uds_plus_test_kit 1.0.3 → 1.0.5
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- checksums.yaml +4 -4
- data/lib/uds_plus_test_kit/examples/invalid_encounter.ndjson +1 -1
- data/lib/uds_plus_test_kit/examples/invalid_patient.ndjson +2 -2
- data/lib/uds_plus_test_kit/examples/manifest.json +8 -4
- data/lib/uds_plus_test_kit/examples/observation.ndjson +1 -1
- data/lib/uds_plus_test_kit/examples/patient.ndjson +2 -2
- data/lib/uds_plus_test_kit/input_resource_tests/read_adverse_event_test.rb +54 -0
- data/lib/uds_plus_test_kit/input_resource_tests/read_allergy_intolerance_test.rb +54 -0
- data/lib/uds_plus_test_kit/input_resource_tests/read_clinical_result_test.rb +54 -0
- data/lib/uds_plus_test_kit/input_resource_tests/read_data_urls_test.rb +54 -0
- data/lib/uds_plus_test_kit/input_resource_tests/read_location_test.rb +54 -0
- data/lib/uds_plus_test_kit/input_resource_tests/read_patient_reporting_parameters_test.rb +54 -0
- data/lib/uds_plus_test_kit/input_resource_tests/resource_group.rb +24 -0
- data/lib/uds_plus_test_kit/manifest_tests/invalid_type_test.rb +3 -1
- data/lib/uds_plus_test_kit/manifest_tests/uds_plus_test_group.rb +12 -0
- data/lib/uds_plus_test_kit/post_tests/post_group.rb +12 -0
- data/lib/uds_plus_test_kit/uds_plus_test_suite.rb +2 -2
- data/lib/uds_plus_test_kit/validate_adverse_event_test.rb +33 -0
- data/lib/uds_plus_test_kit/validate_allergy_intolerance_test.rb +33 -0
- data/lib/uds_plus_test_kit/validate_clinical_result_test.rb +65 -0
- data/lib/uds_plus_test_kit/validate_data_urls_test.rb +65 -0
- data/lib/uds_plus_test_kit/validate_income_test.rb +1 -1
- data/lib/uds_plus_test_kit/validate_lab_test.rb +1 -1
- data/lib/uds_plus_test_kit/validate_location_test.rb +33 -0
- data/lib/uds_plus_test_kit/validate_patient_reporting_parameters_test.rb +65 -0
- data/lib/uds_plus_test_kit/validate_sexual_orientation_test.rb +1 -1
- data/lib/uds_plus_test_kit/validate_special_observation_test.rb +9 -2
- data/lib/uds_plus_test_kit/version.rb +2 -2
- metadata +14 -2
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
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---
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SHA256:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 719de47995674c07898efc624bfcacb19f5180ee89f05ecfb8cc6d78e6b907f4
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data.tar.gz: 89313bf688921b5bf9242335631eda25ce86055ae4e1b46e529e92b2120f1273
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 38ea29b468539317c810ea9f7592b41b3b4680ded358896a047a10be7aa1aa4513245d1c736b9bcc9c1959173e3f5d5424c490d6e5da9c04b34072933242f641
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7
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data.tar.gz: 8ef032e82432b39b07f1a4758d2843b71139bde66c1c241e16fc3d91eccb394dd9620ead6ab88e564dde364bd233366dd6a2e1fd6339d01c1d8e1ff858504e89
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@@ -1 +1 @@
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{ "resourceType": "Encounter", "id": "example", "meta": { "extension": [ { "url": "http://hl7.org/fhir/StructureDefinition/instance-name", "valueString": "Encounter Example" }, { "url": "http://hl7.org/fhir/StructureDefinition/instance-description", "valueMarkdown": "This is an encounter example for the *US Core Encounter Profile*." } ], "lastUpdated": "2017-05-26T11:56:57.250-04:00", "profile": [ "http://hl7.org/fhir/us/core/StructureDefinition/us-core-encounter" ] }, "text": { "status": "extensions", "div": "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource \"example-1\" Updated \"2017-05-26 11:56:57-0400\" </p><p style=\"margin-bottom: 0px\">Profile:US Core Encounter Profile</p></div><p><b>status</b>: finished</p><p><b>class</b>: ambulatory (Details: http://terminology.hl7.org/CodeSystem/v3-ActCode code AMB = 'ambulatory', stated as 'ambulatory')</p><p><b>type</b>: Office Visit <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/3.1.0/CodeSystem-CPT.html\">Current Procedural Terminology (CPT)</a>#99201)</span></p><p><b>subject</b>: <a href=\"Patient-example.html\">Patient/example</a> \" SHAW\"</p><p><b>period</b>: 2015-11-01 05:00:14-0500 --> 2015-11-01 06:00:14-0500</p></div>" }, "status": "finished", "class": { "system": "http://terminology.hl7.org/CodeSystem/v3-ActCode", "code": "AMB", "display": "ambulatory" }, "type": [ { "coding": [ { "system": "http://www.ama-assn.org/go/cpt", "code": "99201" } ], "text": "Office Visit" } ], "subject": { "reference": "Patient/example", "display" : "Amy" }, "period": { "start": "2015-11-01T17:00:14-05:00", "end": "2015-11-01T18:00:14-05:00" }, "hospitalization" : { "dischargeDisposition" : { "coding" : [ { "system" : "http://www.nubc.org/patient-discharge", "code" : "01", "display" : "Discharged to Home" } ], "text" : "Amy was dischaged to home" } }, "location" : [ { "location" : { "reference" : "Location/hospital", "display" : "Holy Family Hospital" } } ] }
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@@ -1,2 +1,2 @@
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{
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{
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{ "resourceType": "Patient", "id": "smallpop-example", "meta": { "extension": [ { "url": "http://hl7.org/fhir/StructureDefinition/instance-name", "valueString": "Patient Example" }, { "url": "http://hl7.org/fhir/StructureDefinition/instance-description", "valueMarkdown": "This is a patient example for the *US Core Patient Profile*." } ], "profile": [ "http://hl7.org/fhir/us/core/StructureDefinition/us-core-patient" ] }, "text": { "status": "generated", "div": "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Amy V. Baxter </b> female, DoB: 1987-02-20 ( Medical Record Number: 1032702 (USUAL))</p></div>" }, "extension": [ { "extension": [ { "url": "ombCategory", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "2106-3", "display": "White" } }, { "url": "ombCategory", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "1002-5", "display": "American Indian or Alaska Native" } }, { "url": "ombCategory", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "2028-9", "display": "Asian" } }, { "url": "detailed", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "1586-7", "display": "Shoshone" } }, { "url": "detailed", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "2036-2", "display": "Filipino" } }, { "url": "text", "valueString": "Mixed" } ], "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-race" }, { "extension": [ { "url": "ombCategory", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "2135-2", "display": "Hispanic or Latino" } }, { "url": "detailed", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "2184-0", "display": "Dominican" } }, { "url": "detailed", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "2148-5", "display": "Mexican" } }, { "url": "text", "valueString": "Hispanic or Latino" } ], "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-ethnicity" }, { "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-birthsex", "valueCode": "F" }, { "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-genderIdentity", "valueCodeableConcept": { "coding": [ { "system": "http://terminology.hl7.org/CodeSystem/v3-NullFlavor", "code": "ASKU", "display": "asked but unknown" } ], "text": "asked but unknown" } } ], "identifier": [ { "use": "usual", "type": { "coding": [ { "system": "http://terminology.hl7.org/CodeSystem/v2-0203", "code": "MR", "display": "Medical Record Number" } ], "text": "Medical Record Number" }, "system": "http://hospital.smarthealthit.org", "value": "1032702" } ], "active": true, "name": [ { "use": "old", "family": "Shaw", "given": [ "Amy", "V." ], "period": { "start": "2016-12-06", "end": "2020-07-22" } }, { "family": "Baxter", "given": [ "Amy", "V." ], "suffix": [ "PharmD" ], "period": { "start": "2020-07-22" } } ], "telecom": [ { "system": "phone", "value": "555-555-5555", "use": "home" }, { "system": "email", "value": "amy.shaw@example.com" } ], "gender": "female", "birthDate": "1987-02-20", "address": [ { "use": "old", "line": [ "49 Meadow St" ], "city": "Norton", "state": "VT", "postalCode": "05907", "country": "US", "period": { "start": "2016-12-06", "end": "2020-07-22" } }, { "line": [ "183 Mountain View St" ], "city": "Norton", "state": "VT", "postalCode": "05907", "country": "US", "period": { "start": "2020-07-22" } } ]}
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{ "resourceType": "Patient", "id": "example", "meta": { "extension": [ { "url": "http://hl7.org/fhir/StructureDefinition/instance-name", "valueString": "Patient Example" }, { "url": "http://hl7.org/fhir/StructureDefinition/instance-description", "valueMarkdown": "This is a patient example for the *US Core Patient Profile*." } ], "profile": [ "http://hl7.org/fhir/us/core/StructureDefinition/us-core-patient" ] }, "text": { "status": "generated", "div": "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Amy V. Baxter </b> female, DoB: 1987-02-20 ( Medical Record Number: 1032702 (USUAL))</p></div>" }, "extension": [ { "extension": [ { "url": "ombCategory", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "2106-3", "display": "White" } }, { "url": "ombCategory", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "1002-5", "display": "American Indian or Alaska Native" } }, { "url": "ombCategory", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "2028-9", "display": "Asian" } }, { "url": "detailed", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "1586-7", "display": "Shoshone" } }, { "url": "detailed", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "2036-2", "display": "Filipino" } }, { "url": "text", "valueString": "Mixed" } ], "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-race" }, { "extension": [ { "url": "ombCategory", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "2135-2", "display": "Hispanic or Latino" } }, { "url": "detailed", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "2184-0", "display": "Dominican" } }, { "url": "detailed", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "2148-5", "display": "Mexican" } }, { "url": "text", "valueString": "Hispanic or Latino" } ], "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-ethnicity" }, { "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-birthsex", "valueCode": "F" }, { "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-genderIdentity", "valueCodeableConcept": { "coding": [ { "system": "http://terminology.hl7.org/CodeSystem/v3-NullFlavor", "code": "ASKU", "display": "asked but unknown" } ], "text": "asked but unknown" } } ], "identifier": [ { "use": "usual", "type": { "coding": [ { "system": "http://terminology.hl7.org/CodeSystem/v2-0203", "code": "MR", "display": "Medical Record Number" } ], "text": "Medical Record Number" }, "system": "http://hospital.smarthealthit.org", "value": "1032702" } ], "active": true, "name": [ { "use": "old", "family": "Shaw", "given": [ "Amy", "V." ], "period": { "start": "2016-12-06", "end": "2020-07-22" } }, { "family": "Baxter", "given": [ "Amy", "V." ], "suffix": [ "PharmD" ], "period": { "start": "2020-07-22" } } ], "telecom": [ { "system": "phone", "value": "555-555-5555", "use": "home" }, { "system": "email", "value": "amy.shaw@example.com" } ], "gender": "female", "birthDate": "1987-02-20", "address": [ { "use": "old", "line": [ "49 Meadow St" ], "city": "Alstead", "state": "NH", "postalCode": "03602", "country": "US", "period": { "start": "2016-12-06", "end": "2020-07-22" } }, { "line": [ "183 Mountain View St" ], "city": "Alstead", "state": "NH", "postalCode": "03602", "country": "US", "period": { "start": "2020-07-22" } } ]}
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@@ -67,6 +67,10 @@
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"system": "phone",
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"value": "234-234-5648"
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"name" : "hcPrenatalCareByReferralOnly",
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"valueBoolean" : true
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"name": "url",
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"valueUrl": "http://
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"valueUrl": "http://host.docker.internal/custom/uds_plus/examples/patient"
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"name": "url",
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"valueUrl": "http://
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"valueUrl": "http://host.docker.internal/custom/uds_plus/examples/condition"
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"valueUrl": "http://
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"valueUrl": "http://host.docker.internal/custom/uds_plus/examples/observation"
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"valueUrl": "http://
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"valueUrl": "http://host.docker.internal/custom/uds_plus/examples/encounter"
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{ "resourceType": "Observation", "id": "de-identified-example", "meta": { "profile": [ "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-lab-observation" ] }, "status": "final", "category": [ { "coding": [ { "system" : "http://terminology.hl7.org/CodeSystem/observation-category", "code" : "laboratory", "display" : "Laboratory" } ] } ], "code": { "coding": [ { "system" : "http://loinc.org", "code" : "718-7", "display" : "Hemoglobin [Mass/volume] in Blood" } ] }, "subject": { "reference": "Patient/de-identified-example" }, "encounter": { "reference": "Encounter/de-identified-example" }, "effectiveDateTime" : "2005", "issued": "2005-04-03T15:30:10+01:00", "performer": [ { "reference": "Practitioner/example" } ], "valueQuantity" : { "value" : 17, "unit" : "g/dL", "system" : "http://unitsofmeasure.org" }, "bodySite": { "coding": [ { "system": "http://snomed.info/sct", "code": "368208006", "display": "Left upper arm structure" } ] }}
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{ "resourceType": "Observation", "id": "de-identified-income-example", "meta": { "profile": [ "http://hl7.org/fhir/us/uds-plus/StructureDefinition/de-identified-uds-plus-income-observation" ] }, "status": "final", "code": { "coding": [ { "system": "http://loinc.org", "code": "63058-2" } ] }, "subject": { "reference": "Patient/de-identified-example" }, "effectiveDateTime": "2016-03-28", "valueRange": { "low": { "value": 101 }, "high": { "value": 150 } }}
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{ "resourceType": "Observation", "id": "de-identified-sexual-orientation-example", "meta": { "profile": [ "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-sexual-orientation-observation" ] }, "status": "final", "code": { "coding": [ { "system": "http://loinc.org", "code": "76690-7" } ] }, "subject": { "reference": "Patient/example" }, "effectiveDateTime": "2007", "valueCodeableConcept": { "coding": [ { "system": "http://
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{ "resourceType": "Observation", "id": "de-identified-sexual-orientation-example", "meta": { "profile": [ "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-sexual-orientation-observation" ] }, "status": "final", "code": { "coding": [ { "system": "http://loinc.org", "code": "76690-7" } ] }, "subject": { "reference": "Patient/example" }, "effectiveDateTime": "2007", "valueCodeableConcept": { "coding": [ { "system": "http://terminology.hl7.org/CodeSystem/v3-NullFlavor", "code": "NASK", "display": "not asked" } ] }}
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{ "resourceType": "Patient", "id": "de-identified-example", "meta": { "extension": [ { "url": "http://hl7.org/fhir/StructureDefinition/instance-name", "valueString": "De-identified Patient Example" }, { "url": "http://hl7.org/fhir/StructureDefinition/instance-description", "valueMarkdown": "This is a patient example for the *UDS+ Patient Profile*." } ], "profile": [ "http://hl7.org/fhir/us/uds-plus/StructureDefinition/de-identified-uds-plus-patient" ] }, "extension": [ { "extension": [ { "url": "ombCategory", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "2106-3", "display": "White" } }, { "url": "text", "valueString": "White" } ], "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-race" }, { "extension": [ { "url": "ombCategory", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "2135-2", "display": "Hispanic or Latino" } }, { "url": "text", "valueString": "Hispanic or Latino" } ], "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-ethnicity" }, { "url": "http://hl7.org/fhir/us/
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{ "resourceType": "Patient", "id": "de-identified-
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{ "resourceType": "Patient", "id": "de-identified-smallpop-example", "meta": { "extension": [ { "url": "http://hl7.org/fhir/StructureDefinition/instance-name", "valueString": "De-identified Patient Example" }, { "url": "http://hl7.org/fhir/StructureDefinition/instance-description", "valueMarkdown": "This is a patient example for the *UDS+ Patient Profile*." } ], "profile": [ "http://hl7.org/fhir/us/uds-plus/StructureDefinition/de-identified-uds-plus-patient" ] }, "extension": [ { "extension": [ { "url": "ombCategory", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "2106-3", "display": "White" } }, { "url" : "detailed", "valueCoding" : { "system" : "urn:oid:2.16.840.1.113883.6.238", "code" : "2108-9", "display" : "European" } }, { "url": "text", "valueString": "White" } ], "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-race" }, { "extension": [ { "url": "ombCategory", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "2135-2", "display": "Hispanic or Latino" } }, { "url" : "detailed", "valueCoding" : { "system" : "urn:oid:2.16.840.1.113883.6.238", "code" : "2184-0", "display" : "Dominican" } }, { "url": "text", "valueString": "Hispanic or Latino" } ], "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-ethnicity" }, { "url": "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-birthsex-extension", "valueCode": "F" }, { "url": "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-age-extension", "valueQuantity": { "value" : 36, "unit" : "yr", "system" : "http://unitsofmeasure.org", "code" : "a" } }, { "url": "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-gender-identity-extension", "valueCodeableConcept": { "coding": [ { "system": "http://terminology.hl7.org/CodeSystem/v3-NullFlavor", "code": "NASK", "display": "Not Asked" } ], "text": "Not Asked" } } ], "active": true, "gender": "female", "address": [ { "postalCode": "00000", "_postalCode": { "extension" : [ { "url" : "http://hl7.org/fhir/StructureDefinition/data-absent-reason", "valueCode" : "masked" }] } } ]}
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{ "resourceType": "Patient", "id": "de-identified-example", "meta": { "extension": [ { "url": "http://hl7.org/fhir/StructureDefinition/instance-name", "valueString": "De-identified Patient Example" }, { "url": "http://hl7.org/fhir/StructureDefinition/instance-description", "valueMarkdown": "This is a patient example for the *UDS+ Patient Profile*." } ], "profile": [ "http://hl7.org/fhir/us/uds-plus/StructureDefinition/de-identified-uds-plus-patient" ] }, "extension": [ { "extension": [ { "url": "ombCategory", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "2106-3", "display": "White" } }, { "url" : "detailed", "valueCoding" : { "system" : "urn:oid:2.16.840.1.113883.6.238", "code" : "2108-9", "display" : "European" } }, { "url": "text", "valueString": "White" } ], "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-race" }, { "extension": [ { "url": "ombCategory", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "2135-2", "display": "Hispanic or Latino" } }, { "url" : "detailed", "valueCoding" : { "system" : "urn:oid:2.16.840.1.113883.6.238", "code" : "2184-0", "display" : "Dominican" } }, { "url": "text", "valueString": "Hispanic or Latino" } ], "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-ethnicity" }, { "url": "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-birthsex-extension", "valueCode": "F" }, { "url": "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-age-extension", "valueQuantity": { "value" : 36, "unit" : "yr", "system" : "http://unitsofmeasure.org", "code" : "a" } }, { "url": "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-gender-identity-extension", "valueCodeableConcept": { "coding": [ { "system": "http://terminology.hl7.org/CodeSystem/v3-NullFlavor", "code": "ASKU", "display": "asked but unknown" } ], "text": "asked but unknown" } }, { "url": "http://hl7.org/fhir/us/uds-plus/StructureDefinition/udsplus-agriculture-worker-status", "valueCode": "migratory" }, { "url": "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-housing-status-extension", "valueCode": "permanent-supportive-housing" }, { "url": "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-veteran-status-extension", "valueBoolean": false } ], "active": true, "gender": "female", "address": [ { "postalCode": "03600" } ]}
|
@@ -0,0 +1,54 @@
|
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require 'json'
|
2
|
+
|
3
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module UDSPlusTestKit
|
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|
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class ReadAdverseEventTest < Inferno::Test
|
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id :uds_plus_read_adverse_event_test
|
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title 'Receive UDS+ Adverse Event Data'
|
7
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description %(
|
8
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Test takes from the user either: the http location of adverse event data
|
9
|
+
or the raw JSON of the data itself.
|
10
|
+
It attempts to GET the data stored at the given location if a link is provided,
|
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+
then validates whether a FHIR resource can be generated from the input data.
|
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)
|
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+
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input :adverse_event_data,
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title: 'Adverse Event Data',
|
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optional: true,
|
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description: %q(
|
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User can input the data as:
|
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|
+
a URL link to the location of the data (ex: http://www.example.com/adverse_event_data.json)
|
20
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+
OR a JSON string that composes the data. Leaving this blank will skip the test.
|
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)
|
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+
|
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|
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def data_scratch
|
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scratch[:data_resources] ||= {}
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end
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+
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def data_to_test
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data_scratch['AdverseEvent'] ||= []
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end
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+
|
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run do
|
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omit_if !adverse_event_data.present?, "No data provided; skipping test."
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+
|
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|
+
# if the input is a url, else it is a json
|
35
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if adverse_event_data.strip[0] != '{'
|
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assert_valid_http_uri(adverse_event_data, "Adverse Event provided is not a valid http uri.")
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get adverse_event_data
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assert_response_status(200)
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assert_valid_json(request.response_body, "Data received from request is not a valid JSON")
|
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data = request.response_body
|
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else
|
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assert_valid_json(adverse_event_data, "JSON inputted was not in a valid format")
|
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data = adverse_event_data
|
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end
|
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+
|
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resource = FHIR::Json.from_json(data)
|
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assert resource.is_a?(FHIR::Model), "Could not generate a valid resource from the input provided"
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|
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if resource.is_a?(FHIR::Model)
|
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data_to_test << resource
|
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end
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end
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end
|
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end
|
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require 'json'
|
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|
3
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module UDSPlusTestKit
|
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|
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class ReadAllergyIntoleranceTest < Inferno::Test
|
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|
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id :uds_plus_read_allergy_intolerance_test
|
6
|
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title 'Receive UDS+ Allergy Intolerance Data'
|
7
|
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description %(
|
8
|
+
Test takes from the user either: the http location of allergy intolerance data
|
9
|
+
or the raw JSON of the data itself.
|
10
|
+
It attempts to GET the data stored at the given location if a link is provided,
|
11
|
+
then validates whether a FHIR resource can be generated from the input data.
|
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|
+
)
|
13
|
+
|
14
|
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input :allergy_intolerance_data,
|
15
|
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title: 'Allergy Intolerance Data',
|
16
|
+
optional: true,
|
17
|
+
description: %q(
|
18
|
+
User can input the data as:
|
19
|
+
a URL link to the location of the data (ex: http://www.example.com/allergy_intolerance_data.json)
|
20
|
+
OR a JSON string that composes the data. Leaving this blank will skip the test.
|
21
|
+
)
|
22
|
+
|
23
|
+
def data_scratch
|
24
|
+
scratch[:data_resources] ||= {}
|
25
|
+
end
|
26
|
+
|
27
|
+
def data_to_test
|
28
|
+
data_scratch['AllergyIntolerance'] ||= []
|
29
|
+
end
|
30
|
+
|
31
|
+
run do
|
32
|
+
omit_if !allergy_intolerance_data.present?, "No data provided; skipping test."
|
33
|
+
|
34
|
+
# if the input is a url, else it is a json
|
35
|
+
if allergy_intolerance_data.strip[0] != '{'
|
36
|
+
assert_valid_http_uri(allergy_intolerance_data, "Allergy Intolerance provided is not a valid http uri.")
|
37
|
+
get allergy_intolerance_data
|
38
|
+
assert_response_status(200)
|
39
|
+
assert_valid_json(request.response_body, "Data received from request is not a valid JSON")
|
40
|
+
data = request.response_body
|
41
|
+
else
|
42
|
+
assert_valid_json(allergy_intolerance_data, "JSON inputted was not in a valid format")
|
43
|
+
data = allergy_intolerance_data
|
44
|
+
end
|
45
|
+
|
46
|
+
resource = FHIR::Json.from_json(data)
|
47
|
+
assert resource.is_a?(FHIR::Model), "Could not generate a valid resource from the input provided"
|
48
|
+
|
49
|
+
if resource.is_a?(FHIR::Model)
|
50
|
+
data_to_test << resource
|
51
|
+
end
|
52
|
+
end
|
53
|
+
end
|
54
|
+
end
|
@@ -0,0 +1,54 @@
|
|
1
|
+
require 'json'
|
2
|
+
|
3
|
+
module UDSPlusTestKit
|
4
|
+
class ReadClinicalResultTest < Inferno::Test
|
5
|
+
id :uds_plus_read_clinical_result_test
|
6
|
+
title 'Receive UDS+ Clinical Result Data'
|
7
|
+
description %(
|
8
|
+
Test takes from the user either: the http location of clinical result data
|
9
|
+
or the raw JSON of the data itself.
|
10
|
+
It attempts to GET the data stored at the given location if a link is provided,
|
11
|
+
then validates whether a FHIR resource can be generated from the input data.
|
12
|
+
)
|
13
|
+
|
14
|
+
input :clinical_result_data,
|
15
|
+
title: 'Clinical Result Data',
|
16
|
+
optional: true,
|
17
|
+
description: %q(
|
18
|
+
User can input the data as:
|
19
|
+
a URL link to the location of the data (ex: http://www.example.com/clinical_result_data.json)
|
20
|
+
OR a JSON string that composes the data. Leaving this blank will skip the test.
|
21
|
+
)
|
22
|
+
|
23
|
+
def data_scratch
|
24
|
+
scratch[:data_resources] ||= {}
|
25
|
+
end
|
26
|
+
|
27
|
+
def data_to_test
|
28
|
+
data_scratch['Observation'] ||= []
|
29
|
+
end
|
30
|
+
|
31
|
+
run do
|
32
|
+
omit_if !clinical_result_data.present?, "No data provided; skipping test."
|
33
|
+
|
34
|
+
# if the input is a url, else it is a json
|
35
|
+
if clinical_result_data.strip[0] != '{'
|
36
|
+
assert_valid_http_uri(clinical_result_data, "Location provided is not a valid http uri.")
|
37
|
+
get clinical_result_data
|
38
|
+
assert_response_status(200)
|
39
|
+
assert_valid_json(request.response_body, "Data received from request is not a valid JSON")
|
40
|
+
data = request.response_body
|
41
|
+
else
|
42
|
+
assert_valid_json(clinical_result_data, "JSON inputted was not in a valid format")
|
43
|
+
data = clinical_result_data
|
44
|
+
end
|
45
|
+
|
46
|
+
resource = FHIR::Json.from_json(data)
|
47
|
+
assert resource.is_a?(FHIR::Model), "Could not generate a valid resource from the input provided"
|
48
|
+
|
49
|
+
if resource.is_a?(FHIR::Model)
|
50
|
+
data_to_test << resource
|
51
|
+
end
|
52
|
+
end
|
53
|
+
end
|
54
|
+
end
|
@@ -0,0 +1,54 @@
|
|
1
|
+
require 'json'
|
2
|
+
|
3
|
+
module UDSPlusTestKit
|
4
|
+
class ReadDataUrlsTest < Inferno::Test
|
5
|
+
id :uds_plus_read_data_urls_test
|
6
|
+
title 'Receive UDS+ Data Urls Data'
|
7
|
+
description %(
|
8
|
+
Test takes from the user either: the http location of the "data urls" data
|
9
|
+
or the raw JSON of the data itself.
|
10
|
+
It attempts to GET the data stored at the given location if a link is provided,
|
11
|
+
then validates whether a FHIR resource can be generated from the input data.
|
12
|
+
)
|
13
|
+
|
14
|
+
input :data_urls_data,
|
15
|
+
title: 'Data Urls Data',
|
16
|
+
optional: true,
|
17
|
+
description: %q(
|
18
|
+
User can input the data as:
|
19
|
+
a URL link to the location of the data (ex: http://www.example.com/data_urls_data.json)
|
20
|
+
OR a JSON string that composes the data. Leaving this blank will skip the test.
|
21
|
+
)
|
22
|
+
|
23
|
+
def data_scratch
|
24
|
+
scratch[:data_resources] ||= {}
|
25
|
+
end
|
26
|
+
|
27
|
+
def data_to_test
|
28
|
+
data_scratch['Parameters'] ||= []
|
29
|
+
end
|
30
|
+
|
31
|
+
run do
|
32
|
+
omit_if !data_urls_data.present?, "No data provided; skipping test."
|
33
|
+
|
34
|
+
# if the input is a url, else it is a json
|
35
|
+
if data_urls_data.strip[0] != '{'
|
36
|
+
assert_valid_http_uri(data_urls_data, "Location provided is not a valid http uri.")
|
37
|
+
get data_urls_data
|
38
|
+
assert_response_status(200)
|
39
|
+
assert_valid_json(request.response_body, "Data received from request is not a valid JSON")
|
40
|
+
data = request.response_body
|
41
|
+
else
|
42
|
+
assert_valid_json(data_urls_data, "JSON inputted was not in a valid format")
|
43
|
+
data = data_urls_data
|
44
|
+
end
|
45
|
+
|
46
|
+
resource = FHIR::Json.from_json(data)
|
47
|
+
assert resource.is_a?(FHIR::Model), "Could not generate a valid resource from the input provided"
|
48
|
+
|
49
|
+
if resource.is_a?(FHIR::Model)
|
50
|
+
data_to_test << resource
|
51
|
+
end
|
52
|
+
end
|
53
|
+
end
|
54
|
+
end
|
@@ -0,0 +1,54 @@
|
|
1
|
+
require 'json'
|
2
|
+
|
3
|
+
module UDSPlusTestKit
|
4
|
+
class ReadLocationTest < Inferno::Test
|
5
|
+
id :uds_plus_read_location_test
|
6
|
+
title 'Receive UDS+ Location Data'
|
7
|
+
description %(
|
8
|
+
Test takes from the user either: the http location of location data
|
9
|
+
or the raw JSON of the data itself.
|
10
|
+
It attempts to GET the data stored at the given location if a link is provided,
|
11
|
+
then validates whether a FHIR resource can be generated from the input data.
|
12
|
+
)
|
13
|
+
|
14
|
+
input :location_data,
|
15
|
+
title: 'Location Data',
|
16
|
+
optional: true,
|
17
|
+
description: %q(
|
18
|
+
User can input the data as:
|
19
|
+
a URL link to the location of the data (ex: http://www.example.com/location_data.json)
|
20
|
+
OR a JSON string that composes the data. Leaving this blank will skip the test.
|
21
|
+
)
|
22
|
+
|
23
|
+
def data_scratch
|
24
|
+
scratch[:data_resources] ||= {}
|
25
|
+
end
|
26
|
+
|
27
|
+
def data_to_test
|
28
|
+
data_scratch['Location'] ||= []
|
29
|
+
end
|
30
|
+
|
31
|
+
run do
|
32
|
+
omit_if !location_data.present?, "No data provided; skipping test."
|
33
|
+
|
34
|
+
# if the input is a url, else it is a json
|
35
|
+
if location_data.strip[0] != '{'
|
36
|
+
assert_valid_http_uri(location_data, "Location provided is not a valid http uri.")
|
37
|
+
get location_data
|
38
|
+
assert_response_status(200)
|
39
|
+
assert_valid_json(request.response_body, "Data received from request is not a valid JSON")
|
40
|
+
data = request.response_body
|
41
|
+
else
|
42
|
+
assert_valid_json(location_data, "JSON inputted was not in a valid format")
|
43
|
+
data = location_data
|
44
|
+
end
|
45
|
+
|
46
|
+
resource = FHIR::Json.from_json(data)
|
47
|
+
assert resource.is_a?(FHIR::Model), "Could not generate a valid resource from the input provided"
|
48
|
+
|
49
|
+
if resource.is_a?(FHIR::Model)
|
50
|
+
data_to_test << resource
|
51
|
+
end
|
52
|
+
end
|
53
|
+
end
|
54
|
+
end
|
@@ -0,0 +1,54 @@
|
|
1
|
+
require 'json'
|
2
|
+
|
3
|
+
module UDSPlusTestKit
|
4
|
+
class ReadPatientReportingParametersTest < Inferno::Test
|
5
|
+
id :uds_plus_read_patient_reporting_parameters_test
|
6
|
+
title 'Receive UDS+ Patient Reporting Parameters Data'
|
7
|
+
description %(
|
8
|
+
Test takes from the user either: the http location of patient reporting parameters data
|
9
|
+
or the raw JSON of the data itself.
|
10
|
+
It attempts to GET the data stored at the given location if a link is provided,
|
11
|
+
then validates whether a FHIR resource can be generated from the input data.
|
12
|
+
)
|
13
|
+
|
14
|
+
input :patient_reporting_parameters_data,
|
15
|
+
title: 'Patient Reporting Parameters Data',
|
16
|
+
optional: true,
|
17
|
+
description: %q(
|
18
|
+
User can input the data as:
|
19
|
+
a URL link to the location of the data (ex: http://www.example.com/patient_reporting_parameters_data.json)
|
20
|
+
OR a JSON string that composes the data. Leaving this blank will skip the test.
|
21
|
+
)
|
22
|
+
|
23
|
+
def data_scratch
|
24
|
+
scratch[:data_resources] ||= {}
|
25
|
+
end
|
26
|
+
|
27
|
+
def data_to_test
|
28
|
+
data_scratch['Parameters'] ||= []
|
29
|
+
end
|
30
|
+
|
31
|
+
run do
|
32
|
+
omit_if !patient_reporting_parameters_data.present?, "No data provided; skipping test."
|
33
|
+
|
34
|
+
# if the input is a url, else it is a json
|
35
|
+
if patient_reporting_parameters_data.strip[0] != '{'
|
36
|
+
assert_valid_http_uri(patient_reporting_parameters_data, "Location provided is not a valid http uri.")
|
37
|
+
get patient_reporting_parameters_data
|
38
|
+
assert_response_status(200)
|
39
|
+
assert_valid_json(request.response_body, "Data received from request is not a valid JSON")
|
40
|
+
data = request.response_body
|
41
|
+
else
|
42
|
+
assert_valid_json(patient_reporting_parameters_data, "JSON inputted was not in a valid format")
|
43
|
+
data = patient_reporting_parameters_data
|
44
|
+
end
|
45
|
+
|
46
|
+
resource = FHIR::Json.from_json(data)
|
47
|
+
assert resource.is_a?(FHIR::Model), "Could not generate a valid resource from the input provided"
|
48
|
+
|
49
|
+
if resource.is_a?(FHIR::Model)
|
50
|
+
data_to_test << resource
|
51
|
+
end
|
52
|
+
end
|
53
|
+
end
|
54
|
+
end
|
@@ -29,6 +29,18 @@ require_relative './read_med_statement_test'
|
|
29
29
|
require_relative '../validate_med_statement_test'
|
30
30
|
require_relative './read_service_request_test'
|
31
31
|
require_relative '../validate_service_request_test'
|
32
|
+
require_relative './read_location_test'
|
33
|
+
require_relative '../validate_location_test'
|
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require_relative './read_allergy_intolerance_test'
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require_relative '../validate_allergy_intolerance_test'
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require_relative './read_adverse_event_test'
|
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require_relative '../validate_adverse_event_test'
|
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require_relative './read_clinical_result_test'
|
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+
require_relative '../validate_clinical_result_test'
|
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require_relative './read_data_urls_test'
|
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require_relative '../validate_data_urls_test'
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require_relative './read_patient_reporting_parameters_test'
|
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require_relative '../validate_patient_reporting_parameters_test'
|
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module UDSPlusTestKit
|
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class UDSPlusResourceTestGroup < Inferno::TestGroup
|
@@ -61,12 +73,20 @@ module UDSPlusTestKit
|
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test from: :uds_plus_validate_related_person_test
|
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test from: :uds_plus_read_immunization_test
|
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test from: :uds_plus_validate_immunization_test
|
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test from: :uds_plus_read_location_test
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test from: :uds_plus_validate_location_test
|
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test from: :uds_plus_read_allergy_intolerance_test
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test from: :uds_plus_validate_allergy_intolerance_test
|
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test from: :uds_plus_read_adverse_event_test
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test from: :uds_plus_validate_adverse_event_test
|
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test from: :uds_plus_read_income_test
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test from: :uds_plus_validate_income_test
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test from: :uds_plus_read_sexual_orientation_test
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test from: :uds_plus_validate_sexual_orientation_test
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test from: :uds_plus_read_lab_test
|
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test from: :uds_plus_validate_lab_test
|
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+
test from: :uds_plus_read_clinical_result_test
|
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+
test from: :uds_plus_validate_clinical_result_test
|
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test from: :uds_plus_read_special_observation_test
|
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test from: :uds_plus_validate_special_observation_test
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test from: :uds_plus_read_medication_request_test
|
@@ -75,5 +95,9 @@ module UDSPlusTestKit
|
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test from: :uds_plus_validate_medication_statement_test
|
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test from: :uds_plus_read_service_request_test
|
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test from: :uds_plus_validate_service_request_test
|
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+
test from: :uds_plus_read_data_urls_test
|
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test from: :uds_plus_validate_data_urls_test
|
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test from: :uds_plus_read_patient_reporting_parameters_test
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test from: :uds_plus_validate_patient_reporting_parameters_test
|
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end
|
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end
|
@@ -20,7 +20,9 @@ module UDSPlusTestKit
|
|
20
20
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'Observation', 'Patient', 'Procedure',
|
21
21
|
'RelatedPerson', 'Immunization',
|
22
22
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'ServiceRequest', 'MedicationRequest',
|
23
|
-
'MedicationStatement'
|
23
|
+
'MedicationStatement', 'Location',
|
24
|
+
'AdverseEvent', 'AllergyIntolerance',
|
25
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+
'Parameters'
|
24
26
|
]
|
25
27
|
end
|
26
28
|
|
@@ -17,6 +17,12 @@ require_relative '../validate_lab_test'
|
|
17
17
|
require_relative '../validate_med_request_test'
|
18
18
|
require_relative '../validate_med_statement_test'
|
19
19
|
require_relative '../validate_service_request_test'
|
20
|
+
require_relative '../validate_location_test'
|
21
|
+
require_relative '../validate_allergy_intolerance_test'
|
22
|
+
require_relative '../validate_adverse_event_test'
|
23
|
+
require_relative '../validate_clinical_result_test'
|
24
|
+
require_relative '../validate_data_urls_test'
|
25
|
+
require_relative '../validate_patient_reporting_parameters_test'
|
20
26
|
|
21
27
|
module UDSPlusTestKit
|
22
28
|
class UDSPlusTestGroup < Inferno::TestGroup
|
@@ -41,13 +47,19 @@ module UDSPlusTestKit
|
|
41
47
|
test from: :uds_plus_validate_procedure_test
|
42
48
|
test from: :uds_plus_validate_related_person_test
|
43
49
|
test from: :uds_plus_validate_immunization_test
|
50
|
+
test from: :uds_plus_validate_location_test
|
51
|
+
test from: :uds_plus_validate_allergy_intolerance_test
|
52
|
+
test from: :uds_plus_validate_adverse_event_test
|
44
53
|
test from: :uds_plus_validate_income_test
|
45
54
|
test from: :uds_plus_validate_sexual_orientation_test
|
46
55
|
test from: :uds_plus_validate_lab_test
|
56
|
+
test from: :uds_plus_validate_clinical_result_test
|
47
57
|
test from: :uds_plus_validate_special_observation_test
|
48
58
|
test from: :uds_plus_validate_medication_request_test
|
49
59
|
test from: :uds_plus_validate_medication_statement_test
|
50
60
|
test from: :uds_plus_validate_service_request_test
|
61
|
+
test from: :uds_plus_validate_data_urls_test
|
62
|
+
test from: :uds_plus_validate_patient_reporting_parameters_test
|
51
63
|
test from: :uds_plus_invalid_type_test
|
52
64
|
end
|
53
65
|
end
|
@@ -22,6 +22,12 @@ require_relative '../validate_lab_test'
|
|
22
22
|
require_relative '../validate_med_request_test'
|
23
23
|
require_relative '../validate_med_statement_test'
|
24
24
|
require_relative '../validate_service_request_test'
|
25
|
+
require_relative '../validate_location_test'
|
26
|
+
require_relative '../validate_allergy_intolerance_test'
|
27
|
+
require_relative '../validate_adverse_event_test'
|
28
|
+
require_relative '../validate_clinical_result_test'
|
29
|
+
require_relative '../validate_data_urls_test'
|
30
|
+
require_relative '../validate_patient_reporting_parameters_test'
|
25
31
|
|
26
32
|
module UDSPlusTestKit
|
27
33
|
class UDSPlusPostGroup < Inferno::TestGroup
|
@@ -47,13 +53,19 @@ module UDSPlusTestKit
|
|
47
53
|
test from: :uds_plus_validate_procedure_test
|
48
54
|
test from: :uds_plus_validate_related_person_test
|
49
55
|
test from: :uds_plus_validate_immunization_test
|
56
|
+
test from: :uds_plus_validate_location_test
|
57
|
+
test from: :uds_plus_validate_allergy_intolerance_test
|
58
|
+
test from: :uds_plus_validate_adverse_event_test
|
50
59
|
test from: :uds_plus_validate_income_test
|
51
60
|
test from: :uds_plus_validate_sexual_orientation_test
|
52
61
|
test from: :uds_plus_validate_lab_test
|
62
|
+
test from: :uds_plus_validate_clinical_result_test
|
53
63
|
test from: :uds_plus_validate_special_observation_test
|
54
64
|
test from: :uds_plus_validate_medication_request_test
|
55
65
|
test from: :uds_plus_validate_medication_statement_test
|
56
66
|
test from: :uds_plus_validate_service_request_test
|
67
|
+
test from: :uds_plus_validate_data_urls_test
|
68
|
+
test from: :uds_plus_validate_patient_reporting_parameters_test
|
57
69
|
test from: :uds_plus_invalid_type_test
|
58
70
|
end
|
59
71
|
end
|
@@ -9,7 +9,7 @@ module UDSPlusTestKit
|
|
9
9
|
title 'UDS+ Test Kit'
|
10
10
|
description %(
|
11
11
|
The UDS+ Test Kit tests systems for their conformance to the [UDS+
|
12
|
-
Implementation Guide
|
12
|
+
Implementation Guide v1.0.0](http://udsplus.drajer.com).
|
13
13
|
The included tests function as a rudimentary data receiver. This receiver will
|
14
14
|
take a provided Import Manifest, either as an HTTP location or as a raw json,
|
15
15
|
and validate its contents. This includes validating the structure of the manifest,
|
@@ -78,7 +78,7 @@ module UDSPlusTestKit
|
|
78
78
|
url: 'https://github.com/inferno-framework/uds-plus-test-kit/'
|
79
79
|
},
|
80
80
|
{
|
81
|
-
label: 'UDS+ Implementation Guide
|
81
|
+
label: 'UDS+ Implementation Guide v1.0.0',
|
82
82
|
url: 'http://udsplus.drajer.com'
|
83
83
|
}
|
84
84
|
]
|
@@ -0,0 +1,33 @@
|
|
1
|
+
require 'json'
|
2
|
+
require_relative './version'
|
3
|
+
|
4
|
+
module UDSPlusTestKit
|
5
|
+
class ValidateAdverseEventTest < Inferno::Test
|
6
|
+
id :uds_plus_validate_adverse_event_test
|
7
|
+
title 'Validate UDS+ Adverse Event Data'
|
8
|
+
description %(
|
9
|
+
Test takes the Adverse Event resources identified
|
10
|
+
by the import manifest, and validates whether they conform
|
11
|
+
to their UDS+ Structure Definitions.
|
12
|
+
)
|
13
|
+
|
14
|
+
def data_scratch
|
15
|
+
scratch[:data_resources] ||= {}
|
16
|
+
end
|
17
|
+
|
18
|
+
def data_to_test
|
19
|
+
data_scratch['AdverseEvent'] ||= []
|
20
|
+
end
|
21
|
+
|
22
|
+
run do
|
23
|
+
omit_if data_to_test.empty?, "No data of this type was identified."
|
24
|
+
|
25
|
+
profile_definition = 'http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-adverseevent'
|
26
|
+
profile_with_version = "#{profile_definition}|#{UDS_PLUS_VERSION}"
|
27
|
+
|
28
|
+
data_to_test.each do |resource|
|
29
|
+
assert_valid_resource(resource: resource, profile_url: profile_with_version)
|
30
|
+
end
|
31
|
+
end
|
32
|
+
end
|
33
|
+
end
|
@@ -0,0 +1,33 @@
|
|
1
|
+
require 'json'
|
2
|
+
require_relative './version'
|
3
|
+
|
4
|
+
module UDSPlusTestKit
|
5
|
+
class ValidateAllergyIntoleranceTest < Inferno::Test
|
6
|
+
id :uds_plus_validate_allergy_intolerance_test
|
7
|
+
title 'Validate UDS+ Allergy Intolerance Data'
|
8
|
+
description %(
|
9
|
+
Test takes the Allergy Intolerance resources identified
|
10
|
+
by the import manifest, and validates whether they conform
|
11
|
+
to their UDS+ Structure Definitions.
|
12
|
+
)
|
13
|
+
|
14
|
+
def data_scratch
|
15
|
+
scratch[:data_resources] ||= {}
|
16
|
+
end
|
17
|
+
|
18
|
+
def data_to_test
|
19
|
+
data_scratch['AllergyIntolerance'] ||= []
|
20
|
+
end
|
21
|
+
|
22
|
+
run do
|
23
|
+
omit_if data_to_test.empty?, "No data of this type was identified."
|
24
|
+
|
25
|
+
profile_definition = 'http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-allergyintolerance'
|
26
|
+
profile_with_version = "#{profile_definition}|#{UDS_PLUS_VERSION}"
|
27
|
+
|
28
|
+
data_to_test.each do |resource|
|
29
|
+
assert_valid_resource(resource: resource, profile_url: profile_with_version)
|
30
|
+
end
|
31
|
+
end
|
32
|
+
end
|
33
|
+
end
|
@@ -0,0 +1,65 @@
|
|
1
|
+
require 'json'
|
2
|
+
require_relative './version'
|
3
|
+
|
4
|
+
module UDSPlusTestKit
|
5
|
+
class ValidateClinicalResultTest < Inferno::Test
|
6
|
+
id :uds_plus_validate_clinical_result_test
|
7
|
+
title 'Validate UDS+ Clinical Result Data'
|
8
|
+
description %(
|
9
|
+
Test takes the Clinical Result resources identified
|
10
|
+
by the import manifest, and validates whether they conform
|
11
|
+
to their UDS+ Structure Definitions.
|
12
|
+
)
|
13
|
+
|
14
|
+
def data_scratch
|
15
|
+
scratch[:data_resources] ||= {}
|
16
|
+
end
|
17
|
+
|
18
|
+
def data_to_test
|
19
|
+
data_scratch['Observation'] ||= []
|
20
|
+
end
|
21
|
+
|
22
|
+
run do
|
23
|
+
omit_if data_to_test.empty?, "No data of this type was identified."
|
24
|
+
|
25
|
+
profile_definition = 'http://hl7.org/fhir/us/uds-plus/StructureDefinition/de-identified-uds-plus-clinical-result-observation'
|
26
|
+
profile_with_version = "#{profile_definition}|#{UDS_PLUS_VERSION}"
|
27
|
+
|
28
|
+
no_resource_of_this_type = true
|
29
|
+
identifier_fail_message = %(Resource.meta.profile should contain the HTTP location of the
|
30
|
+
resource's Structure Definition. Resource.meta.profile either does
|
31
|
+
not exist in this resource, or its contents do not point to a valid
|
32
|
+
location for type Observation. **NOTE:**
|
33
|
+
If this error occurs, it can trigger a fail for all observation-type tests,
|
34
|
+
regardless of whether both tests were meant to run.)
|
35
|
+
|
36
|
+
data_to_test.each do |resource|
|
37
|
+
# All these assertions are to differentiate Observation data between orientation types.
|
38
|
+
# A resource is skipped if it cannot be identified as an clinical result resource.
|
39
|
+
type_identifier = resource.to_hash
|
40
|
+
assert type_identifier['meta'].present?, identifier_fail_message
|
41
|
+
|
42
|
+
type_identifier = type_identifier['meta']
|
43
|
+
assert type_identifier.is_a?(Hash), identifier_fail_message
|
44
|
+
assert type_identifier['profile'].present?, identifier_fail_message
|
45
|
+
|
46
|
+
type_identifier = type_identifier['profile']
|
47
|
+
assert type_identifier.is_a?(Array), identifier_fail_message
|
48
|
+
assert !type_identifier.empty?, identifier_fail_message
|
49
|
+
|
50
|
+
|
51
|
+
type_identifier = type_identifier.first
|
52
|
+
assert type_identifier.is_a?(String), identifier_fail_message
|
53
|
+
if !type_identifier.include?("clinical-result")
|
54
|
+
next
|
55
|
+
end
|
56
|
+
|
57
|
+
no_resource_of_this_type = false
|
58
|
+
|
59
|
+
assert_valid_resource(resource: resource, profile_url: profile_with_version)
|
60
|
+
end
|
61
|
+
|
62
|
+
omit_if no_resource_of_this_type, "No data of this type was identified."
|
63
|
+
end
|
64
|
+
end
|
65
|
+
end
|
@@ -0,0 +1,65 @@
|
|
1
|
+
require 'json'
|
2
|
+
require_relative './version'
|
3
|
+
|
4
|
+
module UDSPlusTestKit
|
5
|
+
class ValidateDataUrlsTest < Inferno::Test
|
6
|
+
id :uds_plus_validate_data_urls_test
|
7
|
+
title 'Validate UDS+ Data Urls Data'
|
8
|
+
description %(
|
9
|
+
Test takes the Data Urls resources identified
|
10
|
+
by the import manifest, and validates whether they conform
|
11
|
+
to their UDS+ Structure Definitions.
|
12
|
+
)
|
13
|
+
|
14
|
+
def data_scratch
|
15
|
+
scratch[:data_resources] ||= {}
|
16
|
+
end
|
17
|
+
|
18
|
+
def data_to_test
|
19
|
+
data_scratch['Parameters'] ||= []
|
20
|
+
end
|
21
|
+
|
22
|
+
run do
|
23
|
+
omit_if data_to_test.empty?, "No data of this type was identified."
|
24
|
+
|
25
|
+
profile_definition = 'http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-deidentify-operation-data-urls-parameter'
|
26
|
+
profile_with_version = "#{profile_definition}|#{UDS_PLUS_VERSION}"
|
27
|
+
|
28
|
+
no_resource_of_this_type = true
|
29
|
+
identifier_fail_message = %(Resource.meta.profile should contain the HTTP location of the
|
30
|
+
resource's Structure Definition. Resource.meta.profile either does
|
31
|
+
not exist in this resource, or its contents do not point to a valid
|
32
|
+
location for type Parameters. **NOTE:**
|
33
|
+
If this error occurs, it can trigger a fail for all parameters-type tests,
|
34
|
+
regardless of whether both tests were meant to run.)
|
35
|
+
|
36
|
+
data_to_test.each do |resource|
|
37
|
+
# All these assertions are to differentiate Parameters data between orientation types.
|
38
|
+
# A resource is skipped if it cannot be identified as an data_urls resource.
|
39
|
+
type_identifier = resource.to_hash
|
40
|
+
assert type_identifier['meta'].present?, identifier_fail_message
|
41
|
+
|
42
|
+
type_identifier = type_identifier['meta']
|
43
|
+
assert type_identifier.is_a?(Hash), identifier_fail_message
|
44
|
+
assert type_identifier['profile'].present?, identifier_fail_message
|
45
|
+
|
46
|
+
type_identifier = type_identifier['profile']
|
47
|
+
assert type_identifier.is_a?(Array), identifier_fail_message
|
48
|
+
assert !type_identifier.empty?, identifier_fail_message
|
49
|
+
|
50
|
+
|
51
|
+
type_identifier = type_identifier.first
|
52
|
+
assert type_identifier.is_a?(String), identifier_fail_message
|
53
|
+
if !type_identifier.include?("-data-urls-")
|
54
|
+
next
|
55
|
+
end
|
56
|
+
|
57
|
+
no_resource_of_this_type = false
|
58
|
+
|
59
|
+
assert_valid_resource(resource: resource, profile_url: profile_with_version)
|
60
|
+
end
|
61
|
+
|
62
|
+
omit_if no_resource_of_this_type, "No data of this type was identified."
|
63
|
+
end
|
64
|
+
end
|
65
|
+
end
|
@@ -34,7 +34,7 @@ module UDSPlusTestKit
|
|
34
34
|
regardless of whether both tests were meant to run.)
|
35
35
|
|
36
36
|
data_to_test.each do |resource|
|
37
|
-
# All these assertions are to
|
37
|
+
# All these assertions are to differentiate Observation data between orientation types.
|
38
38
|
# A resource is skipped if it cannot be identified as an income resource.
|
39
39
|
type_identifier = resource.to_hash
|
40
40
|
assert type_identifier['meta'].present?, identifier_fail_message
|
@@ -34,7 +34,7 @@ module UDSPlusTestKit
|
|
34
34
|
regardless of whether both tests were meant to run.)
|
35
35
|
|
36
36
|
data_to_test.each do |resource|
|
37
|
-
# All these assertions are to
|
37
|
+
# All these assertions are to differentiate Observation data between Income Data and Sexual Orientation data.
|
38
38
|
# A resource is skipped if it is a sexual orientation resource and fails if it cannot be identified as an income resource.
|
39
39
|
type_identifier = resource.to_hash
|
40
40
|
assert type_identifier['meta'].present?, identifier_fail_message
|
@@ -0,0 +1,33 @@
|
|
1
|
+
require 'json'
|
2
|
+
require_relative './version'
|
3
|
+
|
4
|
+
module UDSPlusTestKit
|
5
|
+
class ValidateLocationTest < Inferno::Test
|
6
|
+
id :uds_plus_validate_location_test
|
7
|
+
title 'Validate UDS+ Location Data'
|
8
|
+
description %(
|
9
|
+
Test takes the Location resources identified
|
10
|
+
by the import manifest, and validates whether they conform
|
11
|
+
to their UDS+ Structure Definitions.
|
12
|
+
)
|
13
|
+
|
14
|
+
def data_scratch
|
15
|
+
scratch[:data_resources] ||= {}
|
16
|
+
end
|
17
|
+
|
18
|
+
def data_to_test
|
19
|
+
data_scratch['Location'] ||= []
|
20
|
+
end
|
21
|
+
|
22
|
+
run do
|
23
|
+
omit_if data_to_test.empty?, "No data of this type was identified."
|
24
|
+
|
25
|
+
profile_definition = 'http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-location'
|
26
|
+
profile_with_version = "#{profile_definition}|#{UDS_PLUS_VERSION}"
|
27
|
+
|
28
|
+
data_to_test.each do |resource|
|
29
|
+
assert_valid_resource(resource: resource, profile_url: profile_with_version)
|
30
|
+
end
|
31
|
+
end
|
32
|
+
end
|
33
|
+
end
|
@@ -0,0 +1,65 @@
|
|
1
|
+
require 'json'
|
2
|
+
require_relative './version'
|
3
|
+
|
4
|
+
module UDSPlusTestKit
|
5
|
+
class ValidatePatientReportingParametersTest < Inferno::Test
|
6
|
+
id :uds_plus_validate_patient_reporting_parameters_test
|
7
|
+
title 'Validate UDS+ Patient Reporting Parameters Data'
|
8
|
+
description %(
|
9
|
+
Test takes the Patient Reporting Parameters resources identified
|
10
|
+
by the import manifest, and validates whether they conform
|
11
|
+
to their UDS+ Structure Definitions.
|
12
|
+
)
|
13
|
+
|
14
|
+
def data_scratch
|
15
|
+
scratch[:data_resources] ||= {}
|
16
|
+
end
|
17
|
+
|
18
|
+
def data_to_test
|
19
|
+
data_scratch['Parameters'] ||= []
|
20
|
+
end
|
21
|
+
|
22
|
+
run do
|
23
|
+
omit_if data_to_test.empty?, "No data of this type was identified."
|
24
|
+
|
25
|
+
profile_definition = 'http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-patient-reporting-parameters'
|
26
|
+
profile_with_version = "#{profile_definition}|#{UDS_PLUS_VERSION}"
|
27
|
+
|
28
|
+
no_resource_of_this_type = true
|
29
|
+
identifier_fail_message = %(Resource.meta.profile should contain the HTTP location of the
|
30
|
+
resource's Structure Definition. Resource.meta.profile either does
|
31
|
+
not exist in this resource, or its contents do not point to a valid
|
32
|
+
location for type Parameters. **NOTE:**
|
33
|
+
If this error occurs, it can trigger a fail for all parameters-type tests,
|
34
|
+
regardless of whether both tests were meant to run.)
|
35
|
+
|
36
|
+
data_to_test.each do |resource|
|
37
|
+
# All these assertions are to differentiate Parameters data between orientation types.
|
38
|
+
# A resource is skipped if it cannot be identified as a patient reporting parameters resource.
|
39
|
+
type_identifier = resource.to_hash
|
40
|
+
assert type_identifier['meta'].present?, identifier_fail_message
|
41
|
+
|
42
|
+
type_identifier = type_identifier['meta']
|
43
|
+
assert type_identifier.is_a?(Hash), identifier_fail_message
|
44
|
+
assert type_identifier['profile'].present?, identifier_fail_message
|
45
|
+
|
46
|
+
type_identifier = type_identifier['profile']
|
47
|
+
assert type_identifier.is_a?(Array), identifier_fail_message
|
48
|
+
assert !type_identifier.empty?, identifier_fail_message
|
49
|
+
|
50
|
+
|
51
|
+
type_identifier = type_identifier.first
|
52
|
+
assert type_identifier.is_a?(String), identifier_fail_message
|
53
|
+
if !type_identifier.include?("patient-reporting")
|
54
|
+
next
|
55
|
+
end
|
56
|
+
|
57
|
+
no_resource_of_this_type = false
|
58
|
+
|
59
|
+
assert_valid_resource(resource: resource, profile_url: profile_with_version)
|
60
|
+
end
|
61
|
+
|
62
|
+
omit_if no_resource_of_this_type, "No data of this type was identified."
|
63
|
+
end
|
64
|
+
end
|
65
|
+
end
|
@@ -34,7 +34,7 @@ module UDSPlusTestKit
|
|
34
34
|
regardless of whether both tests were meant to run.)
|
35
35
|
|
36
36
|
data_to_test.each do |resource|
|
37
|
-
# All these assertions are to
|
37
|
+
# All these assertions are to differentiate Observation data between orientation types.
|
38
38
|
# A resource is skipped if it cannot be identified as a sexual orientation resource.
|
39
39
|
type_identifier = resource.to_hash
|
40
40
|
assert type_identifier['meta'].present?, identifier_fail_message
|
@@ -32,7 +32,7 @@ module UDSPlusTestKit
|
|
32
32
|
regardless of whether both tests were meant to run.)
|
33
33
|
|
34
34
|
data_to_test.each do |resource|
|
35
|
-
# All these assertions are to
|
35
|
+
# All these assertions are to differentiate Observation data between orientation types.
|
36
36
|
# A resource is skipped if it is one of the observation types with their own tests.
|
37
37
|
type_identifier = resource.to_hash
|
38
38
|
assert type_identifier['meta'].present?, identifier_fail_message
|
@@ -48,7 +48,14 @@ module UDSPlusTestKit
|
|
48
48
|
|
49
49
|
type_identifier = type_identifier.first
|
50
50
|
assert type_identifier.is_a?(String), identifier_fail_message
|
51
|
-
|
51
|
+
|
52
|
+
known_observations = ["income", "sexual-orientation", "-lab-", "clinical-result"]
|
53
|
+
is_known_observation = false
|
54
|
+
known_observations.each do |cur|
|
55
|
+
is_known_observation = (is_known_observation || type_identifier.include?(cur))
|
56
|
+
end
|
57
|
+
|
58
|
+
if is_known_observation
|
52
59
|
next
|
53
60
|
else
|
54
61
|
assert type_identifier.downcase.include?("observation"), identifier_fail_message
|
metadata
CHANGED
@@ -1,14 +1,14 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: uds_plus_test_kit
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 1.0.
|
4
|
+
version: 1.0.5
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- Leap Orbit
|
8
8
|
autorequire:
|
9
9
|
bindir: bin
|
10
10
|
cert_chain: []
|
11
|
-
date: 2023-
|
11
|
+
date: 2023-09-14 00:00:00.000000000 Z
|
12
12
|
dependencies:
|
13
13
|
- !ruby/object:Gem::Dependency
|
14
14
|
name: inferno_core
|
@@ -97,15 +97,21 @@ files:
|
|
97
97
|
- lib/uds_plus_test_kit/examples/manifest.json
|
98
98
|
- lib/uds_plus_test_kit/examples/observation.ndjson
|
99
99
|
- lib/uds_plus_test_kit/examples/patient.ndjson
|
100
|
+
- lib/uds_plus_test_kit/input_resource_tests/read_adverse_event_test.rb
|
101
|
+
- lib/uds_plus_test_kit/input_resource_tests/read_allergy_intolerance_test.rb
|
102
|
+
- lib/uds_plus_test_kit/input_resource_tests/read_clinical_result_test.rb
|
100
103
|
- lib/uds_plus_test_kit/input_resource_tests/read_coverage_test.rb
|
104
|
+
- lib/uds_plus_test_kit/input_resource_tests/read_data_urls_test.rb
|
101
105
|
- lib/uds_plus_test_kit/input_resource_tests/read_diagnosis_test.rb
|
102
106
|
- lib/uds_plus_test_kit/input_resource_tests/read_encounter_test.rb
|
103
107
|
- lib/uds_plus_test_kit/input_resource_tests/read_immunization_test.rb
|
104
108
|
- lib/uds_plus_test_kit/input_resource_tests/read_income_test.rb
|
105
109
|
- lib/uds_plus_test_kit/input_resource_tests/read_lab_test.rb
|
110
|
+
- lib/uds_plus_test_kit/input_resource_tests/read_location_test.rb
|
106
111
|
- lib/uds_plus_test_kit/input_resource_tests/read_manifest_ind_test.rb
|
107
112
|
- lib/uds_plus_test_kit/input_resource_tests/read_med_request_test.rb
|
108
113
|
- lib/uds_plus_test_kit/input_resource_tests/read_med_statement_test.rb
|
114
|
+
- lib/uds_plus_test_kit/input_resource_tests/read_patient_reporting_parameters_test.rb
|
109
115
|
- lib/uds_plus_test_kit/input_resource_tests/read_patient_test.rb
|
110
116
|
- lib/uds_plus_test_kit/input_resource_tests/read_procedure_test.rb
|
111
117
|
- lib/uds_plus_test_kit/input_resource_tests/read_related_person_test.rb
|
@@ -122,14 +128,20 @@ files:
|
|
122
128
|
- lib/uds_plus_test_kit/post_tests/post_manifest_test.rb
|
123
129
|
- lib/uds_plus_test_kit/post_tests/read_post_test.rb
|
124
130
|
- lib/uds_plus_test_kit/uds_plus_test_suite.rb
|
131
|
+
- lib/uds_plus_test_kit/validate_adverse_event_test.rb
|
132
|
+
- lib/uds_plus_test_kit/validate_allergy_intolerance_test.rb
|
133
|
+
- lib/uds_plus_test_kit/validate_clinical_result_test.rb
|
125
134
|
- lib/uds_plus_test_kit/validate_coverage_test.rb
|
135
|
+
- lib/uds_plus_test_kit/validate_data_urls_test.rb
|
126
136
|
- lib/uds_plus_test_kit/validate_diagnosis_test.rb
|
127
137
|
- lib/uds_plus_test_kit/validate_encounter_test.rb
|
128
138
|
- lib/uds_plus_test_kit/validate_immunization_test.rb
|
129
139
|
- lib/uds_plus_test_kit/validate_income_test.rb
|
130
140
|
- lib/uds_plus_test_kit/validate_lab_test.rb
|
141
|
+
- lib/uds_plus_test_kit/validate_location_test.rb
|
131
142
|
- lib/uds_plus_test_kit/validate_med_request_test.rb
|
132
143
|
- lib/uds_plus_test_kit/validate_med_statement_test.rb
|
144
|
+
- lib/uds_plus_test_kit/validate_patient_reporting_parameters_test.rb
|
133
145
|
- lib/uds_plus_test_kit/validate_patient_test.rb
|
134
146
|
- lib/uds_plus_test_kit/validate_procedure_test.rb
|
135
147
|
- lib/uds_plus_test_kit/validate_related_person_test.rb
|