us_core_test_kit 0.11.4 → 0.11.6

data/lib/us_core_test_kit/fhir_resource_navigation.rb

@@ -1,160 +1,7 @@
 require_relative './primitive_type'
 
 module USCoreTestKit
-  module FHIRResourceNavigation
-    DAR_EXTENSION_URL = 'http://hl7.org/fhir/StructureDefinition/data-absent-reason'.freeze
-    PRIMITIVE_DATA_TYPES = FHIR::PRIMITIVES.keys
-
-    def resolve_path(elements, path)
-      elements = Array.wrap(elements)
-      return elements if path.blank?
-
-      paths = path.split(/(?<!hl7)\./)
-      segment = paths.first
-      remaining_path = paths.drop(1).join('.')
-
-      elements.flat_map do |element|
-        child = get_next_value(element, segment)
-        resolve_path(child, remaining_path)
-      end.compact
-    end
-
-    def find_a_value_at(element, path, include_dar: false)
-      return nil if element.nil?
-
-      elements = Array.wrap(element)
-      if path.empty?
-        unless include_dar
-          elements = elements.reject do |el|
-            el.respond_to?(:extension) && el.extension.any? { |ext| ext.url == DAR_EXTENSION_URL}
-          end
-        end
-
-        return elements.find { |el| yield(el) } if block_given?
-        return elements.first
-      end
-
-      path_segments = path.split(/(?<!hl7)\./)
-
-      segment = path_segments.shift.delete_suffix('[x]').gsub(/^class$/, 'local_class').gsub(/\[x\]:/, ':').to_sym
-      no_elements_present =
-        elements.none? do |element|
-        child = get_next_value(element, segment)
-        child.present? || child == false
-      end
-      return nil if no_elements_present
-
-      remaining_path = path_segments.join('.')
-      elements.each do |element|
-        child = get_next_value(element, segment)
-        element_found =
-          if block_given?
-            find_a_value_at(child, remaining_path, include_dar: include_dar) { |value_found| yield(value_found) }
-          else
-            find_a_value_at(child, remaining_path, include_dar: include_dar)
-          end
-        return element_found if element_found.present? || element_found == false
-      end
-
-      nil
-    end
-
-    def get_next_value(element, property)
-      extension_url = property[/(?<=where\(url=').*(?='\))/]
-      if extension_url.present?
-        element.url == extension_url ? element : nil
-      elsif property.to_s.include?(':') && !property.to_s.include?('url')
-        slice = find_slice_via_discriminator(element, property)
-        slice
-      else
-        value = element.send(property)
-        primitive_value = get_primitive_type_value(element, property, value)
-        primitive_value.present? ? primitive_value : value
-      end
-    rescue NoMethodError
-      nil
-    end
-
-    def get_primitive_type_value(element, property, value)
-      source_value = element.source_hash["_#{property}"]
-
-      return nil unless source_value.present?
-
-      primitive_value = USCoreTestKit::PrimitiveType.new(source_value)
-      primitive_value.value = value
-      primitive_value
-    end
-
-    def find_slice_via_discriminator(element, property)
-      element_name = property.to_s.split(':')[0].gsub(/^class$/, 'local_class')
-      slice_name = property.to_s.split(':')[1].gsub(/^class$/, 'local_class')
-      if metadata.present?
-        slice_by_name = metadata.must_supports[:slices].find{ |slice| slice[:slice_name] == slice_name }
-        discriminator = slice_by_name[:discriminator]
-        slices = Array.wrap(element.send(element_name))
-        slices.find do |slice|
-          case discriminator[:type]
-          when 'patternCodeableConcept'
-            slice_value = discriminator[:path].present? ? slice.send("#{discriminator[:path]}")&.coding : slice.coding
-            slice_value&.any? { |coding| coding.code == discriminator[:code] && coding.system == discriminator[:system] }
-          when 'patternCoding'
-            slice_value = discriminator[:path].present? ? slice.send(discriminator[:path]) : slice
-            slice_value&.code == discriminator[:code] && slice_value&.system == discriminator[:system]
-          when 'patternIdentifier'
-            slice.identifier.system == discriminator[:system]
-          when 'value'
-            values = discriminator[:values].map { |value| value.merge(path: value[:path].split('.')) }
-            verify_slice_by_values(slice, values)
-          when 'type'
-            case discriminator[:code]
-            when 'Date'
-              begin
-                Date.parse(slice)
-              rescue ArgumentError
-                false
-              end
-            when 'DateTime'
-              begin
-                DateTime.parse(slice)
-              rescue ArgumentError
-                false
-              end
-            when 'String'
-              slice.is_a? String
-            else
-              slice.is_a? FHIR.const_get(discriminator[:code])
-            end
-          when 'requiredBinding'
-            slice_value = discriminator[:path].present? ? slice.send("#{discriminator[:path]}").coding : slice.coding
-            slice_value {|coding| discriminator[:values].include?(coding.code) }
-          end
-        end
-      else
-        #TODO: Error handling for if this file doesn't have access to metadata for some reason (begin/rescue with StandardError?)
-      end
-    end
-
-    def verify_slice_by_values(element, value_definitions)
-      path_prefixes = value_definitions.map { |value_definition| value_definition[:path].first }.uniq
-      path_prefixes.all? do |path_prefix|
-        value_definitions_for_path =
-          value_definitions
-            .select { |value_definition| value_definition[:path].first == path_prefix }
-            .each { |value_definition| value_definition[:path].shift }
-        find_a_value_at(element, path_prefix) do |el_found|
-          child_element_value_definitions, current_element_value_definitions =
-            value_definitions_for_path.partition { |value_definition| value_definition[:path].present? }
-
-          current_element_values_match =
-            current_element_value_definitions
-              .all? { |value_definition| value_definition[:value] == el_found }
-
-          child_element_values_match =
-            child_element_value_definitions.present? ?
-              verify_slice_by_values(el_found, child_element_value_definitions) : true
-          current_element_values_match && child_element_values_match
-        end
-      end
-    end
-  end
+  # This functionality has been moved to Inferno Core, but this reference is
+  # retained to avoid a breaking change.
+  FHIRResourceNavigation = Inferno::DSL::FHIRResourceNavigation
 end

data/lib/us_core_test_kit/generated/v3.1.1/encounter/encounter_read_test.rb

@@ -19,7 +19,7 @@ module USCoreTestKit
       end
 
       run do
-        perform_read_test(scratch.dig(:references, 'Encounter'))
+        perform_read_test(scratch.dig(:references, 'Encounter'), delayed_reference: true)
       end
     end
   end

data/lib/us_core_test_kit/generated/v3.1.1/metadata.yml

@@ -4133,22 +4133,6 @@
   :must_supports:
     :extensions: []
     :slices:
-    - :slice_id: Observation.component:FlowRate
-      :slice_name: FlowRate
-      :path: component
-      :discriminator:
-        :type: patternCodeableConcept
-        :path: code
-        :code: 3151-8
-        :system: http://loinc.org
-    - :slice_id: Observation.component:Concentration
-      :slice_name: Concentration
-      :path: component
-      :discriminator:
-        :type: patternCodeableConcept
-        :path: code
-        :code: 3150-0
-        :system: http://loinc.org
     - :slice_id: Observation.value[x]:valueQuantity
       :slice_name: valueQuantity
       :path: value[x]
@@ -4175,6 +4159,22 @@
           :value: 59408-5
         - :path: system
           :value: http://loinc.org
+    - :slice_id: Observation.component:FlowRate
+      :slice_name: FlowRate
+      :path: component
+      :discriminator:
+        :type: patternCodeableConcept
+        :path: code
+        :code: 3151-8
+        :system: http://loinc.org
+    - :slice_id: Observation.component:Concentration
+      :slice_name: Concentration
+      :path: component
+      :discriminator:
+        :type: patternCodeableConcept
+        :path: code
+        :code: 3150-0
+        :system: http://loinc.org
     :elements:
     - :path: status
     - :path: category

data/lib/us_core_test_kit/generated/v3.1.1/organization/organization_read_test.rb

@@ -19,7 +19,7 @@ module USCoreTestKit
       end
 
       run do
-        perform_read_test(scratch.dig(:references, 'Organization'))
+        perform_read_test(scratch.dig(:references, 'Organization'), delayed_reference: true)
       end
     end
   end

data/lib/us_core_test_kit/generated/v3.1.1/practitioner/practitioner_read_test.rb

@@ -19,7 +19,7 @@ module USCoreTestKit
       end
 
       run do
-        perform_read_test(scratch.dig(:references, 'Practitioner'))
+        perform_read_test(scratch.dig(:references, 'Practitioner'), delayed_reference: true)
       end
     end
   end

data/lib/us_core_test_kit/generated/v3.1.1/pulse_oximetry/metadata.yml

@@ -143,22 +143,6 @@
 :must_supports:
   :extensions: []
   :slices:
-  - :slice_id: Observation.component:FlowRate
-    :slice_name: FlowRate
-    :path: component
-    :discriminator:
-      :type: patternCodeableConcept
-      :path: code
-      :code: 3151-8
-      :system: http://loinc.org
-  - :slice_id: Observation.component:Concentration
-    :slice_name: Concentration
-    :path: component
-    :discriminator:
-      :type: patternCodeableConcept
-      :path: code
-      :code: 3150-0
-      :system: http://loinc.org
   - :slice_id: Observation.value[x]:valueQuantity
     :slice_name: valueQuantity
     :path: value[x]
@@ -185,6 +169,22 @@
         :value: 59408-5
       - :path: system
         :value: http://loinc.org
+  - :slice_id: Observation.component:FlowRate
+    :slice_name: FlowRate
+    :path: component
+    :discriminator:
+      :type: patternCodeableConcept
+      :path: code
+      :code: 3151-8
+      :system: http://loinc.org
+  - :slice_id: Observation.component:Concentration
+    :slice_name: Concentration
+    :path: component
+    :discriminator:
+      :type: patternCodeableConcept
+      :path: code
+      :code: 3150-0
+      :system: http://loinc.org
   :elements:
   - :path: status
   - :path: category

data/lib/us_core_test_kit/generated/v3.1.1/us_core_test_suite.rb

@@ -63,8 +63,8 @@ module USCoreTestKit
         /Observation\.effective\.ofType\(Period\): .*us-core-1:/, # Invalid invariant in US Core v3.1.1
         /Provenance.agent\[\d*\]: Constraint failed: provenance-1/, #Invalid invariant in US Core v5.0.1
         %r{Unknown Code System 'http://hl7.org/fhir/us/core/CodeSystem/us-core-tags'}, # Validator has an issue with this US Core 5 code system in US Core 6 resource
-        %r{URL value 'http://hl7.org/fhir/us/core/CodeSystem/us-core-tags' does not resolve}, # Validator has an issue with this US Core 5 code system in US Core 6 resource
         /\A\S+: \S+: URL value '.*' does not resolve/,
+        /\A\S+: \S+: No definition could be found for URL value '.*'/,
         %r{Observation.component\[\d+\].value.ofType\(Quantity\): The code provided \(http://unitsofmeasure.org#L/min\) was not found in the value set 'Vital Signs Units'}, # Known issue with the Pulse Oximetry Profile
         %r{Slice 'Observation\.value\[x\]:valueQuantity': a matching slice is required, but not found \(from (http://hl7\.org/fhir/StructureDefinition/bmi\|4\.0\.1|http://hl7\.org/fhir/StructureDefinition/bmi\%7C4\.0\.1)\)}
       ].freeze

data/lib/us_core_test_kit/generated/v4.0.0/blood_pressure/metadata.yml

@@ -142,6 +142,16 @@
 :must_supports:
   :extensions: []
   :slices:
+  - :slice_id: Observation.category:VSCat
+    :slice_name: VSCat
+    :path: category
+    :discriminator:
+      :type: value
+      :values:
+      - :path: coding.code
+        :value: vital-signs
+      - :path: coding.system
+        :value: http://terminology.hl7.org/CodeSystem/observation-category
   - :slice_id: Observation.component:systolic
     :slice_name: systolic
     :path: component
@@ -158,16 +168,6 @@
       :path: code
       :code: 8462-4
       :system: http://loinc.org
-  - :slice_id: Observation.category:VSCat
-    :slice_name: VSCat
-    :path: category
-    :discriminator:
-      :type: value
-      :values:
-      - :path: coding.code
-        :value: vital-signs
-      - :path: coding.system
-        :value: http://terminology.hl7.org/CodeSystem/observation-category
   :elements:
   - :path: status
   - :path: category

data/lib/us_core_test_kit/generated/v4.0.0/encounter/encounter_read_test.rb

@@ -19,7 +19,7 @@ module USCoreTestKit
       end
 
       run do
-        perform_read_test(scratch.dig(:references, 'Encounter'))
+        perform_read_test(scratch.dig(:references, 'Encounter'), delayed_reference: true)
       end
     end
   end

data/lib/us_core_test_kit/generated/v4.0.0/metadata.yml

@@ -3366,6 +3366,16 @@
   :must_supports:
     :extensions: []
     :slices:
+    - :slice_id: Observation.category:VSCat
+      :slice_name: VSCat
+      :path: category
+      :discriminator:
+        :type: value
+        :values:
+        - :path: coding.code
+          :value: vital-signs
+        - :path: coding.system
+          :value: http://terminology.hl7.org/CodeSystem/observation-category
     - :slice_id: Observation.component:systolic
       :slice_name: systolic
       :path: component
@@ -3382,16 +3392,6 @@
         :path: code
         :code: 8462-4
         :system: http://loinc.org
-    - :slice_id: Observation.category:VSCat
-      :slice_name: VSCat
-      :path: category
-      :discriminator:
-        :type: value
-        :values:
-        - :path: coding.code
-          :value: vital-signs
-        - :path: coding.system
-          :value: http://terminology.hl7.org/CodeSystem/observation-category
     :elements:
     - :path: status
     - :path: category
@@ -6258,6 +6258,16 @@
   :must_supports:
     :extensions: []
     :slices:
+    - :slice_id: Observation.category:VSCat
+      :slice_name: VSCat
+      :path: category
+      :discriminator:
+        :type: value
+        :values:
+        - :path: coding.code
+          :value: vital-signs
+        - :path: coding.system
+          :value: http://terminology.hl7.org/CodeSystem/observation-category
     - :slice_id: Observation.code.coding:PulseOx
       :slice_name: PulseOx
       :path: code.coding
@@ -6290,16 +6300,6 @@
         :path: code
         :code: 3150-0
         :system: http://loinc.org
-    - :slice_id: Observation.category:VSCat
-      :slice_name: VSCat
-      :path: category
-      :discriminator:
-        :type: value
-        :values:
-        - :path: coding.code
-          :value: vital-signs
-        - :path: coding.system
-          :value: http://terminology.hl7.org/CodeSystem/observation-category
     :elements:
     - :path: status
     - :path: category
@@ -6876,14 +6876,6 @@
   :must_supports:
     :extensions: []
     :slices:
-    - :slice_id: Observation.category:SocialHistory
-      :slice_name: SocialHistory
-      :path: category
-      :discriminator:
-        :type: patternCodeableConcept
-        :path: ''
-        :code: social-history
-        :system: http://terminology.hl7.org/CodeSystem/observation-category
     - :slice_id: Observation.effective[x]:effectiveDateTime
       :slice_name: effectiveDateTime
       :path: effective[x]
@@ -6896,6 +6888,14 @@
       :discriminator:
         :type: type
         :code: CodeableConcept
+    - :slice_id: Observation.category:SocialHistory
+      :slice_name: SocialHistory
+      :path: category
+      :discriminator:
+        :type: patternCodeableConcept
+        :path: ''
+        :code: social-history
+        :system: http://terminology.hl7.org/CodeSystem/observation-category
     :elements:
     - :path: status
     - :path: category

data/lib/us_core_test_kit/generated/v4.0.0/organization/organization_read_test.rb

@@ -19,7 +19,7 @@ module USCoreTestKit
       end
 
       run do
-        perform_read_test(scratch.dig(:references, 'Organization'))
+        perform_read_test(scratch.dig(:references, 'Organization'), delayed_reference: true)
       end
     end
   end

data/lib/us_core_test_kit/generated/v4.0.0/practitioner/practitioner_read_test.rb

@@ -19,7 +19,7 @@ module USCoreTestKit
       end
 
       run do
-        perform_read_test(scratch.dig(:references, 'Practitioner'))
+        perform_read_test(scratch.dig(:references, 'Practitioner'), delayed_reference: true)
       end
     end
   end

data/lib/us_core_test_kit/generated/v4.0.0/pulse_oximetry/metadata.yml

@@ -143,6 +143,16 @@
 :must_supports:
   :extensions: []
   :slices:
+  - :slice_id: Observation.category:VSCat
+    :slice_name: VSCat
+    :path: category
+    :discriminator:
+      :type: value
+      :values:
+      - :path: coding.code
+        :value: vital-signs
+      - :path: coding.system
+        :value: http://terminology.hl7.org/CodeSystem/observation-category
   - :slice_id: Observation.code.coding:PulseOx
     :slice_name: PulseOx
     :path: code.coding
@@ -175,16 +185,6 @@
       :path: code
       :code: 3150-0
       :system: http://loinc.org
-  - :slice_id: Observation.category:VSCat
-    :slice_name: VSCat
-    :path: category
-    :discriminator:
-      :type: value
-      :values:
-      - :path: coding.code
-        :value: vital-signs
-      - :path: coding.system
-        :value: http://terminology.hl7.org/CodeSystem/observation-category
   :elements:
   - :path: status
   - :path: category

data/lib/us_core_test_kit/generated/v4.0.0/smokingstatus/metadata.yml

@@ -136,14 +136,6 @@
 :must_supports:
   :extensions: []
   :slices:
-  - :slice_id: Observation.category:SocialHistory
-    :slice_name: SocialHistory
-    :path: category
-    :discriminator:
-      :type: patternCodeableConcept
-      :path: ''
-      :code: social-history
-      :system: http://terminology.hl7.org/CodeSystem/observation-category
   - :slice_id: Observation.effective[x]:effectiveDateTime
     :slice_name: effectiveDateTime
     :path: effective[x]
@@ -156,6 +148,14 @@
     :discriminator:
       :type: type
       :code: CodeableConcept
+  - :slice_id: Observation.category:SocialHistory
+    :slice_name: SocialHistory
+    :path: category
+    :discriminator:
+      :type: patternCodeableConcept
+      :path: ''
+      :code: social-history
+      :system: http://terminology.hl7.org/CodeSystem/observation-category
   :elements:
   - :path: status
   - :path: category

data/lib/us_core_test_kit/generated/v4.0.0/us_core_test_suite.rb

@@ -65,8 +65,8 @@ module USCoreTestKit
         /Observation\.effective\.ofType\(Period\): .*us-core-1:/, # Invalid invariant in US Core v3.1.1
         /Provenance.agent\[\d*\]: Constraint failed: provenance-1/, #Invalid invariant in US Core v5.0.1
         %r{Unknown Code System 'http://hl7.org/fhir/us/core/CodeSystem/us-core-tags'}, # Validator has an issue with this US Core 5 code system in US Core 6 resource
-        %r{URL value 'http://hl7.org/fhir/us/core/CodeSystem/us-core-tags' does not resolve}, # Validator has an issue with this US Core 5 code system in US Core 6 resource
         /\A\S+: \S+: URL value '.*' does not resolve/,
+        /\A\S+: \S+: No definition could be found for URL value '.*'/,
         %r{Observation.component\[\d+\].value.ofType\(Quantity\): The code provided \(http://unitsofmeasure.org#L/min\) was not found in the value set 'Vital Signs Units'}, # Known issue with the Pulse Oximetry Profile
         %r{Slice 'Observation\.value\[x\]:valueQuantity': a matching slice is required, but not found \(from (http://hl7\.org/fhir/StructureDefinition/bmi\|4\.0\.1|http://hl7\.org/fhir/StructureDefinition/bmi\%7C4\.0\.1)\)}
       ].freeze

data/lib/us_core_test_kit/generated/v5.0.1/blood_pressure/metadata.yml

@@ -142,6 +142,16 @@
 :must_supports:
   :extensions: []
   :slices:
+  - :slice_id: Observation.category:VSCat
+    :slice_name: VSCat
+    :path: category
+    :discriminator:
+      :type: value
+      :values:
+      - :path: coding.code
+        :value: vital-signs
+      - :path: coding.system
+        :value: http://terminology.hl7.org/CodeSystem/observation-category
   - :slice_id: Observation.component:systolic
     :slice_name: systolic
     :path: component
@@ -158,16 +168,6 @@
       :path: code
       :code: 8462-4
       :system: http://loinc.org
-  - :slice_id: Observation.category:VSCat
-    :slice_name: VSCat
-    :path: category
-    :discriminator:
-      :type: value
-      :values:
-      - :path: coding.code
-        :value: vital-signs
-      - :path: coding.system
-        :value: http://terminology.hl7.org/CodeSystem/observation-category
   :elements:
   - :path: status
   - :path: category

data/lib/us_core_test_kit/generated/v5.0.1/condition_encounter_diagnosis/condition_encounter_diagnosis_must_support_test.rb

@@ -18,8 +18,7 @@ module USCoreTestKit
         * Condition.clinicalStatus
         * Condition.code
         * Condition.encounter
-        * Condition.extension:assertedDate
-        * Condition.onsetDateTime
+        * Condition.onsetDateTime or Condition.extension:assertedDate
         * Condition.recordedDate
         * Condition.subject
         * Condition.verificationStatus

data/lib/us_core_test_kit/generated/v5.0.1/condition_problems_health_concerns/condition_problems_health_concerns_must_support_test.rb

@@ -18,8 +18,7 @@ module USCoreTestKit
         * Condition.category:us-core
         * Condition.clinicalStatus
         * Condition.code
-        * Condition.extension:assertedDate
-        * Condition.onsetDateTime
+        * Condition.onsetDateTime or Condition.extension:assertedDate
         * Condition.recordedDate
         * Condition.subject
         * Condition.verificationStatus