us_core_test_kit 0.4.1 → 0.4.2

data/lib/us_core_test_kit/generated/v3.1.1/provenance/metadata.yml

@@ -78,42 +78,6 @@
 - Provenance.entity.role
 - Provenance.entity.what
 :bindings:
-- :type: code
-  :strength: preferred
-  :system: http://hl7.org/fhir/ValueSet/languages
-  :path: language
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://terminology.hl7.org/ValueSet/v3-PurposeOfUse
-  :path: reason
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/provenance-activity-type
-  :path: activity
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/us/core/ValueSet/us-core-provenance-participant-type
-  :path: agent.type
-- :type: CodeableConcept
-  :strength: example
-  :system: http://hl7.org/fhir/ValueSet/security-role-type
-  :path: agent.role
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/provenance-agent-type
-  :path: agent.type
-- :type: CodeableConcept
-  :strength: example
-  :system: http://hl7.org/fhir/ValueSet/security-role-type
-  :path: agent.role
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/provenance-agent-type
-  :path: agent.type
-- :type: CodeableConcept
-  :strength: example
-  :system: http://hl7.org/fhir/ValueSet/security-role-type
-  :path: agent.role
 - :type: code
   :strength: required
   :system: http://hl7.org/fhir/ValueSet/provenance-entity-role

data/lib/us_core_test_kit/generated/v3.1.1/pulse_oximetry/metadata.yml

@@ -241,98 +241,22 @@
 - Observation.component.value[x].system
 - Observation.component.value[x].code
 :bindings:
-- :type: code
-  :strength: preferred
-  :system: http://hl7.org/fhir/ValueSet/languages
-  :path: language
 - :type: code
   :strength: required
   :system: http://hl7.org/fhir/ValueSet/observation-status
   :path: status
-- :type: CodeableConcept
-  :strength: preferred
-  :system: http://hl7.org/fhir/ValueSet/observation-category
-  :path: category
-- :type: CodeableConcept
-  :strength: preferred
-  :system: http://hl7.org/fhir/ValueSet/observation-category
-  :path: category
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/observation-vitalsignresult
-  :path: code
 - :type: code
   :strength: required
   :system: http://hl7.org/fhir/ValueSet/quantity-comparator
   :path: value.comparator
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/data-absent-reason
-  :path: dataAbsentReason
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/observation-interpretation
-  :path: interpretation
-- :type: CodeableConcept
-  :strength: example
-  :system: http://hl7.org/fhir/ValueSet/body-site
-  :path: bodySite
-- :type: CodeableConcept
-  :strength: example
-  :system: http://hl7.org/fhir/ValueSet/observation-methods
-  :path: method
-- :type: CodeableConcept
-  :strength: preferred
-  :system: http://hl7.org/fhir/ValueSet/referencerange-meaning
-  :path: referenceRange.type
-- :type: CodeableConcept
-  :strength: example
-  :system: http://hl7.org/fhir/ValueSet/referencerange-appliesto
-  :path: referenceRange.appliesTo
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/observation-vitalsignresult
-  :path: component.code
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/data-absent-reason
-  :path: component.dataAbsentReason
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/observation-interpretation
-  :path: component.interpretation
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/observation-vitalsignresult
-  :path: component.code
 - :type: code
   :strength: required
   :system: http://hl7.org/fhir/ValueSet/quantity-comparator
   :path: component.value.comparator
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/data-absent-reason
-  :path: component.dataAbsentReason
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/observation-interpretation
-  :path: component.interpretation
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/observation-vitalsignresult
-  :path: component.code
 - :type: code
   :strength: required
   :system: http://hl7.org/fhir/ValueSet/quantity-comparator
   :path: component.value.comparator
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/data-absent-reason
-  :path: component.dataAbsentReason
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/observation-interpretation
-  :path: component.interpretation
 :references:
 - :path: Observation.basedOn
   :profiles:

data/lib/us_core_test_kit/generated/v3.1.1/resprate/metadata.yml

@@ -193,70 +193,18 @@
 - Observation.value[x].code
 - Observation.component.code
 :bindings:
-- :type: code
-  :strength: preferred
-  :system: http://hl7.org/fhir/ValueSet/languages
-  :path: language
 - :type: code
   :strength: required
   :system: http://hl7.org/fhir/ValueSet/observation-status
   :path: status
-- :type: CodeableConcept
-  :strength: preferred
-  :system: http://hl7.org/fhir/ValueSet/observation-category
-  :path: category
-- :type: CodeableConcept
-  :strength: preferred
-  :system: http://hl7.org/fhir/ValueSet/observation-category
-  :path: category
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/observation-vitalsignresult
-  :path: code
 - :type: code
   :strength: required
   :system: http://hl7.org/fhir/ValueSet/quantity-comparator
   :path: value.comparator
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/data-absent-reason
-  :path: dataAbsentReason
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/observation-interpretation
-  :path: interpretation
-- :type: CodeableConcept
-  :strength: example
-  :system: http://hl7.org/fhir/ValueSet/body-site
-  :path: bodySite
-- :type: CodeableConcept
-  :strength: example
-  :system: http://hl7.org/fhir/ValueSet/observation-methods
-  :path: method
-- :type: CodeableConcept
-  :strength: preferred
-  :system: http://hl7.org/fhir/ValueSet/referencerange-meaning
-  :path: referenceRange.type
-- :type: CodeableConcept
-  :strength: example
-  :system: http://hl7.org/fhir/ValueSet/referencerange-appliesto
-  :path: referenceRange.appliesTo
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/observation-vitalsignresult
-  :path: component.code
 - :type: Quantity
   :strength: required
   :system: http://hl7.org/fhir/ValueSet/ucum-vitals-common
   :path: component.value
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/data-absent-reason
-  :path: component.dataAbsentReason
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/observation-interpretation
-  :path: component.interpretation
 :references:
 - :path: Observation.basedOn
   :profiles:

data/lib/us_core_test_kit/generated/v3.1.1/smokingstatus/metadata.yml

@@ -86,16 +86,7 @@
     :full_paths:
     - Observation.category
     :comparators: {}
-    :values:
-    - social-history
-    - vital-signs
-    - imaging
-    - laboratory
-    - procedure
-    - survey
-    - exam
-    - therapy
-    - activity
+    :values: []
     :type: CodeableConcept
     :contains_multiple: true
     :multiple_or: MAY
@@ -168,62 +159,10 @@
 - Observation.value[x]
 - Observation.component.code
 :bindings:
-- :type: code
-  :strength: preferred
-  :system: http://hl7.org/fhir/ValueSet/languages
-  :path: language
 - :type: code
   :strength: required
   :system: http://hl7.org/fhir/us/core/ValueSet/us-core-observation-smoking-status-status
   :path: status
-- :type: CodeableConcept
-  :strength: preferred
-  :system: http://hl7.org/fhir/ValueSet/observation-category
-  :path: category
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/us/core/ValueSet/us-core-smoking-status-observation-codes
-  :path: code
-- :type: CodeableConcept
-  :strength: preferred
-  :system: http://hl7.org/fhir/us/core/ValueSet/us-core-observation-smokingstatus
-  :path: value
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/data-absent-reason
-  :path: dataAbsentReason
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/observation-interpretation
-  :path: interpretation
-- :type: CodeableConcept
-  :strength: example
-  :system: http://hl7.org/fhir/ValueSet/body-site
-  :path: bodySite
-- :type: CodeableConcept
-  :strength: example
-  :system: http://hl7.org/fhir/ValueSet/observation-methods
-  :path: method
-- :type: CodeableConcept
-  :strength: preferred
-  :system: http://hl7.org/fhir/ValueSet/referencerange-meaning
-  :path: referenceRange.type
-- :type: CodeableConcept
-  :strength: example
-  :system: http://hl7.org/fhir/ValueSet/referencerange-appliesto
-  :path: referenceRange.appliesTo
-- :type: CodeableConcept
-  :strength: example
-  :system: http://hl7.org/fhir/ValueSet/observation-codes
-  :path: component.code
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/data-absent-reason
-  :path: component.dataAbsentReason
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/observation-interpretation
-  :path: component.interpretation
 :references:
 - :path: Observation.basedOn
   :profiles:

data/lib/us_core_test_kit/generated/v3.1.1/us_core_test_suite.rb

@@ -3,6 +3,7 @@ require_relative '../../version'
 require_relative '../../custom_groups/v3.1.1/capability_statement_group'
 require_relative '../../custom_groups/v3.1.1/clinical_notes_guidance_group'
 require_relative '../../custom_groups/data_absent_reason_group'
+require_relative '../../provenance_validator'
 require_relative 'patient_group'
 require_relative 'allergy_intolerance_group'
 require_relative 'care_plan_group'
@@ -37,13 +38,27 @@ module USCoreTestKit
   module USCoreV311
     class USCoreTestSuite < Inferno::TestSuite
       title 'US Core v3.1.1'
+      description %(
+        The US Core Test Kit tests systems for their conformance to the [US Core
+        Implementation Guide](http://hl7.org/fhir/us/core/STU3.1.1).
+
+        Resources are validated with the FHIR Java validator using `tx.fhir.org`
+        as the terminology server. Users should note that the although the ONC
+        Certification (g)(10) Standardized API Test Suite includes tests from
+        this suite, [it uses a different method to perform terminology
+        validation](https://github.com/onc-healthit/onc-certification-g10-test-kit/wiki/FAQ#q-why-do-some-resources-fail-in-us-core-test-kit-with-terminology-validation-errors).
+        As a result, resource validation results may not be consistent between
+        the US Core Test Suite and the ONC Certification (g)(10) Standardized
+        API Test Suite.
+      )
       version VERSION
 
       VALIDATION_MESSAGE_FILTERS = [
         %r{Sub-extension url 'introspect' is not defined by the Extension http://fhir-registry\.smarthealthit\.org/StructureDefinition/oauth-uris$},
         %r{Sub-extension url 'revoke' is not defined by the Extension http://fhir-registry\.smarthealthit\.org/StructureDefinition/oauth-uris$},
         /Observation\.effective\.ofType\(Period\): .*vs-1:/, # Invalid invariant in FHIR v4.0.1
-        /Observation\.effective\.ofType\(Period\): .*us-core-1:/ # Invalid invariant in US Core v3.1.1
+        /Observation\.effective\.ofType\(Period\): .*us-core-1:/, # Invalid invariant in US Core v3.1.1
+        /Provenance.agent\[\d*\]: Rule provenance-1/ #Invalid invariant in US Core v5.0.1
       ].freeze
 
       def self.metadata
@@ -57,6 +72,10 @@ module USCoreTestKit
         exclude_message do |message|
           VALIDATION_MESSAGE_FILTERS.any? { |filter| filter.match? message.message }
         end
+
+        perform_additional_validation do |resource, profile_url|
+          ProvenanceValidator.validate(resource) if resource.instance_of?(FHIR::Provenance)
+        end
       end
 
       id :us_core_v311

data/lib/us_core_test_kit/generated/v4.0.0/allergy_intolerance/metadata.yml

@@ -59,10 +59,7 @@
     :full_paths:
     - AllergyIntolerance.clinicalStatus
     :comparators: {}
-    :values:
-    - active
-    - inactive
-    - resolved
+    :values: []
     :type: CodeableConcept
     :contains_multiple: false
     :multiple_or: MAY
@@ -89,10 +86,6 @@
 - AllergyIntolerance.patient
 - AllergyIntolerance.reaction.manifestation
 :bindings:
-- :type: code
-  :strength: preferred
-  :system: http://hl7.org/fhir/ValueSet/languages
-  :path: language
 - :type: CodeableConcept
   :strength: required
   :system: http://hl7.org/fhir/ValueSet/allergyintolerance-clinical
@@ -113,26 +106,10 @@
   :strength: required
   :system: http://hl7.org/fhir/ValueSet/allergy-intolerance-criticality
   :path: criticality
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1186.8
-  :path: code
-- :type: CodeableConcept
-  :strength: example
-  :system: http://hl7.org/fhir/ValueSet/substance-code
-  :path: reaction.substance
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/clinical-findings
-  :path: reaction.manifestation
 - :type: code
   :strength: required
   :system: http://hl7.org/fhir/ValueSet/reaction-event-severity
   :path: reaction.severity
-- :type: CodeableConcept
-  :strength: example
-  :system: http://hl7.org/fhir/ValueSet/route-codes
-  :path: reaction.exposureRoute
 :references:
 - :path: AllergyIntolerance.patient
   :profiles:

data/lib/us_core_test_kit/generated/v4.0.0/blood_pressure/metadata.yml

@@ -213,98 +213,18 @@
 - Observation.component.value[x].system
 - Observation.component.value[x].code
 :bindings:
-- :type: code
-  :strength: preferred
-  :system: http://hl7.org/fhir/ValueSet/languages
-  :path: language
 - :type: code
   :strength: required
   :system: http://hl7.org/fhir/ValueSet/observation-status
   :path: status
-- :type: CodeableConcept
-  :strength: preferred
-  :system: http://hl7.org/fhir/ValueSet/observation-category
-  :path: category
-- :type: CodeableConcept
-  :strength: preferred
-  :system: http://hl7.org/fhir/ValueSet/observation-category
-  :path: category
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/us/core/ValueSet/us-core-vital-signs
-  :path: code
-- :type: Quantity
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/ucum-vitals-common
-  :path: value
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/data-absent-reason
-  :path: dataAbsentReason
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/observation-interpretation
-  :path: interpretation
-- :type: CodeableConcept
-  :strength: example
-  :system: http://hl7.org/fhir/ValueSet/body-site
-  :path: bodySite
-- :type: CodeableConcept
-  :strength: example
-  :system: http://hl7.org/fhir/ValueSet/observation-methods
-  :path: method
-- :type: CodeableConcept
-  :strength: preferred
-  :system: http://hl7.org/fhir/ValueSet/referencerange-meaning
-  :path: referenceRange.type
-- :type: CodeableConcept
-  :strength: example
-  :system: http://hl7.org/fhir/ValueSet/referencerange-appliesto
-  :path: referenceRange.appliesTo
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/us/core/ValueSet/us-core-vital-signs
-  :path: component.code
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/data-absent-reason
-  :path: component.dataAbsentReason
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/observation-interpretation
-  :path: component.interpretation
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/us/core/ValueSet/us-core-vital-signs
-  :path: component.code
 - :type: code
   :strength: required
   :system: http://hl7.org/fhir/ValueSet/quantity-comparator
   :path: component.value.comparator
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/data-absent-reason
-  :path: component.dataAbsentReason
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/observation-interpretation
-  :path: component.interpretation
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/us/core/ValueSet/us-core-vital-signs
-  :path: component.code
 - :type: code
   :strength: required
   :system: http://hl7.org/fhir/ValueSet/quantity-comparator
   :path: component.value.comparator
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/data-absent-reason
-  :path: component.dataAbsentReason
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/observation-interpretation
-  :path: component.interpretation
 :references:
 - :path: Observation.basedOn
   :profiles:

data/lib/us_core_test_kit/generated/v4.0.0/bmi/metadata.yml

@@ -192,70 +192,14 @@
 - Observation.value[x].code
 - Observation.component.code
 :bindings:
-- :type: code
-  :strength: preferred
-  :system: http://hl7.org/fhir/ValueSet/languages
-  :path: language
 - :type: code
   :strength: required
   :system: http://hl7.org/fhir/ValueSet/observation-status
   :path: status
-- :type: CodeableConcept
-  :strength: preferred
-  :system: http://hl7.org/fhir/ValueSet/observation-category
-  :path: category
-- :type: CodeableConcept
-  :strength: preferred
-  :system: http://hl7.org/fhir/ValueSet/observation-category
-  :path: category
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/us/core/ValueSet/us-core-vital-signs
-  :path: code
 - :type: code
   :strength: required
   :system: http://hl7.org/fhir/ValueSet/quantity-comparator
   :path: value.comparator
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/data-absent-reason
-  :path: dataAbsentReason
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/observation-interpretation
-  :path: interpretation
-- :type: CodeableConcept
-  :strength: example
-  :system: http://hl7.org/fhir/ValueSet/body-site
-  :path: bodySite
-- :type: CodeableConcept
-  :strength: example
-  :system: http://hl7.org/fhir/ValueSet/observation-methods
-  :path: method
-- :type: CodeableConcept
-  :strength: preferred
-  :system: http://hl7.org/fhir/ValueSet/referencerange-meaning
-  :path: referenceRange.type
-- :type: CodeableConcept
-  :strength: example
-  :system: http://hl7.org/fhir/ValueSet/referencerange-appliesto
-  :path: referenceRange.appliesTo
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/us/core/ValueSet/us-core-vital-signs
-  :path: component.code
-- :type: Quantity
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/ucum-vitals-common
-  :path: component.value
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/data-absent-reason
-  :path: component.dataAbsentReason
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/observation-interpretation
-  :path: component.interpretation
 :references:
 - :path: Observation.basedOn
   :profiles:

data/lib/us_core_test_kit/generated/v4.0.0/body_height/metadata.yml

@@ -191,26 +191,10 @@
 - Observation.value[x].code
 - Observation.component.code
 :bindings:
-- :type: code
-  :strength: preferred
-  :system: http://hl7.org/fhir/ValueSet/languages
-  :path: language
 - :type: code
   :strength: required
   :system: http://hl7.org/fhir/ValueSet/observation-status
   :path: status
-- :type: CodeableConcept
-  :strength: preferred
-  :system: http://hl7.org/fhir/ValueSet/observation-category
-  :path: category
-- :type: CodeableConcept
-  :strength: preferred
-  :system: http://hl7.org/fhir/ValueSet/observation-category
-  :path: category
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/us/core/ValueSet/us-core-vital-signs
-  :path: code
 - :type: code
   :strength: required
   :system: http://hl7.org/fhir/ValueSet/quantity-comparator
@@ -219,46 +203,6 @@
   :strength: required
   :system: http://hl7.org/fhir/ValueSet/ucum-bodylength
   :path: value.code
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/data-absent-reason
-  :path: dataAbsentReason
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/observation-interpretation
-  :path: interpretation
-- :type: CodeableConcept
-  :strength: example
-  :system: http://hl7.org/fhir/ValueSet/body-site
-  :path: bodySite
-- :type: CodeableConcept
-  :strength: example
-  :system: http://hl7.org/fhir/ValueSet/observation-methods
-  :path: method
-- :type: CodeableConcept
-  :strength: preferred
-  :system: http://hl7.org/fhir/ValueSet/referencerange-meaning
-  :path: referenceRange.type
-- :type: CodeableConcept
-  :strength: example
-  :system: http://hl7.org/fhir/ValueSet/referencerange-appliesto
-  :path: referenceRange.appliesTo
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/us/core/ValueSet/us-core-vital-signs
-  :path: component.code
-- :type: Quantity
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/ucum-vitals-common
-  :path: component.value
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/data-absent-reason
-  :path: component.dataAbsentReason
-- :type: CodeableConcept
-  :strength: extensible
-  :system: http://hl7.org/fhir/ValueSet/observation-interpretation
-  :path: component.interpretation
 :references:
 - :path: Observation.basedOn
   :profiles: