unipept 0.8.0 → 0.9.0

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@@ -0,0 +1,92 @@
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+ require_relative '../lib/server_message'
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+
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+ module Unipept
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+ class ServerMessageTestCase < Unipept::TestCase
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+ def test_init
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+ assert_equal('http://test_host/api/v1/messages.json', ServerMessage.new('http://test_host').message_url)
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+ end
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+
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+ def test_fetch_server_message
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+ server = ServerMessage.new('http://api.unipept.ugent.be')
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+ assert(!server.fetch_server_message.nil?)
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+ end
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+
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+ def test_print_server_message
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+ server = ServerMessage.new('http://api.unipept.ugent.be')
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+ server.stub(:recently_fetched?, false) do
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+ server.stub(:fetch_server_message, 'message') do
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+ out, _err = capture_io_while do
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+ def $stdout.tty?
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+ true
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+ end
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+ server.print
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+ end
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+ assert_equal('message', out.chomp)
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+ end
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+ end
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+ end
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+
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+ def test_empty_print_server_message
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+ server = ServerMessage.new('http://api.unipept.ugent.be')
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+ server.stub(:recently_fetched?, false) do
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+ server.stub(:fetch_server_message, '') do
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+ out, _err = capture_io_while do
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+ def $stdout.tty?
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+ true
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+ end
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+ server.print
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+ end
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+ assert_equal('', out)
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+ end
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+ end
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+ end
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+
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+ def test_recent_print_server_message
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+ server = ServerMessage.new('http://api.unipept.ugent.be')
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+ server.stub(:recently_fetched?, true) do
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+ server.stub(:fetch_server_message, 'message') do
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+ out, _err = capture_io_while do
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+ def $stdout.tty?
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+ true
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+ end
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+ server.print
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+ end
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+ assert_equal('', out)
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+ end
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+ end
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+ end
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+
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+ def test_no_tty_print_server_message
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+ server = ServerMessage.new('http://api.unipept.ugent.be')
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+ server.stub(:recently_fetched?, false) do
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+ server.stub(:fetch_server_message, 'message') do
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+ out, _err = capture_io_while do
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+ def $stdout.tty?
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+ false
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+ end
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+ server.print
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+ end
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+ assert_equal('', out)
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+ end
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+ end
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+ end
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+
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+ def test_never_recently_fetched
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+ server = ServerMessage.new('http://api.unipept.ugent.be')
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+ server.configuration.delete('last_fetch_date')
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+ assert(!server.recently_fetched?)
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+ end
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+
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+ def test_old_recently_fetched
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+ server = ServerMessage.new('http://api.unipept.ugent.be')
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+ server.configuration['last_fetch_date'] = Time.now - 60 * 60 * 25
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+ assert(!server.recently_fetched?)
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+ end
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+
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+ def test_recently_recently_fetched
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+ server = ServerMessage.new('http://api.unipept.ugent.be')
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+ server.configuration['last_fetch_date'] = Time.now - 60 * 60 * 1
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+ assert(server.recently_fetched?)
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+ end
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+ end
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+ end
data/unipept.gemspec CHANGED
@@ -2,15 +2,15 @@
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  # DO NOT EDIT THIS FILE DIRECTLY
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  # Instead, edit Jeweler::Tasks in Rakefile, and run 'rake gemspec'
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  # -*- encoding: utf-8 -*-
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- # stub: unipept 0.8.0 ruby lib
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+ # stub: unipept 0.9.0 ruby lib
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  Gem::Specification.new do |s|
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  s.name = "unipept"
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- s.version = "0.8.0"
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+ s.version = "0.9.0"
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  s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
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  s.authors = ["Toon Willems", "Bart Mesuere", "Tom Naessens"]
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- s.date = "2015-06-12"
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+ s.date = "2015-06-21"
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  s.description = " Command line interface to the Unipept (http://unipept.ugent.be) web services\n (pept2lca, taxa2lca, pept2taxa and taxonomy) and some utility commands for\n handling proteins using the command line.\n"
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  s.email = "unipept@ugent.be"
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  s.executables = ["unipept", "prot2pept", "peptfilter", "uniprot"]
@@ -48,6 +48,8 @@ Gem::Specification.new do |s|
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  "lib/commands/uniprot.rb",
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  "lib/configuration.rb",
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  "lib/formatters.rb",
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+ "lib/output_writer.rb",
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+ "lib/server_message.rb",
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  "lib/version.rb",
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  "test/commands/test_peptfilter.rb",
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  "test/commands/test_prot2pept.rb",
@@ -62,10 +64,11 @@ Gem::Specification.new do |s|
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  "test/commands/unipept/test_taxonomy.rb",
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  "test/helper.rb",
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  "test/test_bach_order.rb",
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- "test/test_base.rb",
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  "test/test_batch_iterator.rb",
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  "test/test_configuration.rb",
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  "test/test_formatters.rb",
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+ "test/test_output_writer.rb",
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+ "test/test_server_message.rb",
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  "unipept.gemspec"
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  ]
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  s.homepage = "https://github.com/unipept/unipept-cli/"
metadata CHANGED
@@ -1,7 +1,7 @@
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  --- !ruby/object:Gem::Specification
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  name: unipept
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  version: !ruby/object:Gem::Version
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- version: 0.8.0
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+ version: 0.9.0
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  platform: ruby
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  authors:
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  - Toon Willems
@@ -10,7 +10,7 @@ authors:
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  autorequire:
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  bindir: bin
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  cert_chain: []
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- date: 2015-06-12 00:00:00.000000000 Z
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+ date: 2015-06-21 00:00:00.000000000 Z
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  dependencies:
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  - !ruby/object:Gem::Dependency
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  name: cri
@@ -154,6 +154,8 @@ files:
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  - lib/commands/uniprot.rb
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  - lib/configuration.rb
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  - lib/formatters.rb
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+ - lib/output_writer.rb
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+ - lib/server_message.rb
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  - lib/version.rb
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  - test/commands/test_peptfilter.rb
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  - test/commands/test_prot2pept.rb
@@ -168,10 +170,11 @@ files:
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  - test/commands/unipept/test_taxonomy.rb
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  - test/helper.rb
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  - test/test_bach_order.rb
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- - test/test_base.rb
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  - test/test_batch_iterator.rb
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  - test/test_configuration.rb
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  - test/test_formatters.rb
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+ - test/test_output_writer.rb
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+ - test/test_server_message.rb
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  - unipept.gemspec
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  homepage: https://github.com/unipept/unipept-cli/
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  licenses:
data/test/test_base.rb DELETED
@@ -1,6 +0,0 @@
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- module Unipept
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- class BaseTestCase < Unipept::TestCase
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- def test_stub
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- end
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- end
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- end