",
+            "xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
+            "source": "http://hl7.org/fhir/StructureDefinition/Extension"
+          }
+        ],
+        "isModifier": false,
+        "isSummary": false
+      },
+      {
+        "id": "Extension.url",
+        "path": "Extension.url",
+        "representation": [
+          "xmlAttr"
+        ],
+        "short": "identifies the meaning of the extension",
+        "definition": "Source of the definition for the extension code - a logical name or a URL.",
+        "comment": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.",
+        "min": 1,
+        "max": "1",
+        "base": {
+          "path": "Extension.url",
+          "min": 1,
+          "max": "1"
+        },
+        "type": [
+          {
+            "extension": [
+              {
+                "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
+                "valueUrl": "uri"
+              }
+            ],
+            "code": "http://hl7.org/fhirpath/System.String"
+          }
+        ],
+        "fixedUri": "http://hl7.org/fhir/StructureDefinition/condition-assertedDate",
+        "isModifier": false,
+        "isSummary": false,
+        "mapping": [
+          {
+            "identity": "rim",
+            "map": "N/A"
+          }
+        ]
+      },
+      {
+        "id": "Extension.value[x]",
+        "path": "Extension.value[x]",
+        "short": "Value of extension",
+        "definition": "Value of extension - must be one of a constrained set of the data types (see [Extensibility](http://hl7.org/fhir/extensibility.html) for a list).",
+        "min": 1,
+        "max": "1",
+        "base": {
+          "path": "Extension.value[x]",
+          "min": 0,
+          "max": "1"
+        },
+        "type": [
+          {
+            "code": "dateTime"
+          }
+        ],
+        "constraint": [
+          {
+            "key": "ele-1",
+            "severity": "error",
+            "human": "All FHIR elements must have a @value or children",
+            "expression": "hasValue() or (children().count() > id.count())",
+            "xpath": "@value|f:*|h:div",
+            "source": "http://hl7.org/fhir/StructureDefinition/Element"
+          }
+        ],
+        "isModifier": false,
+        "isSummary": false,
+        "mapping": [
+          {
+            "identity": "rim",
+            "map": "N/A"
+          }
+        ]
+      }
+    ]
+  },
+  "differential": {
+    "element": [
+      {
+        "id": "Extension",
+        "path": "Extension",
+        "short": "Date the condition was first asserted",
+        "definition": "The date on which the existence of the Condition was first asserted or acknowledged.",
+        "comment": "The assertedDate is in the context of the recording practitioner and might not be the same as the recordedDate.",
+        "min": 0,
+        "max": "1"
+      },
+      {
+        "id": "Extension.extension",
+        "path": "Extension.extension",
+        "max": "0"
+      },
+      {
+        "id": "Extension.url",
+        "path": "Extension.url",
+        "fixedUri": "http://hl7.org/fhir/StructureDefinition/condition-assertedDate"
+      },
+      {
+        "id": "Extension.value[x]",
+        "path": "Extension.value[x]",
+        "min": 1,
+        "type": [
+          {
+            "code": "dateTime"
+          }
+        ]
+      }
+    ]
+  }
+}

data/lib/us_core_test_kit/igs/us_core_600/ValueSet-observation-category.json

@@ -0,0 +1,48 @@
+{
+  "resourceType" : "ValueSet",
+  "id" : "observation-category",
+  "meta" : {
+    "lastUpdated" : "2019-11-01T09:29:23.356+11:00",
+    "profile" : ["http://hl7.org/fhir/StructureDefinition/shareablevalueset"]
+  },
+  "text" : {
+    "status" : "generated",
+    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><h2>Observation Category Codes</h2><div><p>Observation Category codes.</p>\n</div><p>This value set includes codes from the following code systems:</p><ul><li>Include all codes defined in <a href=\"codesystem-observation-category.html\"><code>http://terminology.hl7.org/CodeSystem/observation-category</code></a></li></ul></div>"
+  },
+  "extension" : [{
+    "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
+    "valueCode" : "oo"
+  },
+  {
+    "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status",
+    "valueCode" : "draft"
+  },
+  {
+    "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm",
+    "valueInteger" : 1
+  }],
+  "url" : "http://hl7.org/fhir/ValueSet/observation-category",
+  "identifier" : [{
+    "system" : "urn:ietf:rfc:3986",
+    "value" : "urn:oid:2.16.840.1.113883.4.642.3.403"
+  }],
+  "version" : "4.0.1",
+  "name" : "ObservationCategoryCodes",
+  "title" : "Observation Category Codes",
+  "status" : "draft",
+  "experimental" : false,
+  "date" : "2019-11-01T09:29:23+11:00",
+  "publisher" : "FHIR Project team",
+  "contact" : [{
+    "telecom" : [{
+      "system" : "url",
+      "value" : "http://hl7.org/fhir"
+    }]
+  }],
+  "description" : "Observation Category codes.",
+  "compose" : {
+    "include" : [{
+      "system" : "http://terminology.hl7.org/CodeSystem/observation-category"
+    }]
+  }
+}

data/lib/us_core_test_kit/igs/us_core_600/ValueSet-servicerequest-category.json

@@ -0,0 +1,69 @@
+{
+  "resourceType" : "ValueSet",
+  "id" : "servicerequest-category",
+  "meta" : {
+    "lastUpdated" : "2019-11-01T09:29:23.356+11:00",
+    "profile" : ["http://hl7.org/fhir/StructureDefinition/shareablevalueset"]
+  },
+  "text" : {
+    "status" : "generated",
+    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><h2>Service Request Category Codes</h2><div><p>An example value set of SNOMED CT concepts that can classify a requested service</p>\n</div><p><b>Copyright Statement:</b></p><div><p>This specification includes content from SNOMED Clinical Terms® (SNOMED CT®) which is copyright of the International Health Terminology Standards Development Organisation (IHTSDO). Implementers of these specifications must have the appropriate SNOMED CT Affiliate license - for more information contact http://www.snomed.org/snomed-ct/get-snomed-ct  or info@snomed.org.</p>\n</div><p>This value set includes codes from the following code systems:</p><ul><li>Include these codes as defined in <a href=\"http://www.snomed.org/\"><code>http://snomed.info/sct</code></a><table class=\"none\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td></tr><tr><td><a href=\"http://browser.ihtsdotools.org/?perspective=full&amp;conceptId1=108252007\">108252007</a></td><td>Laboratory procedure</td><td/></tr><tr><td><a href=\"http://browser.ihtsdotools.org/?perspective=full&amp;conceptId1=363679005\">363679005</a></td><td>Imaging</td><td/></tr><tr><td><a href=\"http://browser.ihtsdotools.org/?perspective=full&amp;conceptId1=409063005\">409063005</a></td><td>Counselling</td><td/></tr><tr><td><a href=\"http://browser.ihtsdotools.org/?perspective=full&amp;conceptId1=409073007\">409073007</a></td><td>Education</td><td/></tr><tr><td><a href=\"http://browser.ihtsdotools.org/?perspective=full&amp;conceptId1=387713003\">387713003</a></td><td>Surgical procedure</td><td/></tr></table></li></ul></div>"
+  },
+  "extension" : [{
+    "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
+    "valueCode" : "oo"
+  },
+  {
+    "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status",
+    "valueCode" : "draft"
+  },
+  {
+    "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm",
+    "valueInteger" : 1
+  }],
+  "url" : "http://hl7.org/fhir/ValueSet/servicerequest-category",
+  "identifier" : [{
+    "system" : "urn:ietf:rfc:3986",
+    "value" : "urn:oid:2.16.840.1.113883.4.642.3.434"
+  }],
+  "version" : "4.0.1",
+  "name" : "ServiceRequestCategoryCodes",
+  "title" : "Service Request Category Codes",
+  "status" : "draft",
+  "experimental" : false,
+  "date" : "2019-11-01T09:29:23+11:00",
+  "publisher" : "Orders and Observations Workgroup",
+  "contact" : [{
+    "telecom" : [{
+      "system" : "url",
+      "value" : "http://www.hl7.org/Special/committees/orders/index.cfm"
+    }]
+  }],
+  "description" : "An example value set of SNOMED CT concepts that can classify a requested service",
+  "copyright" : "This specification includes content from SNOMED Clinical Terms® (SNOMED CT®) which is copyright of the International Health Terminology Standards Development Organisation (IHTSDO). Implementers of these specifications must have the appropriate SNOMED CT Affiliate license - for more information contact http://www.snomed.org/snomed-ct/get-snomed-ct  or info@snomed.org.",
+  "compose" : {
+    "include" : [{
+      "system" : "http://snomed.info/sct",
+      "concept" : [{
+        "code" : "108252007",
+        "display" : "Laboratory procedure"
+      },
+      {
+        "code" : "363679005",
+        "display" : "Imaging"
+      },
+      {
+        "code" : "409063005",
+        "display" : "Counselling"
+      },
+      {
+        "code" : "409073007",
+        "display" : "Education"
+      },
+      {
+        "code" : "387713003",
+        "display" : "Surgical procedure"
+      }]
+    }]
+  }
+}

data/lib/us_core_test_kit/reference_resolution_test.rb

@@ -163,11 +163,13 @@ module USCoreTestKit
       # Calling resource_is_valid? causes validation errors to be logged.
       validator = find_validator(:default)
 
-      outcome = FHIR::OperationOutcome.new(JSON.parse(validator.validate(resource, target_profile)))
+      target_profile_with_version =  target_profile.include?('|') ? target_profile : "#{target_profile}|#{metadata.profile_version}"
+
+      outcome = FHIR::OperationOutcome.new(JSON.parse(validator.validate(resource, target_profile_with_version)))
 
       message_hashes = outcome.issue&.map { |issue| validator.message_hash_from_issue(issue, resource) } || []
 
-      message_hashes.concat(validator.additional_validation_messages(resource, target_profile))
+      message_hashes.concat(validator.additional_validation_messages(resource, target_profile_with_version))
 
       validator.filter_messages(message_hashes)
 

data/lib/us_core_test_kit/version.rb

@@ -1,5 +1,5 @@
 # frozen_string_literal: true
 
 module USCoreTestKit
-  VERSION = '0.4.7'
+  VERSION = '0.5.0'
 end

data/lib/us_core_test_kit.rb

@@ -1,3 +1,4 @@
 require_relative 'us_core_test_kit/generated/v3.1.1/us_core_test_suite'
 require_relative 'us_core_test_kit/generated/v4.0.0/us_core_test_suite'
 require_relative 'us_core_test_kit/generated/v5.0.1/us_core_test_suite'
+require_relative 'us_core_test_kit/generated/v6.0.0/us_core_test_suite'