unipept 2.0.0 → 2.1.0
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- checksums.yaml +4 -4
- data/.github/workflows/ci.yml +55 -0
- data/.rubocop.yml +6 -2
- data/.ruby-version +1 -1
- data/Gemfile +5 -8
- data/Gemfile.lock +28 -50
- data/README.md +1 -4
- data/Rakefile +2 -2
- data/VERSION +1 -1
- data/lib/batch_iterator.rb +1 -1
- data/lib/commands/unipept.rb +29 -3
- data/lib/commands/unipept/api_runner.rb +64 -0
- data/lib/commands/unipept/pept2interpro.rb +16 -0
- data/lib/formatters.rb +30 -10
- data/test/commands/unipept/test_pept2ec.rb +140 -0
- data/test/commands/unipept/test_pept2funct.rb +140 -0
- data/test/commands/unipept/test_pept2go.rb +140 -0
- data/test/commands/unipept/test_pept2interpro.rb +140 -0
- data/test/commands/unipept/test_peptinfo.rb +140 -0
- data/test/helper.rb +0 -2
- data/unipept.gemspec +27 -24
- metadata +23 -29
- data/.travis.yml +0 -13