unipept 1.4.0 → 1.4.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (28) hide show
  1. checksums.yaml +4 -4
  2. data/.rubocop.yml +5 -2
  3. data/.travis.yml +4 -5
  4. data/Gemfile +3 -4
  5. data/Gemfile.lock +2 -2
  6. data/Rakefile +5 -7
  7. data/VERSION +1 -1
  8. data/lib/batch_order.rb +1 -0
  9. data/lib/commands/unipept/api_runner.rb +4 -2
  10. data/lib/commands/uniprot.rb +2 -2
  11. data/lib/configuration.rb +1 -1
  12. data/lib/formatters.rb +2 -2
  13. data/lib/server_message.rb +1 -0
  14. data/test/commands/test_peptfilter.rb +23 -23
  15. data/test/commands/test_prot2pept.rb +11 -11
  16. data/test/commands/test_unipept.rb +4 -4
  17. data/test/commands/test_uniprot.rb +25 -25
  18. data/test/commands/unipept/test_api_runner.rb +26 -26
  19. data/test/commands/unipept/test_config.rb +5 -5
  20. data/test/commands/unipept/test_pept2lca.rb +7 -7
  21. data/test/commands/unipept/test_pept2prot.rb +7 -7
  22. data/test/commands/unipept/test_pept2taxa.rb +7 -7
  23. data/test/commands/unipept/test_taxa2lca.rb +5 -5
  24. data/test/commands/unipept/test_taxonomy.rb +7 -7
  25. data/test/helper.rb +2 -2
  26. data/test/test_batch_iterator.rb +4 -4
  27. data/unipept.gemspec +12 -12
  28. metadata +15 -15
data/test/commands/unipept/test_pept2prot.rb CHANGED
@@ -35,14 +35,14 @@ module Unipept
35
35
  def test_help
36
36
  out, _err = capture_io_while do
37
37
  assert_raises SystemExit do
38
- Commands::Unipept.run(%w(pept2prot -h))
38
+ Commands::Unipept.run(%w[pept2prot -h])
39
39
  end
40
40
  end
41
41
  assert(out.include?('show help for this command'))
42
42
 
43
43
  out, _err = capture_io_while do
44
44
  assert_raises SystemExit do
45
- Commands::Unipept.run(%w(pept2prot --help))
45
+ Commands::Unipept.run(%w[pept2prot --help])
46
46
  end
47
47
  end
48
48
  assert(out.include?('show help for this command'))
@@ -50,7 +50,7 @@ module Unipept
50
50
 
51
51
  def test_run
52
52
  out, err = capture_io_while do
53
- Commands::Unipept.run(%w(pept2prot --host http://api.unipept.ugent.be ENFVYIAK))
53
+ Commands::Unipept.run(%w[pept2prot --host http://api.unipept.ugent.be ENFVYIAK])
54
54
  end
55
55
  lines = out.each_line
56
56
  assert_equal('', err)
@@ -60,7 +60,7 @@ module Unipept
60
60
 
61
61
  def test_run_with_fasta_multiple_batches
62
62
  out, err = capture_io_while do
63
- Commands::Unipept.run(%w(pept2prot --host http://api.unipept.ugent.be --batch 2 >test EGGAGSSTGQR ENFVYIAK >tost EGGAGSSTGQR))
63
+ Commands::Unipept.run(%w[pept2prot --host http://api.unipept.ugent.be --batch 2 >test EGGAGSSTGQR ENFVYIAK >tost EGGAGSSTGQR])
64
64
  end
65
65
  lines = out.each_line
66
66
  assert_equal('', err)
@@ -72,7 +72,7 @@ module Unipept
72
72
 
73
73
  def test_run_with_fasta_multiple_batches_and_select
74
74
  out, err = capture_io_while do
75
- Commands::Unipept.run(%w(pept2prot --host http://api.unipept.ugent.be --batch 2 --select uniprot_id >test EGGAGSSTGQR ENFVYIAK >tost EGGAGSSTGQR))
75
+ Commands::Unipept.run(%w[pept2prot --host http://api.unipept.ugent.be --batch 2 --select uniprot_id >test EGGAGSSTGQR ENFVYIAK >tost EGGAGSSTGQR])
76
76
  end
77
77
  lines = out.each_line
78
78
  assert_equal('', err)
@@ -84,7 +84,7 @@ module Unipept
84
84
 
85
85
  def test_run_with_fasta_multiple_batches_json
86
86
  out, err = capture_io_while do
87
- Commands::Unipept.run(%w(pept2prot --host http://api.unipept.ugent.be --batch 2 --format json >test EGGAGSSTGQR ENFVYIAK >tost EGGAGSSTGQR))
87
+ Commands::Unipept.run(%w[pept2prot --host http://api.unipept.ugent.be --batch 2 --format json >test EGGAGSSTGQR ENFVYIAK >tost EGGAGSSTGQR])
88
88
  end
89
89
  lines = out.each_line
90
90
  assert_equal('', err)
@@ -97,7 +97,7 @@ module Unipept
97
97
 
98
98
  def test_run_with_fasta_multiple_batches_xml
99
99
  out, err = capture_io_while do
100
- Commands::Unipept.run(%w(pept2prot --host http://api.unipept.ugent.be --batch 2 --format xml >test EGGAGSSTGQR ENFVYIAK >tost EGGAGSSTGQR))
100
+ Commands::Unipept.run(%w[pept2prot --host http://api.unipept.ugent.be --batch 2 --format xml >test EGGAGSSTGQR ENFVYIAK >tost EGGAGSSTGQR])
101
101
  end
102
102
  lines = out.each_line
103
103
  assert_equal('', err)
data/test/commands/unipept/test_pept2taxa.rb CHANGED
@@ -19,14 +19,14 @@ module Unipept
19
19
  def test_help
20
20
  out, _err = capture_io_while do
21
21
  assert_raises SystemExit do
22
- Commands::Unipept.run(%w(pept2taxa -h))
22
+ Commands::Unipept.run(%w[pept2taxa -h])
23
23
  end
24
24
  end
25
25
  assert(out.include?('show help for this command'))
26
26
 
27
27
  out, _err = capture_io_while do
28
28
  assert_raises SystemExit do
29
- Commands::Unipept.run(%w(pept2taxa --help))
29
+ Commands::Unipept.run(%w[pept2taxa --help])
30
30
  end
31
31
  end
32
32
  assert(out.include?('show help for this command'))
@@ -34,7 +34,7 @@ module Unipept
34
34
 
35
35
  def test_run
36
36
  out, err = capture_io_while do
37
- Commands::Unipept.run(%w(pept2taxa --host http://api.unipept.ugent.be ENFVYIAK))
37
+ Commands::Unipept.run(%w[pept2taxa --host http://api.unipept.ugent.be ENFVYIAK])
38
38
  end
39
39
  lines = out.each_line
40
40
  assert_equal('', err)
@@ -44,7 +44,7 @@ module Unipept
44
44
 
45
45
  def test_run_with_fasta_multiple_batches
46
46
  out, err = capture_io_while do
47
- Commands::Unipept.run(%w(pept2taxa --host http://api.unipept.ugent.be --batch 2 >test EGGAGSSTGQR ENFVYIAK >tost EGGAGSSTGQR))
47
+ Commands::Unipept.run(%w[pept2taxa --host http://api.unipept.ugent.be --batch 2 >test EGGAGSSTGQR ENFVYIAK >tost EGGAGSSTGQR])
48
48
  end
49
49
  lines = out.each_line
50
50
  assert_equal('', err)
@@ -56,7 +56,7 @@ module Unipept
56
56
 
57
57
  def test_run_with_fasta_multiple_batches_and_select
58
58
  out, err = capture_io_while do
59
- Commands::Unipept.run(%w(pept2taxa --host http://api.unipept.ugent.be --batch 2 --select taxon_id >test EGGAGSSTGQR ENFVYIAK >tost EGGAGSSTGQR))
59
+ Commands::Unipept.run(%w[pept2taxa --host http://api.unipept.ugent.be --batch 2 --select taxon_id >test EGGAGSSTGQR ENFVYIAK >tost EGGAGSSTGQR])
60
60
  end
61
61
  lines = out.each_line
62
62
  assert_equal('', err)
@@ -68,7 +68,7 @@ module Unipept
68
68
 
69
69
  def test_run_with_fasta_multiple_batches_json
70
70
  out, err = capture_io_while do
71
- Commands::Unipept.run(%w(pept2taxa --host http://api.unipept.ugent.be --batch 2 --format json >test EGGAGSSTGQR ENFVYIAK >tost EGGAGSSTGQR))
71
+ Commands::Unipept.run(%w[pept2taxa --host http://api.unipept.ugent.be --batch 2 --format json >test EGGAGSSTGQR ENFVYIAK >tost EGGAGSSTGQR])
72
72
  end
73
73
  lines = out.each_line
74
74
  assert_equal('', err)
@@ -81,7 +81,7 @@ module Unipept
81
81
 
82
82
  def test_run_with_fasta_multiple_batches_xml
83
83
  out, err = capture_io_while do
84
- Commands::Unipept.run(%w(pept2taxa --host http://api.unipept.ugent.be --batch 2 --format xml >test EGGAGSSTGQR ENFVYIAK >tost EGGAGSSTGQR))
84
+ Commands::Unipept.run(%w[pept2taxa --host http://api.unipept.ugent.be --batch 2 --format xml >test EGGAGSSTGQR ENFVYIAK >tost EGGAGSSTGQR])
85
85
  end
86
86
  lines = out.each_line
87
87
  assert_equal('', err)
data/test/commands/unipept/test_taxa2lca.rb CHANGED
@@ -19,14 +19,14 @@ module Unipept
19
19
  def test_help
20
20
  out, _err = capture_io_while do
21
21
  assert_raises SystemExit do
22
- Commands::Unipept.run(%w(taxa2lca -h))
22
+ Commands::Unipept.run(%w[taxa2lca -h])
23
23
  end
24
24
  end
25
25
  assert(out.include?('show help for this command'))
26
26
 
27
27
  out, _err = capture_io_while do
28
28
  assert_raises SystemExit do
29
- Commands::Unipept.run(%w(taxa2lca --help))
29
+ Commands::Unipept.run(%w[taxa2lca --help])
30
30
  end
31
31
  end
32
32
  assert(out.include?('show help for this command'))
@@ -34,7 +34,7 @@ module Unipept
34
34
 
35
35
  def test_run
36
36
  out, err = capture_io_while do
37
- Commands::Unipept.run(%w(taxa2lca --host http://api.unipept.ugent.be 216816 1680))
37
+ Commands::Unipept.run(%w[taxa2lca --host http://api.unipept.ugent.be 216816 1680])
38
38
  end
39
39
  lines = out.each_line
40
40
  assert_equal('', err)
@@ -44,7 +44,7 @@ module Unipept
44
44
 
45
45
  def test_run_xml
46
46
  out, err = capture_io_while do
47
- Commands::Unipept.run(%w(taxa2lca --host http://api.unipept.ugent.be --format xml 216816 1680))
47
+ Commands::Unipept.run(%w[taxa2lca --host http://api.unipept.ugent.be --format xml 216816 1680])
48
48
  end
49
49
  lines = out.each_line
50
50
  output = lines.to_a.join('').chomp
@@ -55,7 +55,7 @@ module Unipept
55
55
 
56
56
  def test_run_json
57
57
  out, err = capture_io_while do
58
- Commands::Unipept.run(%w(taxa2lca --host http://api.unipept.ugent.be --format json 216816 1680))
58
+ Commands::Unipept.run(%w[taxa2lca --host http://api.unipept.ugent.be --format json 216816 1680])
59
59
  end
60
60
  lines = out.each_line
61
61
  output = lines.to_a.join('').chomp
data/test/commands/unipept/test_taxonomy.rb CHANGED
@@ -17,14 +17,14 @@ module Unipept
17
17
  def test_help
18
18
  out, _err = capture_io_while do
19
19
  assert_raises SystemExit do
20
- Commands::Unipept.run(%w(taxonomy -h))
20
+ Commands::Unipept.run(%w[taxonomy -h])
21
21
  end
22
22
  end
23
23
  assert(out.include?('show help for this command'))
24
24
 
25
25
  out, _err = capture_io_while do
26
26
  assert_raises SystemExit do
27
- Commands::Unipept.run(%w(taxonomy --help))
27
+ Commands::Unipept.run(%w[taxonomy --help])
28
28
  end
29
29
  end
30
30
  assert(out.include?('show help for this command'))
@@ -32,7 +32,7 @@ module Unipept
32
32
 
33
33
  def test_run
34
34
  out, err = capture_io_while do
35
- Commands::Unipept.run(%w(taxonomy --host http://api.unipept.ugent.be 1))
35
+ Commands::Unipept.run(%w[taxonomy --host http://api.unipept.ugent.be 1])
36
36
  end
37
37
  lines = out.each_line
38
38
  assert_equal('', err)
@@ -42,7 +42,7 @@ module Unipept
42
42
 
43
43
  def test_run_with_fasta_multiple_batches
44
44
  out, err = capture_io_while do
45
- Commands::Unipept.run(%w(taxonomy --host http://api.unipept.ugent.be --batch 2 >test 1 216816 >tost 1))
45
+ Commands::Unipept.run(%w[taxonomy --host http://api.unipept.ugent.be --batch 2 >test 1 216816 >tost 1])
46
46
  end
47
47
  lines = out.each_line
48
48
  assert_equal('', err)
@@ -54,7 +54,7 @@ module Unipept
54
54
 
55
55
  def test_run_with_fasta_multiple_batches_and_select
56
56
  out, err = capture_io_while do
57
- Commands::Unipept.run(%w(taxonomy --host http://api.unipept.ugent.be --batch 2 --select taxon_name >test 1 216816 >tost 1))
57
+ Commands::Unipept.run(%w[taxonomy --host http://api.unipept.ugent.be --batch 2 --select taxon_name >test 1 216816 >tost 1])
58
58
  end
59
59
  lines = out.each_line
60
60
  assert_equal('', err)
@@ -66,7 +66,7 @@ module Unipept
66
66
 
67
67
  def test_run_with_fasta_multiple_batches_json
68
68
  out, err = capture_io_while do
69
- Commands::Unipept.run(%w(taxonomy --host http://api.unipept.ugent.be --batch 2 --format json >test 1 216816 >tost 1))
69
+ Commands::Unipept.run(%w[taxonomy --host http://api.unipept.ugent.be --batch 2 --format json >test 1 216816 >tost 1])
70
70
  end
71
71
  lines = out.each_line
72
72
  assert_equal('', err)
@@ -79,7 +79,7 @@ module Unipept
79
79
 
80
80
  def test_run_with_fasta_multiple_batches_xml
81
81
  out, err = capture_io_while do
82
- Commands::Unipept.run(%w(taxonomy --host http://api.unipept.ugent.be --batch 2 --format xml >test 1 216816 >tost 1))
82
+ Commands::Unipept.run(%w[taxonomy --host http://api.unipept.ugent.be --batch 2 --format xml >test 1 216816 >tost 1])
83
83
  end
84
84
  lines = out.each_line
85
85
  assert_equal('', err)
data/test/helper.rb CHANGED
@@ -6,8 +6,8 @@ Coveralls.wear!
6
6
  begin
7
7
  Bundler.setup(:default, :development)
8
8
  rescue Bundler::BundlerError => e
9
- $stderr.puts e.message
10
- $stderr.puts 'Run `bundle install` to install missing gems'
9
+ warn e.message
10
+ warn 'Run `bundle install` to install missing gems'
11
11
  exit e.status_code
12
12
  end
13
13
 
data/test/test_batch_iterator.rb CHANGED
@@ -16,7 +16,7 @@ module Unipept
16
16
 
17
17
  def test_normal_iterator
18
18
  iterator = BatchIterator.new(2)
19
- data = %w(a b c d e)
19
+ data = %w[a b c d e]
20
20
  out, _err = capture_io_while do
21
21
  iterator.iterate(data.each) do |batch, batch_id, fasta_mapper|
22
22
  assert_nil(fasta_mapper)
@@ -29,7 +29,7 @@ module Unipept
29
29
 
30
30
  def test_fasta_iterator_single_header
31
31
  iterator = BatchIterator.new(2)
32
- data = %w(>h1 a b c d e)
32
+ data = %w[>h1 a b c d e]
33
33
  mappings = []
34
34
  out, _err = capture_io_while do
35
35
  iterator.iterate(data.each) do |batch, batch_id, fasta_mapper|
@@ -47,7 +47,7 @@ module Unipept
47
47
 
48
48
  def test_fasta_iterator_double_header_single_batch
49
49
  iterator = BatchIterator.new(3)
50
- data = %w(>h1 a >h2 b c d e)
50
+ data = %w[>h1 a >h2 b c d e]
51
51
  mappings = []
52
52
  out, _err = capture_io_while do
53
53
  iterator.iterate(data.each) do |batch, batch_id, fasta_mapper|
@@ -68,7 +68,7 @@ module Unipept
68
68
 
69
69
  def test_fasta_iterator_multiple_values
70
70
  iterator = BatchIterator.new(4)
71
- data = %w(>h1 a >h2 a a)
71
+ data = %w[>h1 a >h2 a a]
72
72
  mappings = []
73
73
  out, _err = capture_io_while do
74
74
  iterator.iterate(data.each) do |batch, batch_id, fasta_mapper|
data/unipept.gemspec CHANGED
@@ -2,16 +2,16 @@
2
2
  # DO NOT EDIT THIS FILE DIRECTLY
3
3
  # Instead, edit Jeweler::Tasks in Rakefile, and run 'rake gemspec'
4
4
  # -*- encoding: utf-8 -*-
5
- # stub: unipept 1.4.0 ruby lib
5
+ # stub: unipept 1.4.1 ruby lib
6
6
 
7
7
  Gem::Specification.new do |s|
8
8
  s.name = "unipept".freeze
9
- s.version = "1.4.0"
9
+ s.version = "1.4.1"
10
10
 
11
11
  s.required_rubygems_version = Gem::Requirement.new(">= 0".freeze) if s.respond_to? :required_rubygems_version=
12
12
  s.require_paths = ["lib".freeze]
13
13
  s.authors = ["Toon Willems".freeze, "Bart Mesuere".freeze, "Tom Naessens".freeze]
14
- s.date = "2019-01-18"
14
+ s.date = "2019-01-19"
15
15
  s.description = " Command line interface to the Unipept (http://unipept.ugent.be) web services\n (pept2lca, taxa2lca, pept2taxa, pept2prot and taxonomy) and some utility\n commands for handling proteins using the command line.\n".freeze
16
16
  s.email = "unipept@ugent.be".freeze
17
17
  s.executables = ["unipept".freeze, "prot2pept".freeze, "peptfilter".freeze, "uniprot".freeze]
@@ -85,27 +85,27 @@ Gem::Specification.new do |s|
85
85
  s.specification_version = 4
86
86
 
87
87
  if Gem::Version.new(Gem::VERSION) >= Gem::Version.new('1.2.0') then
88
- s.add_runtime_dependency(%q<cri>.freeze, ["= 2.11"])
88
+ s.add_runtime_dependency(%q<cri>.freeze, ["~> 2.15.3"])
89
89
  s.add_runtime_dependency(%q<typhoeus>.freeze, ["~> 1.1"])
90
- s.add_development_dependency(%q<rake>.freeze, ["~> 10.4"])
90
+ s.add_development_dependency(%q<coveralls>.freeze, ["~> 0"])
91
91
  s.add_development_dependency(%q<minitest>.freeze, ["~> 5.7"])
92
+ s.add_development_dependency(%q<rake>.freeze, ["~> 10.4"])
92
93
  s.add_development_dependency(%q<rubocop>.freeze, ["~> 0.32"])
93
- s.add_development_dependency(%q<coveralls>.freeze, ["~> 0"])
94
94
  else
95
- s.add_dependency(%q<cri>.freeze, ["= 2.11"])
95
+ s.add_dependency(%q<cri>.freeze, ["~> 2.15.3"])
96
96
  s.add_dependency(%q<typhoeus>.freeze, ["~> 1.1"])
97
- s.add_dependency(%q<rake>.freeze, ["~> 10.4"])
97
+ s.add_dependency(%q<coveralls>.freeze, ["~> 0"])
98
98
  s.add_dependency(%q<minitest>.freeze, ["~> 5.7"])
99
+ s.add_dependency(%q<rake>.freeze, ["~> 10.4"])
99
100
  s.add_dependency(%q<rubocop>.freeze, ["~> 0.32"])
100
- s.add_dependency(%q<coveralls>.freeze, ["~> 0"])
101
101
  end
102
102
  else
103
- s.add_dependency(%q<cri>.freeze, ["= 2.11"])
103
+ s.add_dependency(%q<cri>.freeze, ["~> 2.15.3"])
104
104
  s.add_dependency(%q<typhoeus>.freeze, ["~> 1.1"])
105
- s.add_dependency(%q<rake>.freeze, ["~> 10.4"])
105
+ s.add_dependency(%q<coveralls>.freeze, ["~> 0"])
106
106
  s.add_dependency(%q<minitest>.freeze, ["~> 5.7"])
107
+ s.add_dependency(%q<rake>.freeze, ["~> 10.4"])
107
108
  s.add_dependency(%q<rubocop>.freeze, ["~> 0.32"])
108
- s.add_dependency(%q<coveralls>.freeze, ["~> 0"])
109
109
  end
110
110
  end
111
111
 
metadata CHANGED
@@ -1,7 +1,7 @@
1
1
  --- !ruby/object:Gem::Specification
2
2
  name: unipept
3
3
  version: !ruby/object:Gem::Version
4
- version: 1.4.0
4
+ version: 1.4.1
5
5
  platform: ruby
6
6
  authors:
7
7
  - Toon Willems
@@ -10,22 +10,22 @@ authors:
10
10
  autorequire:
11
11
  bindir: bin
12
12
  cert_chain: []
13
- date: 2019-01-18 00:00:00.000000000 Z
13
+ date: 2019-01-19 00:00:00.000000000 Z
14
14
  dependencies:
15
15
  - !ruby/object:Gem::Dependency
16
16
  name: cri
17
17
  requirement: !ruby/object:Gem::Requirement
18
18
  requirements:
19
- - - '='
19
+ - - "~>"
20
20
  - !ruby/object:Gem::Version
21
- version: '2.11'
21
+ version: 2.15.3
22
22
  type: :runtime
23
23
  prerelease: false
24
24
  version_requirements: !ruby/object:Gem::Requirement
25
25
  requirements:
26
- - - '='
26
+ - - "~>"
27
27
  - !ruby/object:Gem::Version
28
- version: '2.11'
28
+ version: 2.15.3
29
29
  - !ruby/object:Gem::Dependency
30
30
  name: typhoeus
31
31
  requirement: !ruby/object:Gem::Requirement
@@ -41,19 +41,19 @@ dependencies:
41
41
  - !ruby/object:Gem::Version
42
42
  version: '1.1'
43
43
  - !ruby/object:Gem::Dependency
44
- name: rake
44
+ name: coveralls
45
45
  requirement: !ruby/object:Gem::Requirement
46
46
  requirements:
47
47
  - - "~>"
48
48
  - !ruby/object:Gem::Version
49
- version: '10.4'
49
+ version: '0'
50
50
  type: :development
51
51
  prerelease: false
52
52
  version_requirements: !ruby/object:Gem::Requirement
53
53
  requirements:
54
54
  - - "~>"
55
55
  - !ruby/object:Gem::Version
56
- version: '10.4'
56
+ version: '0'
57
57
  - !ruby/object:Gem::Dependency
58
58
  name: minitest
59
59
  requirement: !ruby/object:Gem::Requirement
@@ -69,33 +69,33 @@ dependencies:
69
69
  - !ruby/object:Gem::Version
70
70
  version: '5.7'
71
71
  - !ruby/object:Gem::Dependency
72
- name: rubocop
72
+ name: rake
73
73
  requirement: !ruby/object:Gem::Requirement
74
74
  requirements:
75
75
  - - "~>"
76
76
  - !ruby/object:Gem::Version
77
- version: '0.32'
77
+ version: '10.4'
78
78
  type: :development
79
79
  prerelease: false
80
80
  version_requirements: !ruby/object:Gem::Requirement
81
81
  requirements:
82
82
  - - "~>"
83
83
  - !ruby/object:Gem::Version
84
- version: '0.32'
84
+ version: '10.4'
85
85
  - !ruby/object:Gem::Dependency
86
- name: coveralls
86
+ name: rubocop
87
87
  requirement: !ruby/object:Gem::Requirement
88
88
  requirements:
89
89
  - - "~>"
90
90
  - !ruby/object:Gem::Version
91
- version: '0'
91
+ version: '0.32'
92
92
  type: :development
93
93
  prerelease: false
94
94
  version_requirements: !ruby/object:Gem::Requirement
95
95
  requirements:
96
96
  - - "~>"
97
97
  - !ruby/object:Gem::Version
98
- version: '0'
98
+ version: '0.32'
99
99
  description: |2
100
100
  Command line interface to the Unipept (http://unipept.ugent.be) web services
101
101
  (pept2lca, taxa2lca, pept2taxa, pept2prot and taxonomy) and some utility