uds_plus_test_kit 1.0.4 → 1.0.5
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- checksums.yaml +4 -4
- data/lib/uds_plus_test_kit/examples/invalid_encounter.ndjson +1 -1
- data/lib/uds_plus_test_kit/examples/invalid_patient.ndjson +2 -2
- data/lib/uds_plus_test_kit/examples/manifest.json +4 -4
- data/lib/uds_plus_test_kit/input_resource_tests/read_data_urls_test.rb +54 -0
- data/lib/uds_plus_test_kit/input_resource_tests/read_patient_reporting_parameters_test.rb +54 -0
- data/lib/uds_plus_test_kit/input_resource_tests/resource_group.rb +8 -0
- data/lib/uds_plus_test_kit/manifest_tests/invalid_type_test.rb +2 -1
- data/lib/uds_plus_test_kit/manifest_tests/uds_plus_test_group.rb +4 -0
- data/lib/uds_plus_test_kit/post_tests/post_group.rb +4 -0
- data/lib/uds_plus_test_kit/validate_clinical_result_test.rb +1 -1
- data/lib/uds_plus_test_kit/validate_data_urls_test.rb +65 -0
- data/lib/uds_plus_test_kit/validate_income_test.rb +1 -1
- data/lib/uds_plus_test_kit/validate_lab_test.rb +1 -1
- data/lib/uds_plus_test_kit/validate_patient_reporting_parameters_test.rb +65 -0
- data/lib/uds_plus_test_kit/validate_sexual_orientation_test.rb +1 -1
- data/lib/uds_plus_test_kit/validate_special_observation_test.rb +1 -1
- data/lib/uds_plus_test_kit/version.rb +1 -1
- metadata +6 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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---
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SHA256:
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metadata.gz:
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4
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data.tar.gz:
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3
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metadata.gz: 719de47995674c07898efc624bfcacb19f5180ee89f05ecfb8cc6d78e6b907f4
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4
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data.tar.gz: 89313bf688921b5bf9242335631eda25ce86055ae4e1b46e529e92b2120f1273
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5
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SHA512:
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6
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metadata.gz:
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7
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data.tar.gz:
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metadata.gz: 38ea29b468539317c810ea9f7592b41b3b4680ded358896a047a10be7aa1aa4513245d1c736b9bcc9c1959173e3f5d5424c490d6e5da9c04b34072933242f641
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7
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data.tar.gz: 8ef032e82432b39b07f1a4758d2843b71139bde66c1c241e16fc3d91eccb394dd9620ead6ab88e564dde364bd233366dd6a2e1fd6339d01c1d8e1ff858504e89
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@@ -1 +1 @@
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1
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-
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{ "resourceType": "Encounter", "id": "example", "meta": { "extension": [ { "url": "http://hl7.org/fhir/StructureDefinition/instance-name", "valueString": "Encounter Example" }, { "url": "http://hl7.org/fhir/StructureDefinition/instance-description", "valueMarkdown": "This is an encounter example for the *US Core Encounter Profile*." } ], "lastUpdated": "2017-05-26T11:56:57.250-04:00", "profile": [ "http://hl7.org/fhir/us/core/StructureDefinition/us-core-encounter" ] }, "text": { "status": "extensions", "div": "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource \"example-1\" Updated \"2017-05-26 11:56:57-0400\" </p><p style=\"margin-bottom: 0px\">Profile:US Core Encounter Profile</p></div><p><b>status</b>: finished</p><p><b>class</b>: ambulatory (Details: http://terminology.hl7.org/CodeSystem/v3-ActCode code AMB = 'ambulatory', stated as 'ambulatory')</p><p><b>type</b>: Office Visit <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/3.1.0/CodeSystem-CPT.html\">Current Procedural Terminology (CPT)</a>#99201)</span></p><p><b>subject</b>: <a href=\"Patient-example.html\">Patient/example</a> \" SHAW\"</p><p><b>period</b>: 2015-11-01 05:00:14-0500 --> 2015-11-01 06:00:14-0500</p></div>" }, "status": "finished", "class": { "system": "http://terminology.hl7.org/CodeSystem/v3-ActCode", "code": "AMB", "display": "ambulatory" }, "type": [ { "coding": [ { "system": "http://www.ama-assn.org/go/cpt", "code": "99201" } ], "text": "Office Visit" } ], "subject": { "reference": "Patient/example", "display" : "Amy" }, "period": { "start": "2015-11-01T17:00:14-05:00", "end": "2015-11-01T18:00:14-05:00" }, "hospitalization" : { "dischargeDisposition" : { "coding" : [ { "system" : "http://www.nubc.org/patient-discharge", "code" : "01", "display" : "Discharged to Home" } ], "text" : "Amy was dischaged to home" } }, "location" : [ { "location" : { "reference" : "Location/hospital", "display" : "Holy Family Hospital" } } ] }
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@@ -1,2 +1,2 @@
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{
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{
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{ "resourceType": "Patient", "id": "smallpop-example", "meta": { "extension": [ { "url": "http://hl7.org/fhir/StructureDefinition/instance-name", "valueString": "Patient Example" }, { "url": "http://hl7.org/fhir/StructureDefinition/instance-description", "valueMarkdown": "This is a patient example for the *US Core Patient Profile*." } ], "profile": [ "http://hl7.org/fhir/us/core/StructureDefinition/us-core-patient" ] }, "text": { "status": "generated", "div": "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Amy V. Baxter </b> female, DoB: 1987-02-20 ( Medical Record Number: 1032702 (USUAL))</p></div>" }, "extension": [ { "extension": [ { "url": "ombCategory", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "2106-3", "display": "White" } }, { "url": "ombCategory", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "1002-5", "display": "American Indian or Alaska Native" } }, { "url": "ombCategory", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "2028-9", "display": "Asian" } }, { "url": "detailed", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "1586-7", "display": "Shoshone" } }, { "url": "detailed", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "2036-2", "display": "Filipino" } }, { "url": "text", "valueString": "Mixed" } ], "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-race" }, { "extension": [ { "url": "ombCategory", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "2135-2", "display": "Hispanic or Latino" } }, { "url": "detailed", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "2184-0", "display": "Dominican" } }, { "url": "detailed", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "2148-5", "display": "Mexican" } }, { "url": "text", "valueString": "Hispanic or Latino" } ], "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-ethnicity" }, { "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-birthsex", "valueCode": "F" }, { "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-genderIdentity", "valueCodeableConcept": { "coding": [ { "system": "http://terminology.hl7.org/CodeSystem/v3-NullFlavor", "code": "ASKU", "display": "asked but unknown" } ], "text": "asked but unknown" } } ], "identifier": [ { "use": "usual", "type": { "coding": [ { "system": "http://terminology.hl7.org/CodeSystem/v2-0203", "code": "MR", "display": "Medical Record Number" } ], "text": "Medical Record Number" }, "system": "http://hospital.smarthealthit.org", "value": "1032702" } ], "active": true, "name": [ { "use": "old", "family": "Shaw", "given": [ "Amy", "V." ], "period": { "start": "2016-12-06", "end": "2020-07-22" } }, { "family": "Baxter", "given": [ "Amy", "V." ], "suffix": [ "PharmD" ], "period": { "start": "2020-07-22" } } ], "telecom": [ { "system": "phone", "value": "555-555-5555", "use": "home" }, { "system": "email", "value": "amy.shaw@example.com" } ], "gender": "female", "birthDate": "1987-02-20", "address": [ { "use": "old", "line": [ "49 Meadow St" ], "city": "Norton", "state": "VT", "postalCode": "05907", "country": "US", "period": { "start": "2016-12-06", "end": "2020-07-22" } }, { "line": [ "183 Mountain View St" ], "city": "Norton", "state": "VT", "postalCode": "05907", "country": "US", "period": { "start": "2020-07-22" } } ]}
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2
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+
{ "resourceType": "Patient", "id": "example", "meta": { "extension": [ { "url": "http://hl7.org/fhir/StructureDefinition/instance-name", "valueString": "Patient Example" }, { "url": "http://hl7.org/fhir/StructureDefinition/instance-description", "valueMarkdown": "This is a patient example for the *US Core Patient Profile*." } ], "profile": [ "http://hl7.org/fhir/us/core/StructureDefinition/us-core-patient" ] }, "text": { "status": "generated", "div": "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Amy V. Baxter </b> female, DoB: 1987-02-20 ( Medical Record Number: 1032702 (USUAL))</p></div>" }, "extension": [ { "extension": [ { "url": "ombCategory", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "2106-3", "display": "White" } }, { "url": "ombCategory", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "1002-5", "display": "American Indian or Alaska Native" } }, { "url": "ombCategory", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "2028-9", "display": "Asian" } }, { "url": "detailed", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "1586-7", "display": "Shoshone" } }, { "url": "detailed", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "2036-2", "display": "Filipino" } }, { "url": "text", "valueString": "Mixed" } ], "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-race" }, { "extension": [ { "url": "ombCategory", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "2135-2", "display": "Hispanic or Latino" } }, { "url": "detailed", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "2184-0", "display": "Dominican" } }, { "url": "detailed", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "2148-5", "display": "Mexican" } }, { "url": "text", "valueString": "Hispanic or Latino" } ], "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-ethnicity" }, { "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-birthsex", "valueCode": "F" }, { "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-genderIdentity", "valueCodeableConcept": { "coding": [ { "system": "http://terminology.hl7.org/CodeSystem/v3-NullFlavor", "code": "ASKU", "display": "asked but unknown" } ], "text": "asked but unknown" } } ], "identifier": [ { "use": "usual", "type": { "coding": [ { "system": "http://terminology.hl7.org/CodeSystem/v2-0203", "code": "MR", "display": "Medical Record Number" } ], "text": "Medical Record Number" }, "system": "http://hospital.smarthealthit.org", "value": "1032702" } ], "active": true, "name": [ { "use": "old", "family": "Shaw", "given": [ "Amy", "V." ], "period": { "start": "2016-12-06", "end": "2020-07-22" } }, { "family": "Baxter", "given": [ "Amy", "V." ], "suffix": [ "PharmD" ], "period": { "start": "2020-07-22" } } ], "telecom": [ { "system": "phone", "value": "555-555-5555", "use": "home" }, { "system": "email", "value": "amy.shaw@example.com" } ], "gender": "female", "birthDate": "1987-02-20", "address": [ { "use": "old", "line": [ "49 Meadow St" ], "city": "Alstead", "state": "NH", "postalCode": "03602", "country": "US", "period": { "start": "2016-12-06", "end": "2020-07-22" } }, { "line": [ "183 Mountain View St" ], "city": "Alstead", "state": "NH", "postalCode": "03602", "country": "US", "period": { "start": "2020-07-22" } } ]}
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},
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{
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"name": "url",
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"valueUrl": "http://
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"valueUrl": "http://host.docker.internal/custom/uds_plus/examples/patient"
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"name": "url",
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"valueUrl": "http://
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"valueUrl": "http://host.docker.internal/custom/uds_plus/examples/condition"
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"valueUrl": "http://
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"valueUrl": "http://host.docker.internal/custom/uds_plus/examples/observation"
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"name": "url",
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"valueUrl": "http://
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"valueUrl": "http://host.docker.internal/custom/uds_plus/examples/encounter"
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"name": "expirationTime",
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require 'json'
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module UDSPlusTestKit
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class ReadDataUrlsTest < Inferno::Test
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id :uds_plus_read_data_urls_test
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title 'Receive UDS+ Data Urls Data'
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description %(
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Test takes from the user either: the http location of the "data urls" data
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or the raw JSON of the data itself.
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It attempts to GET the data stored at the given location if a link is provided,
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then validates whether a FHIR resource can be generated from the input data.
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)
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input :data_urls_data,
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title: 'Data Urls Data',
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optional: true,
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description: %q(
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User can input the data as:
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a URL link to the location of the data (ex: http://www.example.com/data_urls_data.json)
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OR a JSON string that composes the data. Leaving this blank will skip the test.
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)
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def data_scratch
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scratch[:data_resources] ||= {}
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end
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def data_to_test
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data_scratch['Parameters'] ||= []
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end
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run do
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omit_if !data_urls_data.present?, "No data provided; skipping test."
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# if the input is a url, else it is a json
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if data_urls_data.strip[0] != '{'
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assert_valid_http_uri(data_urls_data, "Location provided is not a valid http uri.")
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get data_urls_data
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assert_response_status(200)
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assert_valid_json(request.response_body, "Data received from request is not a valid JSON")
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data = request.response_body
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else
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assert_valid_json(data_urls_data, "JSON inputted was not in a valid format")
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data = data_urls_data
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end
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resource = FHIR::Json.from_json(data)
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assert resource.is_a?(FHIR::Model), "Could not generate a valid resource from the input provided"
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if resource.is_a?(FHIR::Model)
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data_to_test << resource
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end
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end
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end
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end
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@@ -0,0 +1,54 @@
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require 'json'
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module UDSPlusTestKit
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class ReadPatientReportingParametersTest < Inferno::Test
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id :uds_plus_read_patient_reporting_parameters_test
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title 'Receive UDS+ Patient Reporting Parameters Data'
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description %(
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Test takes from the user either: the http location of patient reporting parameters data
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or the raw JSON of the data itself.
|
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10
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It attempts to GET the data stored at the given location if a link is provided,
|
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then validates whether a FHIR resource can be generated from the input data.
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)
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input :patient_reporting_parameters_data,
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title: 'Patient Reporting Parameters Data',
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optional: true,
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description: %q(
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User can input the data as:
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a URL link to the location of the data (ex: http://www.example.com/patient_reporting_parameters_data.json)
|
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OR a JSON string that composes the data. Leaving this blank will skip the test.
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)
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def data_scratch
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scratch[:data_resources] ||= {}
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end
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def data_to_test
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data_scratch['Parameters'] ||= []
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end
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run do
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omit_if !patient_reporting_parameters_data.present?, "No data provided; skipping test."
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+
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# if the input is a url, else it is a json
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if patient_reporting_parameters_data.strip[0] != '{'
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assert_valid_http_uri(patient_reporting_parameters_data, "Location provided is not a valid http uri.")
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get patient_reporting_parameters_data
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assert_response_status(200)
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assert_valid_json(request.response_body, "Data received from request is not a valid JSON")
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data = request.response_body
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else
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assert_valid_json(patient_reporting_parameters_data, "JSON inputted was not in a valid format")
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data = patient_reporting_parameters_data
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end
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+
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resource = FHIR::Json.from_json(data)
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assert resource.is_a?(FHIR::Model), "Could not generate a valid resource from the input provided"
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48
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+
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+
if resource.is_a?(FHIR::Model)
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data_to_test << resource
|
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end
|
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end
|
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end
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end
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@@ -37,6 +37,10 @@ require_relative './read_adverse_event_test'
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require_relative '../validate_adverse_event_test'
|
|
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38
|
require_relative './read_clinical_result_test'
|
|
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39
|
require_relative '../validate_clinical_result_test'
|
|
40
|
+
require_relative './read_data_urls_test'
|
|
41
|
+
require_relative '../validate_data_urls_test'
|
|
42
|
+
require_relative './read_patient_reporting_parameters_test'
|
|
43
|
+
require_relative '../validate_patient_reporting_parameters_test'
|
|
40
44
|
|
|
41
45
|
module UDSPlusTestKit
|
|
42
46
|
class UDSPlusResourceTestGroup < Inferno::TestGroup
|
|
@@ -91,5 +95,9 @@ module UDSPlusTestKit
|
|
|
91
95
|
test from: :uds_plus_validate_medication_statement_test
|
|
92
96
|
test from: :uds_plus_read_service_request_test
|
|
93
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|
test from: :uds_plus_validate_service_request_test
|
|
98
|
+
test from: :uds_plus_read_data_urls_test
|
|
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|
+
test from: :uds_plus_validate_data_urls_test
|
|
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|
+
test from: :uds_plus_read_patient_reporting_parameters_test
|
|
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|
+
test from: :uds_plus_validate_patient_reporting_parameters_test
|
|
94
102
|
end
|
|
95
103
|
end
|
|
@@ -21,6 +21,8 @@ require_relative '../validate_location_test'
|
|
|
21
21
|
require_relative '../validate_allergy_intolerance_test'
|
|
22
22
|
require_relative '../validate_adverse_event_test'
|
|
23
23
|
require_relative '../validate_clinical_result_test'
|
|
24
|
+
require_relative '../validate_data_urls_test'
|
|
25
|
+
require_relative '../validate_patient_reporting_parameters_test'
|
|
24
26
|
|
|
25
27
|
module UDSPlusTestKit
|
|
26
28
|
class UDSPlusTestGroup < Inferno::TestGroup
|
|
@@ -56,6 +58,8 @@ module UDSPlusTestKit
|
|
|
56
58
|
test from: :uds_plus_validate_medication_request_test
|
|
57
59
|
test from: :uds_plus_validate_medication_statement_test
|
|
58
60
|
test from: :uds_plus_validate_service_request_test
|
|
61
|
+
test from: :uds_plus_validate_data_urls_test
|
|
62
|
+
test from: :uds_plus_validate_patient_reporting_parameters_test
|
|
59
63
|
test from: :uds_plus_invalid_type_test
|
|
60
64
|
end
|
|
61
65
|
end
|
|
@@ -26,6 +26,8 @@ require_relative '../validate_location_test'
|
|
|
26
26
|
require_relative '../validate_allergy_intolerance_test'
|
|
27
27
|
require_relative '../validate_adverse_event_test'
|
|
28
28
|
require_relative '../validate_clinical_result_test'
|
|
29
|
+
require_relative '../validate_data_urls_test'
|
|
30
|
+
require_relative '../validate_patient_reporting_parameters_test'
|
|
29
31
|
|
|
30
32
|
module UDSPlusTestKit
|
|
31
33
|
class UDSPlusPostGroup < Inferno::TestGroup
|
|
@@ -62,6 +64,8 @@ module UDSPlusTestKit
|
|
|
62
64
|
test from: :uds_plus_validate_medication_request_test
|
|
63
65
|
test from: :uds_plus_validate_medication_statement_test
|
|
64
66
|
test from: :uds_plus_validate_service_request_test
|
|
67
|
+
test from: :uds_plus_validate_data_urls_test
|
|
68
|
+
test from: :uds_plus_validate_patient_reporting_parameters_test
|
|
65
69
|
test from: :uds_plus_invalid_type_test
|
|
66
70
|
end
|
|
67
71
|
end
|
|
@@ -34,7 +34,7 @@ module UDSPlusTestKit
|
|
|
34
34
|
regardless of whether both tests were meant to run.)
|
|
35
35
|
|
|
36
36
|
data_to_test.each do |resource|
|
|
37
|
-
# All these assertions are to
|
|
37
|
+
# All these assertions are to differentiate Observation data between orientation types.
|
|
38
38
|
# A resource is skipped if it cannot be identified as an clinical result resource.
|
|
39
39
|
type_identifier = resource.to_hash
|
|
40
40
|
assert type_identifier['meta'].present?, identifier_fail_message
|
|
@@ -0,0 +1,65 @@
|
|
|
1
|
+
require 'json'
|
|
2
|
+
require_relative './version'
|
|
3
|
+
|
|
4
|
+
module UDSPlusTestKit
|
|
5
|
+
class ValidateDataUrlsTest < Inferno::Test
|
|
6
|
+
id :uds_plus_validate_data_urls_test
|
|
7
|
+
title 'Validate UDS+ Data Urls Data'
|
|
8
|
+
description %(
|
|
9
|
+
Test takes the Data Urls resources identified
|
|
10
|
+
by the import manifest, and validates whether they conform
|
|
11
|
+
to their UDS+ Structure Definitions.
|
|
12
|
+
)
|
|
13
|
+
|
|
14
|
+
def data_scratch
|
|
15
|
+
scratch[:data_resources] ||= {}
|
|
16
|
+
end
|
|
17
|
+
|
|
18
|
+
def data_to_test
|
|
19
|
+
data_scratch['Parameters'] ||= []
|
|
20
|
+
end
|
|
21
|
+
|
|
22
|
+
run do
|
|
23
|
+
omit_if data_to_test.empty?, "No data of this type was identified."
|
|
24
|
+
|
|
25
|
+
profile_definition = 'http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-deidentify-operation-data-urls-parameter'
|
|
26
|
+
profile_with_version = "#{profile_definition}|#{UDS_PLUS_VERSION}"
|
|
27
|
+
|
|
28
|
+
no_resource_of_this_type = true
|
|
29
|
+
identifier_fail_message = %(Resource.meta.profile should contain the HTTP location of the
|
|
30
|
+
resource's Structure Definition. Resource.meta.profile either does
|
|
31
|
+
not exist in this resource, or its contents do not point to a valid
|
|
32
|
+
location for type Parameters. **NOTE:**
|
|
33
|
+
If this error occurs, it can trigger a fail for all parameters-type tests,
|
|
34
|
+
regardless of whether both tests were meant to run.)
|
|
35
|
+
|
|
36
|
+
data_to_test.each do |resource|
|
|
37
|
+
# All these assertions are to differentiate Parameters data between orientation types.
|
|
38
|
+
# A resource is skipped if it cannot be identified as an data_urls resource.
|
|
39
|
+
type_identifier = resource.to_hash
|
|
40
|
+
assert type_identifier['meta'].present?, identifier_fail_message
|
|
41
|
+
|
|
42
|
+
type_identifier = type_identifier['meta']
|
|
43
|
+
assert type_identifier.is_a?(Hash), identifier_fail_message
|
|
44
|
+
assert type_identifier['profile'].present?, identifier_fail_message
|
|
45
|
+
|
|
46
|
+
type_identifier = type_identifier['profile']
|
|
47
|
+
assert type_identifier.is_a?(Array), identifier_fail_message
|
|
48
|
+
assert !type_identifier.empty?, identifier_fail_message
|
|
49
|
+
|
|
50
|
+
|
|
51
|
+
type_identifier = type_identifier.first
|
|
52
|
+
assert type_identifier.is_a?(String), identifier_fail_message
|
|
53
|
+
if !type_identifier.include?("-data-urls-")
|
|
54
|
+
next
|
|
55
|
+
end
|
|
56
|
+
|
|
57
|
+
no_resource_of_this_type = false
|
|
58
|
+
|
|
59
|
+
assert_valid_resource(resource: resource, profile_url: profile_with_version)
|
|
60
|
+
end
|
|
61
|
+
|
|
62
|
+
omit_if no_resource_of_this_type, "No data of this type was identified."
|
|
63
|
+
end
|
|
64
|
+
end
|
|
65
|
+
end
|
|
@@ -34,7 +34,7 @@ module UDSPlusTestKit
|
|
|
34
34
|
regardless of whether both tests were meant to run.)
|
|
35
35
|
|
|
36
36
|
data_to_test.each do |resource|
|
|
37
|
-
# All these assertions are to
|
|
37
|
+
# All these assertions are to differentiate Observation data between orientation types.
|
|
38
38
|
# A resource is skipped if it cannot be identified as an income resource.
|
|
39
39
|
type_identifier = resource.to_hash
|
|
40
40
|
assert type_identifier['meta'].present?, identifier_fail_message
|
|
@@ -34,7 +34,7 @@ module UDSPlusTestKit
|
|
|
34
34
|
regardless of whether both tests were meant to run.)
|
|
35
35
|
|
|
36
36
|
data_to_test.each do |resource|
|
|
37
|
-
# All these assertions are to
|
|
37
|
+
# All these assertions are to differentiate Observation data between Income Data and Sexual Orientation data.
|
|
38
38
|
# A resource is skipped if it is a sexual orientation resource and fails if it cannot be identified as an income resource.
|
|
39
39
|
type_identifier = resource.to_hash
|
|
40
40
|
assert type_identifier['meta'].present?, identifier_fail_message
|
|
@@ -0,0 +1,65 @@
|
|
|
1
|
+
require 'json'
|
|
2
|
+
require_relative './version'
|
|
3
|
+
|
|
4
|
+
module UDSPlusTestKit
|
|
5
|
+
class ValidatePatientReportingParametersTest < Inferno::Test
|
|
6
|
+
id :uds_plus_validate_patient_reporting_parameters_test
|
|
7
|
+
title 'Validate UDS+ Patient Reporting Parameters Data'
|
|
8
|
+
description %(
|
|
9
|
+
Test takes the Patient Reporting Parameters resources identified
|
|
10
|
+
by the import manifest, and validates whether they conform
|
|
11
|
+
to their UDS+ Structure Definitions.
|
|
12
|
+
)
|
|
13
|
+
|
|
14
|
+
def data_scratch
|
|
15
|
+
scratch[:data_resources] ||= {}
|
|
16
|
+
end
|
|
17
|
+
|
|
18
|
+
def data_to_test
|
|
19
|
+
data_scratch['Parameters'] ||= []
|
|
20
|
+
end
|
|
21
|
+
|
|
22
|
+
run do
|
|
23
|
+
omit_if data_to_test.empty?, "No data of this type was identified."
|
|
24
|
+
|
|
25
|
+
profile_definition = 'http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-patient-reporting-parameters'
|
|
26
|
+
profile_with_version = "#{profile_definition}|#{UDS_PLUS_VERSION}"
|
|
27
|
+
|
|
28
|
+
no_resource_of_this_type = true
|
|
29
|
+
identifier_fail_message = %(Resource.meta.profile should contain the HTTP location of the
|
|
30
|
+
resource's Structure Definition. Resource.meta.profile either does
|
|
31
|
+
not exist in this resource, or its contents do not point to a valid
|
|
32
|
+
location for type Parameters. **NOTE:**
|
|
33
|
+
If this error occurs, it can trigger a fail for all parameters-type tests,
|
|
34
|
+
regardless of whether both tests were meant to run.)
|
|
35
|
+
|
|
36
|
+
data_to_test.each do |resource|
|
|
37
|
+
# All these assertions are to differentiate Parameters data between orientation types.
|
|
38
|
+
# A resource is skipped if it cannot be identified as a patient reporting parameters resource.
|
|
39
|
+
type_identifier = resource.to_hash
|
|
40
|
+
assert type_identifier['meta'].present?, identifier_fail_message
|
|
41
|
+
|
|
42
|
+
type_identifier = type_identifier['meta']
|
|
43
|
+
assert type_identifier.is_a?(Hash), identifier_fail_message
|
|
44
|
+
assert type_identifier['profile'].present?, identifier_fail_message
|
|
45
|
+
|
|
46
|
+
type_identifier = type_identifier['profile']
|
|
47
|
+
assert type_identifier.is_a?(Array), identifier_fail_message
|
|
48
|
+
assert !type_identifier.empty?, identifier_fail_message
|
|
49
|
+
|
|
50
|
+
|
|
51
|
+
type_identifier = type_identifier.first
|
|
52
|
+
assert type_identifier.is_a?(String), identifier_fail_message
|
|
53
|
+
if !type_identifier.include?("patient-reporting")
|
|
54
|
+
next
|
|
55
|
+
end
|
|
56
|
+
|
|
57
|
+
no_resource_of_this_type = false
|
|
58
|
+
|
|
59
|
+
assert_valid_resource(resource: resource, profile_url: profile_with_version)
|
|
60
|
+
end
|
|
61
|
+
|
|
62
|
+
omit_if no_resource_of_this_type, "No data of this type was identified."
|
|
63
|
+
end
|
|
64
|
+
end
|
|
65
|
+
end
|
|
@@ -34,7 +34,7 @@ module UDSPlusTestKit
|
|
|
34
34
|
regardless of whether both tests were meant to run.)
|
|
35
35
|
|
|
36
36
|
data_to_test.each do |resource|
|
|
37
|
-
# All these assertions are to
|
|
37
|
+
# All these assertions are to differentiate Observation data between orientation types.
|
|
38
38
|
# A resource is skipped if it cannot be identified as a sexual orientation resource.
|
|
39
39
|
type_identifier = resource.to_hash
|
|
40
40
|
assert type_identifier['meta'].present?, identifier_fail_message
|
|
@@ -32,7 +32,7 @@ module UDSPlusTestKit
|
|
|
32
32
|
regardless of whether both tests were meant to run.)
|
|
33
33
|
|
|
34
34
|
data_to_test.each do |resource|
|
|
35
|
-
# All these assertions are to
|
|
35
|
+
# All these assertions are to differentiate Observation data between orientation types.
|
|
36
36
|
# A resource is skipped if it is one of the observation types with their own tests.
|
|
37
37
|
type_identifier = resource.to_hash
|
|
38
38
|
assert type_identifier['meta'].present?, identifier_fail_message
|
metadata
CHANGED
|
@@ -1,14 +1,14 @@
|
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
|
2
2
|
name: uds_plus_test_kit
|
|
3
3
|
version: !ruby/object:Gem::Version
|
|
4
|
-
version: 1.0.
|
|
4
|
+
version: 1.0.5
|
|
5
5
|
platform: ruby
|
|
6
6
|
authors:
|
|
7
7
|
- Leap Orbit
|
|
8
8
|
autorequire:
|
|
9
9
|
bindir: bin
|
|
10
10
|
cert_chain: []
|
|
11
|
-
date: 2023-09-
|
|
11
|
+
date: 2023-09-14 00:00:00.000000000 Z
|
|
12
12
|
dependencies:
|
|
13
13
|
- !ruby/object:Gem::Dependency
|
|
14
14
|
name: inferno_core
|
|
@@ -101,6 +101,7 @@ files:
|
|
|
101
101
|
- lib/uds_plus_test_kit/input_resource_tests/read_allergy_intolerance_test.rb
|
|
102
102
|
- lib/uds_plus_test_kit/input_resource_tests/read_clinical_result_test.rb
|
|
103
103
|
- lib/uds_plus_test_kit/input_resource_tests/read_coverage_test.rb
|
|
104
|
+
- lib/uds_plus_test_kit/input_resource_tests/read_data_urls_test.rb
|
|
104
105
|
- lib/uds_plus_test_kit/input_resource_tests/read_diagnosis_test.rb
|
|
105
106
|
- lib/uds_plus_test_kit/input_resource_tests/read_encounter_test.rb
|
|
106
107
|
- lib/uds_plus_test_kit/input_resource_tests/read_immunization_test.rb
|
|
@@ -110,6 +111,7 @@ files:
|
|
|
110
111
|
- lib/uds_plus_test_kit/input_resource_tests/read_manifest_ind_test.rb
|
|
111
112
|
- lib/uds_plus_test_kit/input_resource_tests/read_med_request_test.rb
|
|
112
113
|
- lib/uds_plus_test_kit/input_resource_tests/read_med_statement_test.rb
|
|
114
|
+
- lib/uds_plus_test_kit/input_resource_tests/read_patient_reporting_parameters_test.rb
|
|
113
115
|
- lib/uds_plus_test_kit/input_resource_tests/read_patient_test.rb
|
|
114
116
|
- lib/uds_plus_test_kit/input_resource_tests/read_procedure_test.rb
|
|
115
117
|
- lib/uds_plus_test_kit/input_resource_tests/read_related_person_test.rb
|
|
@@ -130,6 +132,7 @@ files:
|
|
|
130
132
|
- lib/uds_plus_test_kit/validate_allergy_intolerance_test.rb
|
|
131
133
|
- lib/uds_plus_test_kit/validate_clinical_result_test.rb
|
|
132
134
|
- lib/uds_plus_test_kit/validate_coverage_test.rb
|
|
135
|
+
- lib/uds_plus_test_kit/validate_data_urls_test.rb
|
|
133
136
|
- lib/uds_plus_test_kit/validate_diagnosis_test.rb
|
|
134
137
|
- lib/uds_plus_test_kit/validate_encounter_test.rb
|
|
135
138
|
- lib/uds_plus_test_kit/validate_immunization_test.rb
|
|
@@ -138,6 +141,7 @@ files:
|
|
|
138
141
|
- lib/uds_plus_test_kit/validate_location_test.rb
|
|
139
142
|
- lib/uds_plus_test_kit/validate_med_request_test.rb
|
|
140
143
|
- lib/uds_plus_test_kit/validate_med_statement_test.rb
|
|
144
|
+
- lib/uds_plus_test_kit/validate_patient_reporting_parameters_test.rb
|
|
141
145
|
- lib/uds_plus_test_kit/validate_patient_test.rb
|
|
142
146
|
- lib/uds_plus_test_kit/validate_procedure_test.rb
|
|
143
147
|
- lib/uds_plus_test_kit/validate_related_person_test.rb
|