unipept 0.3.3 → 0.3.4
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- checksums.yaml +4 -4
- data/VERSION +1 -1
- data/bin/uniprot +14 -1
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
|
|
|
1
1
|
---
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|
2
2
|
SHA1:
|
|
3
|
-
metadata.gz:
|
|
4
|
-
data.tar.gz:
|
|
3
|
+
metadata.gz: d8b67a44cab159e17675e6cab96d9fb04e458dc3
|
|
4
|
+
data.tar.gz: 515cd4c0592854704f26a410fe8d024aa411d56c
|
|
5
5
|
SHA512:
|
|
6
|
-
metadata.gz:
|
|
7
|
-
data.tar.gz:
|
|
6
|
+
metadata.gz: eb5a84db577d804aac0d969a90307f4d6f30761a6ddd44489db34aa8b9f0280366cce5ba2672a59cfe7770709396899d8e95cd4866cb32f8a01e5d62be65cbc3
|
|
7
|
+
data.tar.gz: b5a17c748755f7dfba4e8598290818e1ac2bf9d6dcdd6d32cd2df363635fe7b1be3911a90e1a476e97ae002a303e1ec06abe2b81eb362e517b50a4460e7a1bd0
|
data/VERSION
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
0.3.
|
|
1
|
+
0.3.4
|
data/bin/uniprot
CHANGED
|
@@ -1,10 +1,23 @@
|
|
|
1
1
|
#!/usr/bin/env ruby
|
|
2
2
|
require 'faraday'
|
|
3
|
+
require 'cri'
|
|
4
|
+
|
|
3
5
|
Signal.trap("PIPE", "EXIT")
|
|
4
6
|
Signal.trap("INT", "EXIT")
|
|
5
|
-
|
|
7
|
+
|
|
8
|
+
def get_uniprot_entry(arg)
|
|
6
9
|
resp = Faraday.get("http://www.uniprot.org/uniprot/#{arg}.fasta")
|
|
7
10
|
if resp.success?
|
|
8
11
|
puts resp.body.lines.map(&:chomp)[1..-1].join("")
|
|
9
12
|
end
|
|
10
13
|
end
|
|
14
|
+
|
|
15
|
+
if ARGV.empty?
|
|
16
|
+
STDIN.each_line do |pept|
|
|
17
|
+
get_uniprot_entry(pept.chomp)
|
|
18
|
+
end
|
|
19
|
+
else
|
|
20
|
+
ARGV.each do |pept|
|
|
21
|
+
get_uniprot_entry(pept)
|
|
22
|
+
end
|
|
23
|
+
end
|
metadata
CHANGED
|
@@ -1,14 +1,14 @@
|
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
|
2
2
|
name: unipept
|
|
3
3
|
version: !ruby/object:Gem::Version
|
|
4
|
-
version: 0.3.
|
|
4
|
+
version: 0.3.4
|
|
5
5
|
platform: ruby
|
|
6
6
|
authors:
|
|
7
7
|
- Toon Willems
|
|
8
8
|
autorequire:
|
|
9
9
|
bindir: bin
|
|
10
10
|
cert_chain: []
|
|
11
|
-
date: 2014-05-
|
|
11
|
+
date: 2014-05-11 00:00:00.000000000 Z
|
|
12
12
|
dependencies:
|
|
13
13
|
- !ruby/object:Gem::Dependency
|
|
14
14
|
name: shoulda
|