umappp 0.1.6 → 0.2.1

data/vendor/hnswlib/bruteforce.h

@@ -3,150 +3,165 @@
 #include <fstream>
 #include <mutex>
 #include <algorithm>
+#include <assert.h>
 
 namespace hnswlib {
-    template<typename dist_t>
-    class BruteforceSearch : public AlgorithmInterface<dist_t> {
-    public:
-        BruteforceSearch(SpaceInterface <dist_t> *s) {
-
-        }
-        BruteforceSearch(SpaceInterface<dist_t> *s, const std::string &location) {
-            loadIndex(location, s);
-        }
-
-        BruteforceSearch(SpaceInterface <dist_t> *s, size_t maxElements) {
-            maxelements_ = maxElements;
-            data_size_ = s->get_data_size();
-            fstdistfunc_ = s->get_dist_func();
-            dist_func_param_ = s->get_dist_func_param();
-            size_per_element_ = data_size_ + sizeof(labeltype);
-            data_ = (char *) malloc(maxElements * size_per_element_);
-            if (data_ == nullptr)
-                std::runtime_error("Not enough memory: BruteforceSearch failed to allocate data");
-            cur_element_count = 0;
-        }
-
-        ~BruteforceSearch() {
-            free(data_);
-        }
-
-        char *data_;
-        size_t maxelements_;
-        size_t cur_element_count;
-        size_t size_per_element_;
-
-        size_t data_size_;
-        DISTFUNC <dist_t> fstdistfunc_;
-        void *dist_func_param_;
-        std::mutex index_lock;
-
-        std::unordered_map<labeltype,size_t > dict_external_to_internal;
-
-        void addPoint(const void *datapoint, labeltype label) {
-
-            int idx;
-            {
-                std::unique_lock<std::mutex> lock(index_lock);
-
-
-
-                auto search=dict_external_to_internal.find(label);
-                if (search != dict_external_to_internal.end()) {
-                    idx=search->second;
-                }
-                else{
-                    if (cur_element_count >= maxelements_) {
-                        throw std::runtime_error("The number of elements exceeds the specified limit\n");
-                    }
-                    idx=cur_element_count;
-                    dict_external_to_internal[label] = idx;
-                    cur_element_count++;
+template<typename dist_t>
+class BruteforceSearch : public AlgorithmInterface<dist_t> {
+ public:
+    char *data_;
+    size_t maxelements_;
+    size_t cur_element_count;
+    size_t size_per_element_;
+
+    size_t data_size_;
+    DISTFUNC <dist_t> fstdistfunc_;
+    void *dist_func_param_;
+    std::mutex index_lock;
+
+    std::unordered_map<labeltype, size_t > dict_external_to_internal;
+
+
+    BruteforceSearch(SpaceInterface <dist_t> *s)
+        : data_(nullptr),
+            maxelements_(0),
+            cur_element_count(0),
+            size_per_element_(0),
+            data_size_(0),
+            dist_func_param_(nullptr) {
+    }
+
+
+    BruteforceSearch(SpaceInterface<dist_t> *s, const std::string &location)
+        : data_(nullptr),
+            maxelements_(0),
+            cur_element_count(0),
+            size_per_element_(0),
+            data_size_(0),
+            dist_func_param_(nullptr) {
+        loadIndex(location, s);
+    }
+
+
+    BruteforceSearch(SpaceInterface <dist_t> *s, size_t maxElements) {
+        maxelements_ = maxElements;
+        data_size_ = s->get_data_size();
+        fstdistfunc_ = s->get_dist_func();
+        dist_func_param_ = s->get_dist_func_param();
+        size_per_element_ = data_size_ + sizeof(labeltype);
+        data_ = (char *) malloc(maxElements * size_per_element_);
+        if (data_ == nullptr)
+            throw std::runtime_error("Not enough memory: BruteforceSearch failed to allocate data");
+        cur_element_count = 0;
+    }
+
+
+    ~BruteforceSearch() {
+        free(data_);
+    }
+
+
+    void addPoint(const void *datapoint, labeltype label, bool replace_deleted = false) {
+        int idx;
+        {
+            std::unique_lock<std::mutex> lock(index_lock);
+
+            auto search = dict_external_to_internal.find(label);
+            if (search != dict_external_to_internal.end()) {
+                idx = search->second;
+            } else {
+                if (cur_element_count >= maxelements_) {
+                    throw std::runtime_error("The number of elements exceeds the specified limit\n");
                 }
+                idx = cur_element_count;
+                dict_external_to_internal[label] = idx;
+                cur_element_count++;
             }
-            memcpy(data_ + size_per_element_ * idx + data_size_, &label, sizeof(labeltype));
-            memcpy(data_ + size_per_element_ * idx, datapoint, data_size_);
-
-
-
-
-        };
-
-        void removePoint(labeltype cur_external) {
-            size_t cur_c=dict_external_to_internal[cur_external];
-
-            dict_external_to_internal.erase(cur_external);
-
-            labeltype label=*((labeltype*)(data_ + size_per_element_ * (cur_element_count-1) + data_size_));
-            dict_external_to_internal[label]=cur_c;
-            memcpy(data_ + size_per_element_ * cur_c,
-                   data_ + size_per_element_ * (cur_element_count-1),
-                   data_size_+sizeof(labeltype));
-            cur_element_count--;
-
         }
-
-
-        std::priority_queue<std::pair<dist_t, labeltype >>
-        searchKnn(const void *query_data, size_t k) const {
-            std::priority_queue<std::pair<dist_t, labeltype >> topResults;
-            if (cur_element_count == 0) return topResults;
-            for (int i = 0; i < k; i++) {
-                dist_t dist = fstdistfunc_(query_data, data_ + size_per_element_ * i, dist_func_param_);
-                topResults.push(std::pair<dist_t, labeltype>(dist, *((labeltype *) (data_ + size_per_element_ * i +
-                                                                                    data_size_))));
+        memcpy(data_ + size_per_element_ * idx + data_size_, &label, sizeof(labeltype));
+        memcpy(data_ + size_per_element_ * idx, datapoint, data_size_);
+    }
+
+
+    void removePoint(labeltype cur_external) {
+        size_t cur_c = dict_external_to_internal[cur_external];
+
+        dict_external_to_internal.erase(cur_external);
+
+        labeltype label = *((labeltype*)(data_ + size_per_element_ * (cur_element_count-1) + data_size_));
+        dict_external_to_internal[label] = cur_c;
+        memcpy(data_ + size_per_element_ * cur_c,
+                data_ + size_per_element_ * (cur_element_count-1),
+                data_size_+sizeof(labeltype));
+        cur_element_count--;
+    }
+
+
+    std::priority_queue<std::pair<dist_t, labeltype >>
+    searchKnn(const void *query_data, size_t k, BaseFilterFunctor* isIdAllowed = nullptr) const {
+        assert(k <= cur_element_count);
+        std::priority_queue<std::pair<dist_t, labeltype >> topResults;
+        if (cur_element_count == 0) return topResults;
+        for (int i = 0; i < k; i++) {
+            dist_t dist = fstdistfunc_(query_data, data_ + size_per_element_ * i, dist_func_param_);
+            labeltype label = *((labeltype*) (data_ + size_per_element_ * i + data_size_));
+            if ((!isIdAllowed) || (*isIdAllowed)(label)) {
+                topResults.push(std::pair<dist_t, labeltype>(dist, label));
             }
-            dist_t lastdist = topResults.top().first;
-            for (int i = k; i < cur_element_count; i++) {
-                dist_t dist = fstdistfunc_(query_data, data_ + size_per_element_ * i, dist_func_param_);
-                if (dist <= lastdist) {
-                    topResults.push(std::pair<dist_t, labeltype>(dist, *((labeltype *) (data_ + size_per_element_ * i +
-                                                                                        data_size_))));
-                    if (topResults.size() > k)
-                        topResults.pop();
-                    lastdist = topResults.top().first;
+        }
+        dist_t lastdist = topResults.empty() ? std::numeric_limits<dist_t>::max() : topResults.top().first;
+        for (int i = k; i < cur_element_count; i++) {
+            dist_t dist = fstdistfunc_(query_data, data_ + size_per_element_ * i, dist_func_param_);
+            if (dist <= lastdist) {
+                labeltype label = *((labeltype *) (data_ + size_per_element_ * i + data_size_));
+                if ((!isIdAllowed) || (*isIdAllowed)(label)) {
+                    topResults.push(std::pair<dist_t, labeltype>(dist, label));
                 }
+                if (topResults.size() > k)
+                    topResults.pop();
 
+                if (!topResults.empty()) {
+                    lastdist = topResults.top().first;
+                }
             }
-            return topResults;
-        };
-
-        void saveIndex(const std::string &location) {
-            std::ofstream output(location, std::ios::binary);
-            std::streampos position;
-
-            writeBinaryPOD(output, maxelements_);
-            writeBinaryPOD(output, size_per_element_);
-            writeBinaryPOD(output, cur_element_count);
+        }
+        return topResults;
+    }
 
-            output.write(data_, maxelements_ * size_per_element_);
 
-            output.close();
-        }
+    void saveIndex(const std::string &location) {
+        std::ofstream output(location, std::ios::binary);
+        std::streampos position;
 
-        void loadIndex(const std::string &location, SpaceInterface<dist_t> *s) {
+        writeBinaryPOD(output, maxelements_);
+        writeBinaryPOD(output, size_per_element_);
+        writeBinaryPOD(output, cur_element_count);
 
+        output.write(data_, maxelements_ * size_per_element_);
 
-            std::ifstream input(location, std::ios::binary);
-            std::streampos position;
+        output.close();
+    }
 
-            readBinaryPOD(input, maxelements_);
-            readBinaryPOD(input, size_per_element_);
-            readBinaryPOD(input, cur_element_count);
 
-            data_size_ = s->get_data_size();
-            fstdistfunc_ = s->get_dist_func();
-            dist_func_param_ = s->get_dist_func_param();
-            size_per_element_ = data_size_ + sizeof(labeltype);
-            data_ = (char *) malloc(maxelements_ * size_per_element_);
-            if (data_ == nullptr)
-                std::runtime_error("Not enough memory: loadIndex failed to allocate data");
+    void loadIndex(const std::string &location, SpaceInterface<dist_t> *s) {
+        std::ifstream input(location, std::ios::binary);
+        std::streampos position;
 
-            input.read(data_, maxelements_ * size_per_element_);
+        readBinaryPOD(input, maxelements_);
+        readBinaryPOD(input, size_per_element_);
+        readBinaryPOD(input, cur_element_count);
 
-            input.close();
+        data_size_ = s->get_data_size();
+        fstdistfunc_ = s->get_dist_func();
+        dist_func_param_ = s->get_dist_func_param();
+        size_per_element_ = data_size_ + sizeof(labeltype);
+        data_ = (char *) malloc(maxelements_ * size_per_element_);
+        if (data_ == nullptr)
+            throw std::runtime_error("Not enough memory: loadIndex failed to allocate data");
 
-        }
+        input.read(data_, maxelements_ * size_per_element_);
 
-    };
-}
+        input.close();
+    }
+};
+}  // namespace hnswlib