uds_plus_test_kit 1.0.2 → 1.0.4

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checksums.yaml CHANGED
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@@ -67,6 +67,10 @@
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  "system": "phone",
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  "value": "234-234-5648"
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  }
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+ },
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+ {
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+ "name" : "hcPrenatalCareByReferralOnly",
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+ "valueBoolean" : true
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  }
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  ]
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  },
@@ -1,3 +1,3 @@
1
1
  { "resourceType": "Observation", "id": "de-identified-example", "meta": { "profile": [ "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-lab-observation" ] }, "status": "final", "category": [ { "coding": [ { "system" : "http://terminology.hl7.org/CodeSystem/observation-category", "code" : "laboratory", "display" : "Laboratory" } ] } ], "code": { "coding": [ { "system" : "http://loinc.org", "code" : "718-7", "display" : "Hemoglobin [Mass/volume] in Blood" } ] }, "subject": { "reference": "Patient/de-identified-example" }, "encounter": { "reference": "Encounter/de-identified-example" }, "effectiveDateTime" : "2005", "issued": "2005-04-03T15:30:10+01:00", "performer": [ { "reference": "Practitioner/example" } ], "valueQuantity" : { "value" : 17, "unit" : "g/dL", "system" : "http://unitsofmeasure.org" }, "bodySite": { "coding": [ { "system": "http://snomed.info/sct", "code": "368208006", "display": "Left upper arm structure" } ] }}
2
2
  { "resourceType": "Observation", "id": "de-identified-income-example", "meta": { "profile": [ "http://hl7.org/fhir/us/uds-plus/StructureDefinition/de-identified-uds-plus-income-observation" ] }, "status": "final", "code": { "coding": [ { "system": "http://loinc.org", "code": "63058-2" } ] }, "subject": { "reference": "Patient/de-identified-example" }, "effectiveDateTime": "2016-03-28", "valueRange": { "low": { "value": 101 }, "high": { "value": 150 } }}
3
- { "resourceType": "Observation", "id": "de-identified-sexual-orientation-example", "meta": { "profile": [ "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-sexual-orientation-observation" ] }, "status": "final", "code": { "coding": [ { "system": "http://loinc.org", "code": "76690-7" } ] }, "subject": { "reference": "Patient/example" }, "effectiveDateTime": "2007", "valueCodeableConcept": { "coding": [ { "system": "http://snomed.info/sct", "code": "20430005", "display": "Heterosexual state" } ] }}
3
+ { "resourceType": "Observation", "id": "de-identified-sexual-orientation-example", "meta": { "profile": [ "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-sexual-orientation-observation" ] }, "status": "final", "code": { "coding": [ { "system": "http://loinc.org", "code": "76690-7" } ] }, "subject": { "reference": "Patient/example" }, "effectiveDateTime": "2007", "valueCodeableConcept": { "coding": [ { "system": "http://terminology.hl7.org/CodeSystem/v3-NullFlavor", "code": "NASK", "display": "not asked" } ] }}
@@ -1,2 +1,2 @@
1
- { "resourceType": "Patient", "id": "de-identified-example", "meta": { "extension": [ { "url": "http://hl7.org/fhir/StructureDefinition/instance-name", "valueString": "De-identified Patient Example" }, { "url": "http://hl7.org/fhir/StructureDefinition/instance-description", "valueMarkdown": "This is a patient example for the *UDS+ Patient Profile*." } ], "profile": [ "http://hl7.org/fhir/us/uds-plus/StructureDefinition/de-identified-uds-plus-patient" ] }, "extension": [ { "extension": [ { "url": "ombCategory", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "2106-3", "display": "White" } }, { "url": "text", "valueString": "White" } ], "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-race" }, { "extension": [ { "url": "ombCategory", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "2135-2", "display": "Hispanic or Latino" } }, { "url": "text", "valueString": "Hispanic or Latino" } ], "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-ethnicity" }, { "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-birthsex", "valueCode": "F" }, { "url": "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-age-extension", "valueQuantity": { "value" : 36, "unit" : "yr", "system" : "http://unitsofmeasure.org", "code" : "a" } }, { "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-genderIdentity", "valueCodeableConcept": { "coding": [ { "system": "http://terminology.hl7.org/CodeSystem/v3-NullFlavor", "code": "ASKU", "display": "asked but unknown" } ], "text": "asked but unknown" } }, { "url": "http://hl7.org/fhir/us/uds-plus/StructureDefinition/udsplus-agriculture-worker-status", "valueCode": "migratory" }, { "url": "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-housing-status-extension", "valueCode": "permanent-supportive-housing" }, { "url": "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-veteran-status-extension", "valueBoolean": false } ], "active": true, "gender": "female", "address": [ { "postalCode": "03600" } ]}
2
- { "resourceType": "Patient", "id": "de-identified-smallpop-example", "meta": { "extension": [ { "url": "http://hl7.org/fhir/StructureDefinition/instance-name", "valueString": "De-identified Patient Example" }, { "url": "http://hl7.org/fhir/StructureDefinition/instance-description", "valueMarkdown": "This is a patient example for the *UDS+ Patient Profile*." } ], "profile": [ "http://hl7.org/fhir/us/uds-plus/StructureDefinition/de-identified-uds-plus-patient" ] }, "extension": [ { "extension": [ { "url": "ombCategory", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "2106-3", "display": "White" } }, { "url": "text", "valueString": "White" } ], "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-race" }, { "extension": [ { "url": "ombCategory", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "2135-2", "display": "Hispanic or Latino" } }, { "url": "text", "valueString": "Hispanic or Latino" } ], "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-ethnicity" }, { "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-birthsex", "valueCode": "F" }, { "url": "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-age-extension", "valueQuantity": { "value" : 36, "unit" : "yr", "system" : "http://unitsofmeasure.org", "code" : "a" } }, { "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-genderIdentity", "valueCodeableConcept": { "coding": [ { "system": "http://terminology.hl7.org/CodeSystem/v3-NullFlavor", "code": "ASKU", "display": "asked but unknown" } ], "text": "asked but unknown" } } ], "active": true, "gender": "female", "address": [ { "postalCode": "00000", "_postalCode": { "extension" : [ { "url" : "http://hl7.org/fhir/StructureDefinition/data-absent-reason", "valueCode" : "masked" }] } } ]}
1
+ { "resourceType": "Patient", "id": "de-identified-smallpop-example", "meta": { "extension": [ { "url": "http://hl7.org/fhir/StructureDefinition/instance-name", "valueString": "De-identified Patient Example" }, { "url": "http://hl7.org/fhir/StructureDefinition/instance-description", "valueMarkdown": "This is a patient example for the *UDS+ Patient Profile*." } ], "profile": [ "http://hl7.org/fhir/us/uds-plus/StructureDefinition/de-identified-uds-plus-patient" ] }, "extension": [ { "extension": [ { "url": "ombCategory", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "2106-3", "display": "White" } }, { "url" : "detailed", "valueCoding" : { "system" : "urn:oid:2.16.840.1.113883.6.238", "code" : "2108-9", "display" : "European" } }, { "url": "text", "valueString": "White" } ], "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-race" }, { "extension": [ { "url": "ombCategory", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "2135-2", "display": "Hispanic or Latino" } }, { "url" : "detailed", "valueCoding" : { "system" : "urn:oid:2.16.840.1.113883.6.238", "code" : "2184-0", "display" : "Dominican" } }, { "url": "text", "valueString": "Hispanic or Latino" } ], "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-ethnicity" }, { "url": "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-birthsex-extension", "valueCode": "F" }, { "url": "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-age-extension", "valueQuantity": { "value" : 36, "unit" : "yr", "system" : "http://unitsofmeasure.org", "code" : "a" } }, { "url": "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-gender-identity-extension", "valueCodeableConcept": { "coding": [ { "system": "http://terminology.hl7.org/CodeSystem/v3-NullFlavor", "code": "NASK", "display": "Not Asked" } ], "text": "Not Asked" } } ], "active": true, "gender": "female", "address": [ { "postalCode": "00000", "_postalCode": { "extension" : [ { "url" : "http://hl7.org/fhir/StructureDefinition/data-absent-reason", "valueCode" : "masked" }] } } ]}
2
+ { "resourceType": "Patient", "id": "de-identified-example", "meta": { "extension": [ { "url": "http://hl7.org/fhir/StructureDefinition/instance-name", "valueString": "De-identified Patient Example" }, { "url": "http://hl7.org/fhir/StructureDefinition/instance-description", "valueMarkdown": "This is a patient example for the *UDS+ Patient Profile*." } ], "profile": [ "http://hl7.org/fhir/us/uds-plus/StructureDefinition/de-identified-uds-plus-patient" ] }, "extension": [ { "extension": [ { "url": "ombCategory", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "2106-3", "display": "White" } }, { "url" : "detailed", "valueCoding" : { "system" : "urn:oid:2.16.840.1.113883.6.238", "code" : "2108-9", "display" : "European" } }, { "url": "text", "valueString": "White" } ], "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-race" }, { "extension": [ { "url": "ombCategory", "valueCoding": { "system": "urn:oid:2.16.840.1.113883.6.238", "code": "2135-2", "display": "Hispanic or Latino" } }, { "url" : "detailed", "valueCoding" : { "system" : "urn:oid:2.16.840.1.113883.6.238", "code" : "2184-0", "display" : "Dominican" } }, { "url": "text", "valueString": "Hispanic or Latino" } ], "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-ethnicity" }, { "url": "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-birthsex-extension", "valueCode": "F" }, { "url": "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-age-extension", "valueQuantity": { "value" : 36, "unit" : "yr", "system" : "http://unitsofmeasure.org", "code" : "a" } }, { "url": "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-gender-identity-extension", "valueCodeableConcept": { "coding": [ { "system": "http://terminology.hl7.org/CodeSystem/v3-NullFlavor", "code": "ASKU", "display": "asked but unknown" } ], "text": "asked but unknown" } }, { "url": "http://hl7.org/fhir/us/uds-plus/StructureDefinition/udsplus-agriculture-worker-status", "valueCode": "migratory" }, { "url": "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-housing-status-extension", "valueCode": "permanent-supportive-housing" }, { "url": "http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-veteran-status-extension", "valueBoolean": false } ], "active": true, "gender": "female", "address": [ { "postalCode": "03600" } ]}
@@ -0,0 +1,54 @@
1
+ require 'json'
2
+
3
+ module UDSPlusTestKit
4
+ class ReadAdverseEventTest < Inferno::Test
5
+ id :uds_plus_read_adverse_event_test
6
+ title 'Receive UDS+ Adverse Event Data'
7
+ description %(
8
+ Test takes from the user either: the http location of adverse event data
9
+ or the raw JSON of the data itself.
10
+ It attempts to GET the data stored at the given location if a link is provided,
11
+ then validates whether a FHIR resource can be generated from the input data.
12
+ )
13
+
14
+ input :adverse_event_data,
15
+ title: 'Adverse Event Data',
16
+ optional: true,
17
+ description: %q(
18
+ User can input the data as:
19
+ a URL link to the location of the data (ex: http://www.example.com/adverse_event_data.json)
20
+ OR a JSON string that composes the data. Leaving this blank will skip the test.
21
+ )
22
+
23
+ def data_scratch
24
+ scratch[:data_resources] ||= {}
25
+ end
26
+
27
+ def data_to_test
28
+ data_scratch['AdverseEvent'] ||= []
29
+ end
30
+
31
+ run do
32
+ omit_if !adverse_event_data.present?, "No data provided; skipping test."
33
+
34
+ # if the input is a url, else it is a json
35
+ if adverse_event_data.strip[0] != '{'
36
+ assert_valid_http_uri(adverse_event_data, "Adverse Event provided is not a valid http uri.")
37
+ get adverse_event_data
38
+ assert_response_status(200)
39
+ assert_valid_json(request.response_body, "Data received from request is not a valid JSON")
40
+ data = request.response_body
41
+ else
42
+ assert_valid_json(adverse_event_data, "JSON inputted was not in a valid format")
43
+ data = adverse_event_data
44
+ end
45
+
46
+ resource = FHIR::Json.from_json(data)
47
+ assert resource.is_a?(FHIR::Model), "Could not generate a valid resource from the input provided"
48
+
49
+ if resource.is_a?(FHIR::Model)
50
+ data_to_test << resource
51
+ end
52
+ end
53
+ end
54
+ end
@@ -0,0 +1,54 @@
1
+ require 'json'
2
+
3
+ module UDSPlusTestKit
4
+ class ReadAllergyIntoleranceTest < Inferno::Test
5
+ id :uds_plus_read_allergy_intolerance_test
6
+ title 'Receive UDS+ Allergy Intolerance Data'
7
+ description %(
8
+ Test takes from the user either: the http location of allergy intolerance data
9
+ or the raw JSON of the data itself.
10
+ It attempts to GET the data stored at the given location if a link is provided,
11
+ then validates whether a FHIR resource can be generated from the input data.
12
+ )
13
+
14
+ input :allergy_intolerance_data,
15
+ title: 'Allergy Intolerance Data',
16
+ optional: true,
17
+ description: %q(
18
+ User can input the data as:
19
+ a URL link to the location of the data (ex: http://www.example.com/allergy_intolerance_data.json)
20
+ OR a JSON string that composes the data. Leaving this blank will skip the test.
21
+ )
22
+
23
+ def data_scratch
24
+ scratch[:data_resources] ||= {}
25
+ end
26
+
27
+ def data_to_test
28
+ data_scratch['AllergyIntolerance'] ||= []
29
+ end
30
+
31
+ run do
32
+ omit_if !allergy_intolerance_data.present?, "No data provided; skipping test."
33
+
34
+ # if the input is a url, else it is a json
35
+ if allergy_intolerance_data.strip[0] != '{'
36
+ assert_valid_http_uri(allergy_intolerance_data, "Allergy Intolerance provided is not a valid http uri.")
37
+ get allergy_intolerance_data
38
+ assert_response_status(200)
39
+ assert_valid_json(request.response_body, "Data received from request is not a valid JSON")
40
+ data = request.response_body
41
+ else
42
+ assert_valid_json(allergy_intolerance_data, "JSON inputted was not in a valid format")
43
+ data = allergy_intolerance_data
44
+ end
45
+
46
+ resource = FHIR::Json.from_json(data)
47
+ assert resource.is_a?(FHIR::Model), "Could not generate a valid resource from the input provided"
48
+
49
+ if resource.is_a?(FHIR::Model)
50
+ data_to_test << resource
51
+ end
52
+ end
53
+ end
54
+ end
@@ -0,0 +1,54 @@
1
+ require 'json'
2
+
3
+ module UDSPlusTestKit
4
+ class ReadClinicalResultTest < Inferno::Test
5
+ id :uds_plus_read_clinical_result_test
6
+ title 'Receive UDS+ Clinical Result Data'
7
+ description %(
8
+ Test takes from the user either: the http location of clinical result data
9
+ or the raw JSON of the data itself.
10
+ It attempts to GET the data stored at the given location if a link is provided,
11
+ then validates whether a FHIR resource can be generated from the input data.
12
+ )
13
+
14
+ input :clinical_result_data,
15
+ title: 'Clinical Result Data',
16
+ optional: true,
17
+ description: %q(
18
+ User can input the data as:
19
+ a URL link to the location of the data (ex: http://www.example.com/clinical_result_data.json)
20
+ OR a JSON string that composes the data. Leaving this blank will skip the test.
21
+ )
22
+
23
+ def data_scratch
24
+ scratch[:data_resources] ||= {}
25
+ end
26
+
27
+ def data_to_test
28
+ data_scratch['Observation'] ||= []
29
+ end
30
+
31
+ run do
32
+ omit_if !clinical_result_data.present?, "No data provided; skipping test."
33
+
34
+ # if the input is a url, else it is a json
35
+ if clinical_result_data.strip[0] != '{'
36
+ assert_valid_http_uri(clinical_result_data, "Location provided is not a valid http uri.")
37
+ get clinical_result_data
38
+ assert_response_status(200)
39
+ assert_valid_json(request.response_body, "Data received from request is not a valid JSON")
40
+ data = request.response_body
41
+ else
42
+ assert_valid_json(clinical_result_data, "JSON inputted was not in a valid format")
43
+ data = clinical_result_data
44
+ end
45
+
46
+ resource = FHIR::Json.from_json(data)
47
+ assert resource.is_a?(FHIR::Model), "Could not generate a valid resource from the input provided"
48
+
49
+ if resource.is_a?(FHIR::Model)
50
+ data_to_test << resource
51
+ end
52
+ end
53
+ end
54
+ end
@@ -0,0 +1,54 @@
1
+ require 'json'
2
+
3
+ module UDSPlusTestKit
4
+ class ReadLocationTest < Inferno::Test
5
+ id :uds_plus_read_location_test
6
+ title 'Receive UDS+ Location Data'
7
+ description %(
8
+ Test takes from the user either: the http location of location data
9
+ or the raw JSON of the data itself.
10
+ It attempts to GET the data stored at the given location if a link is provided,
11
+ then validates whether a FHIR resource can be generated from the input data.
12
+ )
13
+
14
+ input :location_data,
15
+ title: 'Location Data',
16
+ optional: true,
17
+ description: %q(
18
+ User can input the data as:
19
+ a URL link to the location of the data (ex: http://www.example.com/location_data.json)
20
+ OR a JSON string that composes the data. Leaving this blank will skip the test.
21
+ )
22
+
23
+ def data_scratch
24
+ scratch[:data_resources] ||= {}
25
+ end
26
+
27
+ def data_to_test
28
+ data_scratch['Location'] ||= []
29
+ end
30
+
31
+ run do
32
+ omit_if !location_data.present?, "No data provided; skipping test."
33
+
34
+ # if the input is a url, else it is a json
35
+ if location_data.strip[0] != '{'
36
+ assert_valid_http_uri(location_data, "Location provided is not a valid http uri.")
37
+ get location_data
38
+ assert_response_status(200)
39
+ assert_valid_json(request.response_body, "Data received from request is not a valid JSON")
40
+ data = request.response_body
41
+ else
42
+ assert_valid_json(location_data, "JSON inputted was not in a valid format")
43
+ data = location_data
44
+ end
45
+
46
+ resource = FHIR::Json.from_json(data)
47
+ assert resource.is_a?(FHIR::Model), "Could not generate a valid resource from the input provided"
48
+
49
+ if resource.is_a?(FHIR::Model)
50
+ data_to_test << resource
51
+ end
52
+ end
53
+ end
54
+ end
@@ -29,6 +29,14 @@ require_relative './read_med_statement_test'
29
29
  require_relative '../validate_med_statement_test'
30
30
  require_relative './read_service_request_test'
31
31
  require_relative '../validate_service_request_test'
32
+ require_relative './read_location_test'
33
+ require_relative '../validate_location_test'
34
+ require_relative './read_allergy_intolerance_test'
35
+ require_relative '../validate_allergy_intolerance_test'
36
+ require_relative './read_adverse_event_test'
37
+ require_relative '../validate_adverse_event_test'
38
+ require_relative './read_clinical_result_test'
39
+ require_relative '../validate_clinical_result_test'
32
40
 
33
41
  module UDSPlusTestKit
34
42
  class UDSPlusResourceTestGroup < Inferno::TestGroup
@@ -61,19 +69,27 @@ module UDSPlusTestKit
61
69
  test from: :uds_plus_validate_related_person_test
62
70
  test from: :uds_plus_read_immunization_test
63
71
  test from: :uds_plus_validate_immunization_test
72
+ test from: :uds_plus_read_location_test
73
+ test from: :uds_plus_validate_location_test
74
+ test from: :uds_plus_read_allergy_intolerance_test
75
+ test from: :uds_plus_validate_allergy_intolerance_test
76
+ test from: :uds_plus_read_adverse_event_test
77
+ test from: :uds_plus_validate_adverse_event_test
64
78
  test from: :uds_plus_read_income_test
65
79
  test from: :uds_plus_validate_income_test
66
80
  test from: :uds_plus_read_sexual_orientation_test
67
81
  test from: :uds_plus_validate_sexual_orientation_test
68
82
  test from: :uds_plus_read_lab_test
69
83
  test from: :uds_plus_validate_lab_test
84
+ test from: :uds_plus_read_clinical_result_test
85
+ test from: :uds_plus_validate_clinical_result_test
70
86
  test from: :uds_plus_read_special_observation_test
87
+ test from: :uds_plus_validate_special_observation_test
71
88
  test from: :uds_plus_read_medication_request_test
72
89
  test from: :uds_plus_validate_medication_request_test
73
90
  test from: :uds_plus_read_medication_statement_test
74
91
  test from: :uds_plus_validate_medication_statement_test
75
92
  test from: :uds_plus_read_service_request_test
76
93
  test from: :uds_plus_validate_service_request_test
77
- test from: :uds_plus_validate_special_observation_test
78
94
  end
79
95
  end
@@ -20,7 +20,8 @@ module UDSPlusTestKit
20
20
  'Observation', 'Patient', 'Procedure',
21
21
  'RelatedPerson', 'Immunization',
22
22
  'ServiceRequest', 'MedicationRequest',
23
- 'MedicationStatement'
23
+ 'MedicationStatement', 'Location',
24
+ 'AdverseEvent', 'AllergyIntolerance'
24
25
  ]
25
26
  end
26
27
 
@@ -17,6 +17,10 @@ require_relative '../validate_lab_test'
17
17
  require_relative '../validate_med_request_test'
18
18
  require_relative '../validate_med_statement_test'
19
19
  require_relative '../validate_service_request_test'
20
+ require_relative '../validate_location_test'
21
+ require_relative '../validate_allergy_intolerance_test'
22
+ require_relative '../validate_adverse_event_test'
23
+ require_relative '../validate_clinical_result_test'
20
24
 
21
25
  module UDSPlusTestKit
22
26
  class UDSPlusTestGroup < Inferno::TestGroup
@@ -41,9 +45,13 @@ module UDSPlusTestKit
41
45
  test from: :uds_plus_validate_procedure_test
42
46
  test from: :uds_plus_validate_related_person_test
43
47
  test from: :uds_plus_validate_immunization_test
48
+ test from: :uds_plus_validate_location_test
49
+ test from: :uds_plus_validate_allergy_intolerance_test
50
+ test from: :uds_plus_validate_adverse_event_test
44
51
  test from: :uds_plus_validate_income_test
45
52
  test from: :uds_plus_validate_sexual_orientation_test
46
53
  test from: :uds_plus_validate_lab_test
54
+ test from: :uds_plus_validate_clinical_result_test
47
55
  test from: :uds_plus_validate_special_observation_test
48
56
  test from: :uds_plus_validate_medication_request_test
49
57
  test from: :uds_plus_validate_medication_statement_test
@@ -22,6 +22,10 @@ require_relative '../validate_lab_test'
22
22
  require_relative '../validate_med_request_test'
23
23
  require_relative '../validate_med_statement_test'
24
24
  require_relative '../validate_service_request_test'
25
+ require_relative '../validate_location_test'
26
+ require_relative '../validate_allergy_intolerance_test'
27
+ require_relative '../validate_adverse_event_test'
28
+ require_relative '../validate_clinical_result_test'
25
29
 
26
30
  module UDSPlusTestKit
27
31
  class UDSPlusPostGroup < Inferno::TestGroup
@@ -47,9 +51,13 @@ module UDSPlusTestKit
47
51
  test from: :uds_plus_validate_procedure_test
48
52
  test from: :uds_plus_validate_related_person_test
49
53
  test from: :uds_plus_validate_immunization_test
54
+ test from: :uds_plus_validate_location_test
55
+ test from: :uds_plus_validate_allergy_intolerance_test
56
+ test from: :uds_plus_validate_adverse_event_test
50
57
  test from: :uds_plus_validate_income_test
51
58
  test from: :uds_plus_validate_sexual_orientation_test
52
59
  test from: :uds_plus_validate_lab_test
60
+ test from: :uds_plus_validate_clinical_result_test
53
61
  test from: :uds_plus_validate_special_observation_test
54
62
  test from: :uds_plus_validate_medication_request_test
55
63
  test from: :uds_plus_validate_medication_statement_test
@@ -9,7 +9,7 @@ module UDSPlusTestKit
9
9
  title 'UDS+ Test Kit'
10
10
  description %(
11
11
  The UDS+ Test Kit tests systems for their conformance to the [UDS+
12
- Implementation Guide](http://fhir.drajer.com/index.html#uds-plus-home-page).
12
+ Implementation Guide v1.0.0](http://udsplus.drajer.com).
13
13
  The included tests function as a rudimentary data receiver. This receiver will
14
14
  take a provided Import Manifest, either as an HTTP location or as a raw json,
15
15
  and validate its contents. This includes validating the structure of the manifest,
@@ -78,8 +78,8 @@ module UDSPlusTestKit
78
78
  url: 'https://github.com/inferno-framework/uds-plus-test-kit/'
79
79
  },
80
80
  {
81
- label: 'UDS+ Implementation Guide',
82
- url: 'http://fhir.drajer.com/index.html#uds-plus-home-page'
81
+ label: 'UDS+ Implementation Guide v1.0.0',
82
+ url: 'http://udsplus.drajer.com'
83
83
  }
84
84
  ]
85
85
 
@@ -0,0 +1,33 @@
1
+ require 'json'
2
+ require_relative './version'
3
+
4
+ module UDSPlusTestKit
5
+ class ValidateAdverseEventTest < Inferno::Test
6
+ id :uds_plus_validate_adverse_event_test
7
+ title 'Validate UDS+ Adverse Event Data'
8
+ description %(
9
+ Test takes the Adverse Event resources identified
10
+ by the import manifest, and validates whether they conform
11
+ to their UDS+ Structure Definitions.
12
+ )
13
+
14
+ def data_scratch
15
+ scratch[:data_resources] ||= {}
16
+ end
17
+
18
+ def data_to_test
19
+ data_scratch['AdverseEvent'] ||= []
20
+ end
21
+
22
+ run do
23
+ omit_if data_to_test.empty?, "No data of this type was identified."
24
+
25
+ profile_definition = 'http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-adverseevent'
26
+ profile_with_version = "#{profile_definition}|#{UDS_PLUS_VERSION}"
27
+
28
+ data_to_test.each do |resource|
29
+ assert_valid_resource(resource: resource, profile_url: profile_with_version)
30
+ end
31
+ end
32
+ end
33
+ end
@@ -0,0 +1,33 @@
1
+ require 'json'
2
+ require_relative './version'
3
+
4
+ module UDSPlusTestKit
5
+ class ValidateAllergyIntoleranceTest < Inferno::Test
6
+ id :uds_plus_validate_allergy_intolerance_test
7
+ title 'Validate UDS+ Allergy Intolerance Data'
8
+ description %(
9
+ Test takes the Allergy Intolerance resources identified
10
+ by the import manifest, and validates whether they conform
11
+ to their UDS+ Structure Definitions.
12
+ )
13
+
14
+ def data_scratch
15
+ scratch[:data_resources] ||= {}
16
+ end
17
+
18
+ def data_to_test
19
+ data_scratch['AllergyIntolerance'] ||= []
20
+ end
21
+
22
+ run do
23
+ omit_if data_to_test.empty?, "No data of this type was identified."
24
+
25
+ profile_definition = 'http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-allergyintolerance'
26
+ profile_with_version = "#{profile_definition}|#{UDS_PLUS_VERSION}"
27
+
28
+ data_to_test.each do |resource|
29
+ assert_valid_resource(resource: resource, profile_url: profile_with_version)
30
+ end
31
+ end
32
+ end
33
+ end
@@ -0,0 +1,65 @@
1
+ require 'json'
2
+ require_relative './version'
3
+
4
+ module UDSPlusTestKit
5
+ class ValidateClinicalResultTest < Inferno::Test
6
+ id :uds_plus_validate_clinical_result_test
7
+ title 'Validate UDS+ Clinical Result Data'
8
+ description %(
9
+ Test takes the Clinical Result resources identified
10
+ by the import manifest, and validates whether they conform
11
+ to their UDS+ Structure Definitions.
12
+ )
13
+
14
+ def data_scratch
15
+ scratch[:data_resources] ||= {}
16
+ end
17
+
18
+ def data_to_test
19
+ data_scratch['Observation'] ||= []
20
+ end
21
+
22
+ run do
23
+ omit_if data_to_test.empty?, "No data of this type was identified."
24
+
25
+ profile_definition = 'http://hl7.org/fhir/us/uds-plus/StructureDefinition/de-identified-uds-plus-clinical-result-observation'
26
+ profile_with_version = "#{profile_definition}|#{UDS_PLUS_VERSION}"
27
+
28
+ no_resource_of_this_type = true
29
+ identifier_fail_message = %(Resource.meta.profile should contain the HTTP location of the
30
+ resource's Structure Definition. Resource.meta.profile either does
31
+ not exist in this resource, or its contents do not point to a valid
32
+ location for type Observation. **NOTE:**
33
+ If this error occurs, it can trigger a fail for all observation-type tests,
34
+ regardless of whether both tests were meant to run.)
35
+
36
+ data_to_test.each do |resource|
37
+ # All these assertions are to differentaite Observation data between orientation types.
38
+ # A resource is skipped if it cannot be identified as an clinical result resource.
39
+ type_identifier = resource.to_hash
40
+ assert type_identifier['meta'].present?, identifier_fail_message
41
+
42
+ type_identifier = type_identifier['meta']
43
+ assert type_identifier.is_a?(Hash), identifier_fail_message
44
+ assert type_identifier['profile'].present?, identifier_fail_message
45
+
46
+ type_identifier = type_identifier['profile']
47
+ assert type_identifier.is_a?(Array), identifier_fail_message
48
+ assert !type_identifier.empty?, identifier_fail_message
49
+
50
+
51
+ type_identifier = type_identifier.first
52
+ assert type_identifier.is_a?(String), identifier_fail_message
53
+ if !type_identifier.include?("clinical-result")
54
+ next
55
+ end
56
+
57
+ no_resource_of_this_type = false
58
+
59
+ assert_valid_resource(resource: resource, profile_url: profile_with_version)
60
+ end
61
+
62
+ omit_if no_resource_of_this_type, "No data of this type was identified."
63
+ end
64
+ end
65
+ end
@@ -0,0 +1,33 @@
1
+ require 'json'
2
+ require_relative './version'
3
+
4
+ module UDSPlusTestKit
5
+ class ValidateLocationTest < Inferno::Test
6
+ id :uds_plus_validate_location_test
7
+ title 'Validate UDS+ Location Data'
8
+ description %(
9
+ Test takes the Location resources identified
10
+ by the import manifest, and validates whether they conform
11
+ to their UDS+ Structure Definitions.
12
+ )
13
+
14
+ def data_scratch
15
+ scratch[:data_resources] ||= {}
16
+ end
17
+
18
+ def data_to_test
19
+ data_scratch['Location'] ||= []
20
+ end
21
+
22
+ run do
23
+ omit_if data_to_test.empty?, "No data of this type was identified."
24
+
25
+ profile_definition = 'http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-location'
26
+ profile_with_version = "#{profile_definition}|#{UDS_PLUS_VERSION}"
27
+
28
+ data_to_test.each do |resource|
29
+ assert_valid_resource(resource: resource, profile_url: profile_with_version)
30
+ end
31
+ end
32
+ end
33
+ end
@@ -48,7 +48,14 @@ module UDSPlusTestKit
48
48
 
49
49
  type_identifier = type_identifier.first
50
50
  assert type_identifier.is_a?(String), identifier_fail_message
51
- if type_identifier.include?("income") || type_identifier.include?("sexual-orientation") || type_identifier.include?("-lab-")
51
+
52
+ known_observations = ["income", "sexual-orientation", "-lab-", "clinical-result"]
53
+ is_known_observation = false
54
+ known_observations.each do |cur|
55
+ is_known_observation = (is_known_observation || type_identifier.include?(cur))
56
+ end
57
+
58
+ if is_known_observation
52
59
  next
53
60
  else
54
61
  assert type_identifier.downcase.include?("observation"), identifier_fail_message
@@ -1,6 +1,6 @@
1
1
  # frozen_string_literal: true
2
2
 
3
3
  module UDSPlusTestKit
4
- VERSION = '1.0.2'
5
- UDS_PLUS_VERSION = '0.4.1' #'1.0.0'
4
+ VERSION = '1.0.4'
5
+ UDS_PLUS_VERSION = '1.0.0'
6
6
  end
metadata CHANGED
@@ -1,14 +1,14 @@
1
1
  --- !ruby/object:Gem::Specification
2
2
  name: uds_plus_test_kit
3
3
  version: !ruby/object:Gem::Version
4
- version: 1.0.2
4
+ version: 1.0.4
5
5
  platform: ruby
6
6
  authors:
7
7
  - Leap Orbit
8
8
  autorequire:
9
9
  bindir: bin
10
10
  cert_chain: []
11
- date: 2023-07-20 00:00:00.000000000 Z
11
+ date: 2023-09-08 00:00:00.000000000 Z
12
12
  dependencies:
13
13
  - !ruby/object:Gem::Dependency
14
14
  name: inferno_core
@@ -97,12 +97,16 @@ files:
97
97
  - lib/uds_plus_test_kit/examples/manifest.json
98
98
  - lib/uds_plus_test_kit/examples/observation.ndjson
99
99
  - lib/uds_plus_test_kit/examples/patient.ndjson
100
+ - lib/uds_plus_test_kit/input_resource_tests/read_adverse_event_test.rb
101
+ - lib/uds_plus_test_kit/input_resource_tests/read_allergy_intolerance_test.rb
102
+ - lib/uds_plus_test_kit/input_resource_tests/read_clinical_result_test.rb
100
103
  - lib/uds_plus_test_kit/input_resource_tests/read_coverage_test.rb
101
104
  - lib/uds_plus_test_kit/input_resource_tests/read_diagnosis_test.rb
102
105
  - lib/uds_plus_test_kit/input_resource_tests/read_encounter_test.rb
103
106
  - lib/uds_plus_test_kit/input_resource_tests/read_immunization_test.rb
104
107
  - lib/uds_plus_test_kit/input_resource_tests/read_income_test.rb
105
108
  - lib/uds_plus_test_kit/input_resource_tests/read_lab_test.rb
109
+ - lib/uds_plus_test_kit/input_resource_tests/read_location_test.rb
106
110
  - lib/uds_plus_test_kit/input_resource_tests/read_manifest_ind_test.rb
107
111
  - lib/uds_plus_test_kit/input_resource_tests/read_med_request_test.rb
108
112
  - lib/uds_plus_test_kit/input_resource_tests/read_med_statement_test.rb
@@ -122,12 +126,16 @@ files:
122
126
  - lib/uds_plus_test_kit/post_tests/post_manifest_test.rb
123
127
  - lib/uds_plus_test_kit/post_tests/read_post_test.rb
124
128
  - lib/uds_plus_test_kit/uds_plus_test_suite.rb
129
+ - lib/uds_plus_test_kit/validate_adverse_event_test.rb
130
+ - lib/uds_plus_test_kit/validate_allergy_intolerance_test.rb
131
+ - lib/uds_plus_test_kit/validate_clinical_result_test.rb
125
132
  - lib/uds_plus_test_kit/validate_coverage_test.rb
126
133
  - lib/uds_plus_test_kit/validate_diagnosis_test.rb
127
134
  - lib/uds_plus_test_kit/validate_encounter_test.rb
128
135
  - lib/uds_plus_test_kit/validate_immunization_test.rb
129
136
  - lib/uds_plus_test_kit/validate_income_test.rb
130
137
  - lib/uds_plus_test_kit/validate_lab_test.rb
138
+ - lib/uds_plus_test_kit/validate_location_test.rb
131
139
  - lib/uds_plus_test_kit/validate_med_request_test.rb
132
140
  - lib/uds_plus_test_kit/validate_med_statement_test.rb
133
141
  - lib/uds_plus_test_kit/validate_patient_test.rb