uds_plus_test_kit 0.9.0

data/lib/uds_plus_test_kit/igs/package/other/validation-oo.json

@@ -0,0 +1 @@
+{"resourceType":"Bundle","type":"collection","timestamp":"2023-04-05T12:57:50.562-04:00","entry":[{"fullUrl":"http://hl7.org/fhir/us/uds-plus/OperationOutcome/ImplementationGuide-udsplus","resource":{"resourceType":"OperationOutcome","id":"ImplementationGuide-udsplus"}},{"fullUrl":"http://hl7.org/fhir/us/uds-plus/OperationOutcome/Patient-de-identified-example","resource":{"resourceType":"OperationOutcome","id":"Patient-de-identified-example","issue":[{"extension":[{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line","valueInteger":1},{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col","valueInteger":2},{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source","valueCode":"InstanceValidator"},{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-message-id","valueCode":"Validation_VAL_Profile_Maximum"}],"severity":"error","code":"structure","details":{"text":"Patient.text: max allowed = 0, but found 1 (from http://hl7.org/fhir/us/uds-plus/StructureDefinition/de-identified-uds-plus-patient|0.3.0)"},"expression":["Patient/de-identified-example: Patient"]}]}},{"fullUrl":"http://hl7.org/fhir/us/uds-plus/OperationOutcome/Condition-example","resource":{"resourceType":"OperationOutcome","id":"Condition-example"}},{"fullUrl":"http://hl7.org/fhir/us/uds-plus/OperationOutcome/Encounter-example","resource":{"resourceType":"OperationOutcome","id":"Encounter-example","issue":[{"extension":[{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line","valueInteger":31},{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col","valueInteger":6},{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source","valueCode":"TerminologyEngine"},{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-message-id","valueCode":"[Unable to determine whether the provided codes are in the value set http://hl7.org/fhir/us/core/ValueSet/us-core-encounter-type because the value set or a code system it depends on is not known to the validator, Code System URI 'http://www.ama-assn.org/go/cpt' is unknown so the code cannot be validated]"}],"severity":"warning","code":"code-invalid","details":{"text":"[Unable to determine whether the provided codes are in the value set http://hl7.org/fhir/us/core/ValueSet/us-core-encounter-type because the value set or a code system it depends on is not known to the validator, Code System URI 'http://www.ama-assn.org/go/cpt' is unknown so the code cannot be validated]"},"expression":["Encounter/example: Encounter.type[0]"]},{"extension":[{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line","valueInteger":50},{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col","valueInteger":6},{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source","valueCode":"TerminologyEngine"},{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-message-id","valueCode":"[Unable to determine whether the provided codes are in the value set http://hl7.org/fhir/us/core/ValueSet/us-core-discharge-disposition because the value set or a code system it depends on is not known to the validator, Code System URI 'http://www.nubc.org/patient-discharge' is unknown so the code cannot be validated]"}],"severity":"warning","code":"code-invalid","details":{"text":"[Unable to determine whether the provided codes are in the value set http://hl7.org/fhir/us/core/ValueSet/us-core-discharge-disposition because the value set or a code system it depends on is not known to the validator, Code System URI 'http://www.nubc.org/patient-discharge' is unknown so the code cannot be validated]"},"expression":["Encounter/example: Encounter.hospitalization.dischargeDisposition"]}]}},{"fullUrl":"http://hl7.org/fhir/us/uds-plus/OperationOutcome/Patient-smallpop-example","resource":{"resourceType":"OperationOutcome","id":"Patient-smallpop-example"}},{"fullUrl":"http://hl7.org/fhir/us/uds-plus/OperationOutcome/Condition-de-identified-example","resource":{"resourceType":"OperationOutcome","id":"Condition-de-identified-example","issue":[{"extension":[{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line","valueInteger":1},{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col","valueInteger":2},{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source","valueCode":"InstanceValidator"},{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-message-id","valueCode":"Validation_VAL_Profile_Maximum"}],"severity":"error","code":"structure","details":{"text":"Condition.text: max allowed = 0, but found 1 (from http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-diagnosis|0.3.0)"},"expression":["Condition/de-identified-example: Condition"]}]}},{"fullUrl":"http://hl7.org/fhir/us/uds-plus/OperationOutcome/Patient-example","resource":{"resourceType":"OperationOutcome","id":"Patient-example"}},{"fullUrl":"http://hl7.org/fhir/us/uds-plus/OperationOutcome/Parameters-example","resource":{"resourceType":"OperationOutcome","id":"Parameters-example"}},{"fullUrl":"http://hl7.org/fhir/us/uds-plus/OperationOutcome/Encounter-de-identified-example","resource":{"resourceType":"OperationOutcome","id":"Encounter-de-identified-example","issue":[{"extension":[{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line","valueInteger":1},{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col","valueInteger":2},{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source","valueCode":"InstanceValidator"},{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-message-id","valueCode":"Validation_VAL_Profile_Minimum"}],"severity":"error","code":"structure","details":{"text":"Encounter.extension:uds-plus-age-extension: minimum required = 1, but only found 0 (from http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-encounter|0.3.0)"},"expression":["Encounter/de-identified-example: Encounter"]},{"extension":[{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line","valueInteger":27},{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col","valueInteger":6},{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source","valueCode":"TerminologyEngine"},{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-message-id","valueCode":"[Unable to determine whether the provided codes are in the value set http://hl7.org/fhir/us/core/ValueSet/us-core-encounter-type because the value set or a code system it depends on is not known to the validator, Code System URI 'http://www.ama-assn.org/go/cpt' is unknown so the code cannot be validated]"}],"severity":"warning","code":"code-invalid","details":{"text":"[Unable to determine whether the provided codes are in the value set http://hl7.org/fhir/us/core/ValueSet/us-core-encounter-type because the value set or a code system it depends on is not known to the validator, Code System URI 'http://www.ama-assn.org/go/cpt' is unknown so the code cannot be validated]"},"expression":["Encounter/de-identified-example: Encounter.type[0]"]}]}},{"fullUrl":"http://hl7.org/fhir/us/uds-plus/OperationOutcome/Patient-de-identified-smallpop-example","resource":{"resourceType":"OperationOutcome","id":"Patient-de-identified-smallpop-example","issue":[{"extension":[{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line","valueInteger":1},{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col","valueInteger":2},{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source","valueCode":"InstanceValidator"},{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-message-id","valueCode":"Validation_VAL_Profile_Maximum"}],"severity":"error","code":"structure","details":{"text":"Patient.text: max allowed = 0, but found 1 (from http://hl7.org/fhir/us/uds-plus/StructureDefinition/de-identified-uds-plus-patient|0.3.0)"},"expression":["Patient/de-identified-smallpop-example: Patient"]}]}},{"fullUrl":"http://hl7.org/fhir/us/uds-plus/OperationOutcome/CodeSystem-udsplus-housing-status-codes","resource":{"resourceType":"OperationOutcome","id":"CodeSystem-udsplus-housing-status-codes","issue":[{"extension":[{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line","valueInteger":1},{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col","valueInteger":2993},{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source","valueCode":"InstanceValidator"},{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-message-id","valueCode":"TYPE_SPECIFIC_CHECKS_DT_CANONICAL_RESOLVE"}],"severity":"error","code":"structure","details":{"text":"Canonical URL 'http://hl7.org/fhir/us/uds-plus/ValueSet/udsplus-housing-status' does not resolve"},"expression":["CodeSystem/udsplus-housing-status-codes: CodeSystem.valueSet"]}]}},{"fullUrl":"http://hl7.org/fhir/us/uds-plus/OperationOutcome/StructureDefinition-uds-plus-diagnosis","resource":{"resourceType":"OperationOutcome","id":"StructureDefinition-uds-plus-diagnosis"}},{"fullUrl":"http://hl7.org/fhir/us/uds-plus/OperationOutcome/StructureDefinition-uds-plus-age-extension","resource":{"resourceType":"OperationOutcome","id":"StructureDefinition-uds-plus-age-extension"}},{"fullUrl":"http://hl7.org/fhir/us/uds-plus/OperationOutcome/CapabilityStatement-uds-plus-data-submitter-client","resource":{"resourceType":"OperationOutcome","id":"CapabilityStatement-uds-plus-data-submitter-client"}},{"fullUrl":"http://hl7.org/fhir/us/uds-plus/OperationOutcome/StructureDefinition-uds-plus-sexual-orientation-observation","resource":{"resourceType":"OperationOutcome","id":"StructureDefinition-uds-plus-sexual-orientation-observation","issue":[{"extension":[{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source","valueCode":"InstanceValidator"}],"severity":"error","code":"business-rule","details":{"text":"The target profile http://hl7.org/fhir/us/uds-plus/StructureDefinition/de-identified-uds-plus-patient is not a valid constraint on the base ([CanonicalType[http://hl7.org/fhir/us/core/StructureDefinition/us-core-patient]]) at Observation.subject"},"expression":["StructureDefinition/uds-plus-sexual-orientation-observation: StructureDefinition"]},{"extension":[{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source","valueCode":"Publisher"}],"severity":"warning","code":"business-rule","details":{"text":"The Implementation Guide contains no examples for this profile"},"expression":["StructureDefinition.where(url = 'http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-sexual-orientation-observation')"]}]}},{"fullUrl":"http://hl7.org/fhir/us/uds-plus/OperationOutcome/CodeSystem-udsplus-insurance-codes","resource":{"resourceType":"OperationOutcome","id":"CodeSystem-udsplus-insurance-codes","issue":[{"extension":[{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line","valueInteger":1},{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col","valueInteger":2520},{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source","valueCode":"InstanceValidator"},{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-message-id","valueCode":"TYPE_SPECIFIC_CHECKS_DT_CANONICAL_RESOLVE"}],"severity":"error","code":"structure","details":{"text":"Canonical URL 'http://hl7.org/fhir/us/uds-plus/ValueSet/udsplus-insurance' does not resolve"},"expression":["CodeSystem/udsplus-insurance-codes: CodeSystem.valueSet"]}]}},{"fullUrl":"http://hl7.org/fhir/us/uds-plus/OperationOutcome/StructureDefinition-uds-plus-income-observation","resource":{"resourceType":"OperationOutcome","id":"StructureDefinition-uds-plus-income-observation","issue":[{"extension":[{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source","valueCode":"Publisher"}],"severity":"warning","code":"business-rule","details":{"text":"The Implementation Guide contains no examples for this profile"},"expression":["StructureDefinition.where(url = 'http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-income-observation')"]}]}},{"fullUrl":"http://hl7.org/fhir/us/uds-plus/OperationOutcome/CapabilityStatement-uds-plus-data-source","resource":{"resourceType":"OperationOutcome","id":"CapabilityStatement-uds-plus-data-source"}},{"fullUrl":"http://hl7.org/fhir/us/uds-plus/OperationOutcome/StructureDefinition-uds-plus-deidentify-data","resource":{"resourceType":"OperationOutcome","id":"StructureDefinition-uds-plus-deidentify-data","issue":[{"extension":[{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source","valueCode":"Publisher"}],"severity":"warning","code":"business-rule","details":{"text":"The Implementation Guide contains no examples for this profile"},"expression":["StructureDefinition.where(url = 'http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-deidentify-data')"]}]}},{"fullUrl":"http://hl7.org/fhir/us/uds-plus/OperationOutcome/StructureDefinition-uds-plus-import-manifest","resource":{"resourceType":"OperationOutcome","id":"StructureDefinition-uds-plus-import-manifest"}},{"fullUrl":"http://hl7.org/fhir/us/uds-plus/OperationOutcome/OperationDefinition-udsplus-de-identify","resource":{"resourceType":"OperationOutcome","id":"OperationDefinition-udsplus-de-identify"}},{"fullUrl":"http://hl7.org/fhir/us/uds-plus/OperationOutcome/StructureDefinition-udsplus-agriculture-worker-status","resource":{"resourceType":"OperationOutcome","id":"StructureDefinition-udsplus-agriculture-worker-status","issue":[{"extension":[{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line","valueInteger":1},{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col","valueInteger":12720},{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source","valueCode":"InstanceValidator"},{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-message-id","valueCode":"Type_Specific_Checks_DT_URL_Resolve"}],"severity":"error","code":"structure","details":{"text":"URL value 'http://hl7.org/fhir/us/uds-plus/StructureDefinition/udsplus-agriculture-worker-status-extension' does not resolve"},"expression":["StructureDefinition/udsplus-agriculture-worker-status: StructureDefinition.snapshot.element[3].fixed.ofType(uri)"]},{"extension":[{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line","valueInteger":1},{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col","valueInteger":13892},{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source","valueCode":"InstanceValidator"},{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-message-id","valueCode":"Type_Specific_Checks_DT_URL_Resolve"}],"severity":"error","code":"structure","details":{"text":"URL value 'http://hl7.org/fhir/us/uds-plus/StructureDefinition/udsplus-agriculture-worker-status-extension' does not resolve"},"expression":["StructureDefinition/udsplus-agriculture-worker-status: StructureDefinition.differential.element[1].fixed.ofType(uri)"]},{"extension":[{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source","valueCode":"Publisher"}],"severity":"warning","code":"business-rule","details":{"text":"The Implementation Guide contains no examples for this extension"},"expression":["StructureDefinition.where(url = 'http://hl7.org/fhir/us/uds-plus/StructureDefinition/udsplus-agriculture-worker-status')"]}]}},{"fullUrl":"http://hl7.org/fhir/us/uds-plus/OperationOutcome/CapabilityStatement-uds-plus-trust-service-provider","resource":{"resourceType":"OperationOutcome","id":"CapabilityStatement-uds-plus-trust-service-provider"}},{"fullUrl":"http://hl7.org/fhir/us/uds-plus/OperationOutcome/CapabilityStatement-uds-plus-data-receiver-server","resource":{"resourceType":"OperationOutcome","id":"CapabilityStatement-uds-plus-data-receiver-server"}},{"fullUrl":"http://hl7.org/fhir/us/uds-plus/OperationOutcome/StructureDefinition-uds-plus-procedure","resource":{"resourceType":"OperationOutcome","id":"StructureDefinition-uds-plus-procedure","issue":[{"extension":[{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source","valueCode":"ProfileValidator"}],"severity":"error","code":"structure","details":{"text":"The diff list size changed when sorting - was 5 is now 1"},"expression":["StructureDefinition.where(url = 'http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-procedure')"]},{"extension":[{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source","valueCode":"ProfileValidator"}],"severity":"error","code":"structure","details":{"text":"Sort failed: counts differ; at least one of the paths in the differential is illegal"},"expression":["StructureDefinition.where(url = 'http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-procedure')"]},{"extension":[{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source","valueCode":"Publisher"}],"severity":"warning","code":"business-rule","details":{"text":"The Implementation Guide contains no examples for this profile"},"expression":["StructureDefinition.where(url = 'http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-procedure')"]}]}},{"fullUrl":"http://hl7.org/fhir/us/uds-plus/OperationOutcome/StructureDefinition-de-identified-uds-plus-patient","resource":{"resourceType":"OperationOutcome","id":"StructureDefinition-de-identified-uds-plus-patient"}},{"fullUrl":"http://hl7.org/fhir/us/uds-plus/OperationOutcome/StructureDefinition-uds-plus-agriculture-worker-status-extension","resource":{"resourceType":"OperationOutcome","id":"StructureDefinition-uds-plus-agriculture-worker-status-extension","issue":[{"extension":[{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source","valueCode":"Publisher"}],"severity":"warning","code":"business-rule","details":{"text":"The Implementation Guide contains no examples for this extension"},"expression":["StructureDefinition.where(url = 'http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-agriculture-worker-status-extension')"]}]}},{"fullUrl":"http://hl7.org/fhir/us/uds-plus/OperationOutcome/StructureDefinition-uds-plus-encounter","resource":{"resourceType":"OperationOutcome","id":"StructureDefinition-uds-plus-encounter"}},{"fullUrl":"http://hl7.org/fhir/us/uds-plus/OperationOutcome/OperationDefinition-import","resource":{"resourceType":"OperationOutcome","id":"OperationDefinition-import"}},{"fullUrl":"http://hl7.org/fhir/us/uds-plus/OperationOutcome/StructureDefinition-uds-plus-housing-status-extension","resource":{"resourceType":"OperationOutcome","id":"StructureDefinition-uds-plus-housing-status-extension","issue":[{"extension":[{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source","valueCode":"Publisher"}],"severity":"warning","code":"business-rule","details":{"text":"The Implementation Guide contains no examples for this extension"},"expression":["StructureDefinition.where(url = 'http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-housing-status-extension')"]}]}},{"fullUrl":"http://hl7.org/fhir/us/uds-plus/OperationOutcome/CodeSystem-udsplus-agriculture-worker-status-codes","resource":{"resourceType":"OperationOutcome","id":"CodeSystem-udsplus-agriculture-worker-status-codes","issue":[{"extension":[{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line","valueInteger":1},{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col","valueInteger":2237},{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source","valueCode":"InstanceValidator"},{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-message-id","valueCode":"TYPE_SPECIFIC_CHECKS_DT_CANONICAL_RESOLVE"}],"severity":"error","code":"structure","details":{"text":"Canonical URL 'http://hl7.org/fhir/us/uds-plus/ValueSet/udsplus-agriculture-worker-status' does not resolve"},"expression":["CodeSystem/udsplus-agriculture-worker-status-codes: CodeSystem.valueSet"]}]}},{"fullUrl":"http://hl7.org/fhir/us/uds-plus/OperationOutcome/StructureDefinition-uds-plus-coverage","resource":{"resourceType":"OperationOutcome","id":"StructureDefinition-uds-plus-coverage","issue":[{"extension":[{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source","valueCode":"InstanceValidator"}],"severity":"warning","code":"business-rule","details":{"text":"The valueSet reference https://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.114222.4.11.3591 on element Coverage.type could not be resolved"},"expression":["StructureDefinition/uds-plus-coverage: StructureDefinition.snapshot.element[11].binding"]},{"extension":[{"url":"http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source","valueCode":"Publisher"}],"severity":"warning","code":"business-rule","details":{"text":"The Implementation Guide contains no examples for this profile"},"expression":["StructureDefinition.where(url = 'http://hl7.org/fhir/us/uds-plus/StructureDefinition/uds-plus-coverage')"]}]}}]}

data/lib/uds_plus_test_kit/igs/package/other/validation-summary.json

@@ -0,0 +1 @@
+{"ImplementationGuide/udsplus":{"errors":0,"warnings":0},"Patient/de-identified-example":{"errors":1,"warnings":0},"Condition/example":{"errors":0,"warnings":0},"Encounter/example":{"errors":0,"warnings":2},"Patient/smallpop-example":{"errors":0,"warnings":0},"Condition/de-identified-example":{"errors":1,"warnings":0},"Patient/example":{"errors":0,"warnings":0},"Parameters/example":{"errors":0,"warnings":0},"Encounter/de-identified-example":{"errors":1,"warnings":1},"Patient/de-identified-smallpop-example":{"errors":1,"warnings":0},"CodeSystem/udsplus-housing-status-codes":{"errors":1,"warnings":0},"StructureDefinition/uds-plus-diagnosis":{"errors":0,"warnings":0},"StructureDefinition/uds-plus-age-extension":{"errors":0,"warnings":0},"CapabilityStatement/uds-plus-data-submitter-client":{"errors":0,"warnings":0},"StructureDefinition/uds-plus-sexual-orientation-observation":{"errors":1,"warnings":1},"CodeSystem/udsplus-insurance-codes":{"errors":1,"warnings":0},"StructureDefinition/uds-plus-income-observation":{"errors":0,"warnings":1},"CapabilityStatement/uds-plus-data-source":{"errors":0,"warnings":0},"StructureDefinition/uds-plus-deidentify-data":{"errors":0,"warnings":1},"StructureDefinition/uds-plus-import-manifest":{"errors":0,"warnings":0},"OperationDefinition/udsplus-de-identify":{"errors":0,"warnings":0},"StructureDefinition/udsplus-agriculture-worker-status":{"errors":2,"warnings":1},"CapabilityStatement/uds-plus-trust-service-provider":{"errors":0,"warnings":0},"CapabilityStatement/uds-plus-data-receiver-server":{"errors":0,"warnings":0},"StructureDefinition/uds-plus-procedure":{"errors":2,"warnings":1},"StructureDefinition/de-identified-uds-plus-patient":{"errors":0,"warnings":0},"StructureDefinition/uds-plus-agriculture-worker-status-extension":{"errors":0,"warnings":1},"StructureDefinition/uds-plus-encounter":{"errors":0,"warnings":0},"OperationDefinition/import":{"errors":0,"warnings":0},"StructureDefinition/uds-plus-housing-status-extension":{"errors":0,"warnings":1},"CodeSystem/udsplus-agriculture-worker-status-codes":{"errors":1,"warnings":0},"StructureDefinition/uds-plus-coverage":{"errors":0,"warnings":2}}

data/lib/uds_plus_test_kit/igs/package/package.json

@@ -0,0 +1,27 @@
+{
+  "name" : "fhir.us.udsplus",
+  "version" : "0.3.0",
+  "tools-version" : 3,
+  "type" : "IG",
+  "date" : "20230405125624",
+  "license" : "CC0-1.0",
+  "canonical" : "http://hl7.org/fhir/us/uds-plus",
+  "notForPublication" : true,
+  "url" : "file:///Users/nbashyam/git/uds-plus/output",
+  "title" : "Uniform Data System (UDS) Patient Level Submission (PLS) - UDS+ IG",
+  "description" : "A brief description of what udsplus is about (probably the same text as in your readme) (built Wed, Apr 5, 2023 12:56-0400-04:00)",
+  "fhirVersions" : ["4.0.1"],
+  "dependencies" : {
+    "hl7.fhir.r4.core" : "4.0.1",
+    "hl7.terminology.r4" : "5.0.0",
+    "hl7.fhir.us.core" : "5.0.1",
+    "hl7.fhir.uv.bulkdata" : "1.0.1",
+    "hl7.fhir.uv.smart-app-launch" : "2.0.0",
+    "hl7.fhir.us.davinci-deqm" : "3.0.0"
+  },
+  "author" : "HRSA UDS PLS Project",
+  "directories" : {
+    "lib" : "package",
+    "example" : "example"
+  }
+}

data/lib/uds_plus_test_kit/input_resource_tests/read_coverage_test.rb

@@ -0,0 +1,54 @@
+require 'json'
+
+module UDSPlusTestKit
+    class ReadCoverageTest < Inferno::Test
+        id :uds_plus_read_coverage_test
+        title 'Receive UDS+ Coverage Data'
+        description %(
+            Test takes from the user either: the http location of coverage data 
+            or the raw JSON of the data itself.
+            It attempts to GET the data stored at the given location if a link is provided,
+            then validates whether a FHIR resource can be generated from the input data.
+        )
+
+        input :coverage_data,
+            title: 'Coverage Data',
+            optional: true,
+            description: %q(
+                User can input the data as: 
+                a URL link to the location of the data (ex: http://www.example.com/coverage_data.json) 
+                OR a JSON string that composes the data. Leaving this blank will skip the test.
+            )
+        
+        def data_scratch
+            scratch[:data_resources] ||= {}
+        end
+
+        def data_to_test
+            data_scratch['Coverage'] ||= []
+        end
+
+        run do
+            omit_if !coverage_data.present?, "No data provided; skipping test."
+
+            # if the input is a url, else it is a json
+            if coverage_data.strip[0] != '{'
+                assert_valid_http_uri(coverage_data, "Location provided is not a valid http uri.")
+                get coverage_data
+                assert_response_status(200)
+                assert_valid_json(request.response_body, "Data received from request is not a valid JSON")
+                data = request.response_body
+            else
+                assert_valid_json(coverage_data, "JSON inputted was not in a valid format")
+                data = coverage_data
+            end
+            
+            resource = FHIR::Json.from_json(data)
+            assert resource.is_a?(FHIR::Model), "Could not generate a valid resource from the input provided"    
+            
+            if resource.is_a?(FHIR::Model)
+                data_to_test << resource
+            end
+        end
+    end
+end

data/lib/uds_plus_test_kit/input_resource_tests/read_diagnosis_test.rb

@@ -0,0 +1,54 @@
+require 'json'
+
+module UDSPlusTestKit
+    class ReadDiagnosisTest < Inferno::Test
+        id :uds_plus_read_diagnosis_test
+        title 'Receive UDS+ Diagnosis Data'
+        description %(
+            Test takes from the user either: the http location of diagnosis data 
+            or the raw JSON of the data itself.
+            It attempts to GET the data stored at the given location if a link is provided,
+            then validates whether a FHIR resource can be generated from the input data.
+        )
+
+        input :diagnosis_data,
+            title: 'Diagnosis Data',
+            optional: true,
+            description: %q(
+                User can input the data as: 
+                a URL link to the location of the data (ex: http://www.example.com/diagnosis_data.json) 
+                OR a JSON string that composes the data. Leaving this blank will skip the test.
+            )
+        
+        def data_scratch
+            scratch[:data_resources] ||= {}
+        end
+
+        def data_to_test
+            data_scratch['Condition'] ||= []
+        end
+
+        run do
+            omit_if !diagnosis_data.present?, "No data provided; skipping test."
+
+            # if the input is a url, else it is a json
+            if diagnosis_data.strip[0] != '{'
+                assert_valid_http_uri(diagnosis_data, "Location provided is not a valid http uri.")
+                get diagnosis_data
+                assert_response_status(200)
+                assert_valid_json(request.response_body, "Data received from request is not a valid JSON")
+                data = request.response_body
+            else
+                assert_valid_json(diagnosis_data, "JSON inputted was not in a valid format")
+                data = diagnosis_data
+            end
+            
+            resource = FHIR::Json.from_json(data)
+            assert resource.is_a?(FHIR::Model), "Could not generate a valid resource from the input provided"    
+            
+            if resource.is_a?(FHIR::Model)
+                data_to_test << resource
+            end
+        end
+    end
+end

data/lib/uds_plus_test_kit/input_resource_tests/read_encounter_test.rb

@@ -0,0 +1,54 @@
+require 'json'
+
+module UDSPlusTestKit
+    class ReadEncounterTest < Inferno::Test
+        id :uds_plus_read_encounter_test
+        title 'Receive UDS+ Encounter Data'
+        description %(
+            Test takes from the user either: the http location of encounter data 
+            or the raw JSON of the data itself.
+            It attempts to GET the data stored at the given location if a link is provided,
+            then validates whether a FHIR resource can be generated from the input data.
+        )
+
+        input :encounter_data,
+            title: 'Encounter Data',
+            optional: true,
+            description: %q(
+                User can input the data as: 
+                a URL link to the location of the data (ex: http://www.example.com/encounter_data.json) 
+                OR a JSON string that composes the data. Leaving this blank will skip the test.
+            )
+        
+        def data_scratch
+            scratch[:data_resources] ||= {}
+        end
+
+        def data_to_test
+            data_scratch['Encounter'] ||= []
+        end
+
+        run do
+            omit_if !encounter_data.present?, "No data provided; skipping test."
+
+            # if the input is a url, else it is a json
+            if encounter_data.strip[0] != '{'
+                assert_valid_http_uri(encounter_data, "Location provided is not a valid http uri.")
+                get encounter_data
+                assert_response_status(200)
+                assert_valid_json(request.response_body, "Data received from request is not a valid JSON")
+                data = request.response_body
+            else
+                assert_valid_json(encounter_data, "JSON inputted was not in a valid format")
+                data = encounter_data
+            end
+            
+            resource = FHIR::Json.from_json(data)
+            assert resource.is_a?(FHIR::Model), "Could not generate a valid resource from the input provided"    
+            
+            if resource.is_a?(FHIR::Model)
+                data_to_test << resource
+            end
+        end
+    end
+end

data/lib/uds_plus_test_kit/input_resource_tests/read_income_test.rb

@@ -0,0 +1,54 @@
+require 'json'
+
+module UDSPlusTestKit
+    class ReadIncomeTest < Inferno::Test
+        id :uds_plus_read_income_test
+        title 'Receive UDS+ Income Data'
+        description %(
+            Test takes from the user either: the http location of income data 
+            or the raw JSON of the data itself.
+            It attempts to GET the data stored at the given location if a link is provided,
+            then validates whether a FHIR resource can be generated from the input data.
+        )
+
+        input :income_data,
+            title: 'Income Data',
+            optional: true,
+            description: %q(
+                User can input the data as: 
+                a URL link to the location of the data (ex: http://www.example.com/income_data.json) 
+                OR a JSON string that composes the data. Leaving this blank will skip the test.
+            )
+        
+        def data_scratch
+            scratch[:data_resources] ||= {}
+        end
+
+        def data_to_test
+            data_scratch['Observation'] ||= []
+        end
+
+        run do
+            omit_if !income_data.present?, "No data provided; skipping test."
+
+            # if the input is a url, else it is a json
+            if income_data.strip[0] != '{'
+                assert_valid_http_uri(income_data, "Location provided is not a valid http uri.")
+                get income_data
+                assert_response_status(200)
+                assert_valid_json(request.response_body, "Data received from request is not a valid JSON")
+                data = request.response_body
+            else
+                assert_valid_json(income_data, "JSON inputted was not in a valid format")
+                data = income_data
+            end
+            
+            resource = FHIR::Json.from_json(data)
+            assert resource.is_a?(FHIR::Model), "Could not generate a valid resource from the input provided"    
+            
+            if resource.is_a?(FHIR::Model)
+                data_to_test << resource
+            end
+        end
+    end
+end

data/lib/uds_plus_test_kit/input_resource_tests/read_patient_test.rb

@@ -0,0 +1,54 @@
+require 'json'
+
+module UDSPlusTestKit
+    class ReadPatientTest < Inferno::Test
+        id :uds_plus_read_patient_test
+        title 'Receive UDS+ Patient Data'
+        description %(
+            Test takes from the user either: the http location of patient data 
+            or the raw JSON of the data itself.
+            It attempts to GET the data stored at the given location if a link is provided,
+            then validates whether a FHIR resource can be generated from the input data.
+        )
+
+        input :patient_data,
+            title: 'Patient Data',
+            optional: true,
+            description: %q(
+                User can input the data as: 
+                a URL link to the location of the data (ex: http://www.example.com/patient_data.json) 
+                OR a JSON string that composes the data. Leaving this blank will skip the test.
+            )
+        
+        def data_scratch
+            scratch[:data_resources] ||= {}
+        end
+
+        def data_to_test
+            data_scratch['Patient'] ||= []
+        end
+
+        run do
+            omit_if !patient_data.present?, "No data provided; skipping test."
+
+            # if the input is a url, else it is a json
+            if patient_data.strip[0] != '{'
+                assert_valid_http_uri(patient_data, "Location provided is not a valid http uri.")
+                get patient_data
+                assert_response_status(200)
+                assert_valid_json(request.response_body, "Data received from request is not a valid JSON")
+                data = request.response_body
+            else
+                assert_valid_json(patient_data, "JSON inputted was not in a valid format")
+                data = patient_data
+            end
+            
+            resource = FHIR::Json.from_json(data)
+            assert resource.is_a?(FHIR::Model), "Could not generate a valid resource from the input provided"    
+            
+            if resource.is_a?(FHIR::Model)
+                data_to_test << resource
+            end
+        end
+    end
+end

data/lib/uds_plus_test_kit/input_resource_tests/read_procedure_test.rb

@@ -0,0 +1,54 @@
+require 'json'
+
+module UDSPlusTestKit
+    class ReadProcedureTest < Inferno::Test
+        id :uds_plus_read_procedure_test
+        title 'Receive UDS+ Procedure Data'
+        description %(
+            Test takes from the user either: the http location of procedure data 
+            or the raw JSON of the data itself.
+            It attempts to GET the data stored at the given location if a link is provided,
+            then validates whether a FHIR resource can be generated from the input data.
+        )
+
+        input :procedure_data,
+            title: 'Procedure Data',
+            optional: true,
+            description: %q(
+                User can input the data as: 
+                a URL link to the location of the data (ex: http://www.example.com/procedure_data.json) 
+                OR a JSON string that composes the data. Leaving this blank will skip the test.
+            )
+        
+        def data_scratch
+            scratch[:data_resources] ||= {}
+        end
+
+        def data_to_test
+            data_scratch['Procedure'] ||= []
+        end
+
+        run do
+            omit_if !procedure_data.present?, "No data provided; skipping test."
+
+            # if the input is a url, else it is a json
+            if procedure_data.strip[0] != '{'
+                assert_valid_http_uri(procedure_data, "Location provided is not a valid http uri.")
+                get procedure_data
+                assert_response_status(200)
+                assert_valid_json(request.response_body, "Data received from request is not a valid JSON")
+                data = request.response_body
+            else
+                assert_valid_json(procedure_data, "JSON inputted was not in a valid format")
+                data = procedure_data
+            end
+            
+            resource = FHIR::Json.from_json(data)
+            assert resource.is_a?(FHIR::Model), "Could not generate a valid resource from the input provided"    
+            
+            if resource.is_a?(FHIR::Model)
+                data_to_test << resource
+            end
+        end
+    end
+end

data/lib/uds_plus_test_kit/input_resource_tests/read_sexual_orientation_test.rb

@@ -0,0 +1,54 @@
+require 'json'
+
+module UDSPlusTestKit
+    class ReadSexualOrientationTest < Inferno::Test
+        id :uds_plus_read_sexual_orientation_test
+        title 'Receive UDS+ Sexual Orientation Data'
+        description %(
+            Test takes from the user either: the http location of sexual orientation data 
+            or the raw JSON of the data itself.
+            It attempts to GET the data stored at the given location if a link is provided,
+            then validates whether a FHIR resource can be generated from the input data.
+        )
+
+        input :sexual_orientation_data,
+            title: 'Sexual Orientation Data',
+            optional: true,
+            description: %q(
+                User can input the data as: 
+                a URL link to the location of the data (ex: http://www.example.com/sexual_orientation_data.json) 
+                OR a JSON string that composes the data. Leaving this blank will skip the test.
+            )
+        
+        def data_scratch
+            scratch[:data_resources] ||= {}
+        end
+
+        def data_to_test
+            data_scratch['Observation'] ||= []
+        end
+
+        run do
+            omit_if !sexual_orientation_data.present?, "No data provided; skipping test."
+
+            # if the input is a url, else it is a json
+            if sexual_orientation_data.strip[0] != '{'
+                assert_valid_http_uri(sexual_orientation_data, "Location provided is not a valid http uri.")
+                get sexual_orientation_data
+                assert_response_status(200)
+                assert_valid_json(request.response_body, "Data received from request is not a valid JSON")
+                data = request.response_body
+            else
+                assert_valid_json(sexual_orientation_data, "JSON inputted was not in a valid format")
+                data = sexual_orientation_data
+            end
+            
+            resource = FHIR::Json.from_json(data)
+            assert resource.is_a?(FHIR::Model), "Could not generate a valid resource from the input provided"    
+            
+            if resource.is_a?(FHIR::Model)
+                data_to_test << resource
+            end
+        end
+    end
+end

data/lib/uds_plus_test_kit/input_resource_tests/resource_group.rb

@@ -0,0 +1,51 @@
+require_relative '../version'
+require_relative './read_coverage_test'
+require_relative './read_diagnosis_test'
+require_relative './read_encounter_test'
+require_relative './read_income_test'
+require_relative './read_patient_test'
+require_relative './read_procedure_test'
+require_relative './read_sexual_orientation_test'
+require_relative '../validate_coverage_test'
+require_relative '../validate_diagnosis_test'
+require_relative '../validate_encounter_test'
+require_relative '../validate_income_test'
+require_relative '../validate_patient_test'
+require_relative '../validate_procedure_test'
+require_relative '../validate_sexual_orientation_test'
+require_relative '../manifest_tests/read_manifest_test'
+require_relative '../manifest_tests/validate_manifest_test'
+
+module UDSPlusTestKit
+    class UDSPlusResourceTestGroup < Inferno::TestGroup
+        title 'Individual Resource Tests'
+        id :uds_plus_resource_test_group
+        description %(
+            The tests below skip the import manifest step. Instead, 
+            users can input individual resources, either by url or as 
+            a raw json, and have these resources validated. **Important Note:**
+            The purpose of these tests is to quickly test a specific resource. 
+            The test can only handle one json resource per type, unlike the 
+            Data Submitter test, which can handle an ndjson containing many objects.
+        )
+
+        run_as_group
+
+        test from: :uds_plus_read_manifest_test
+        test from: :uds_plus_validate_manifest_test
+        test from: :uds_plus_read_coverage_test
+        test from: :uds_plus_validate_coverage_test
+        test from: :uds_plus_read_diagnosis_test
+        test from: :uds_plus_validate_diagnosis_test
+        test from: :uds_plus_read_encounter_test
+        test from: :uds_plus_validate_encounter_test
+        test from: :uds_plus_read_income_test
+        test from: :uds_plus_validate_income_test
+        test from: :uds_plus_read_patient_test
+        test from: :uds_plus_validate_patient_test
+        test from: :uds_plus_read_procedure_test
+        test from: :uds_plus_validate_procedure_test
+        test from: :uds_plus_read_sexual_orientation_test
+        test from: :uds_plus_validate_sexual_orientation_test
+    end
+end

data/lib/uds_plus_test_kit/manifest_tests/invalid_type_test.rb

@@ -0,0 +1,40 @@
+module UDSPlusTestKit
+    class InvalidTypeTest < Inferno::Test
+        id :uds_plus_invalid_type_test
+        title 'Check For Invalid Types in Import Manifest'
+        description %(
+            Test checks the titles of the data URLs found in
+            the import manifest, and verifies that each of
+            the titles provided matches with a known UDS+ data 
+            type. Test returns a list of unmatched types found 
+            in the manifest, or passes if all titles are valid.
+        )
+
+        def data_scratch
+            scratch[:data_resources] ||= {}
+        end
+
+        def valid_data_types
+            [
+                'Coverage', 'Condition', 'Encounter', 
+                'Observation', 'Patient', 'Procedure'
+            ]
+        end
+
+        run do
+            invalid_types_found = []
+            data_scratch.keys.each do |data_type|
+                if !valid_data_types.include?(data_type)
+                    invalid_types_found << data_type
+                end
+            end
+
+            fail_message = %(
+                The following invalid resource types were declared 
+                in the import manifest: #{invalid_types_found}.
+            )
+            assert invalid_types_found.empty?, fail_message
+        end
+    end
+end
+

data/lib/uds_plus_test_kit/manifest_tests/read_data_test.rb

@@ -0,0 +1,75 @@
+require 'json'
+
+module UDSPlusTestKit
+    class ReadDataTest < Inferno::Test
+        id :uds_plus_read_data_test
+        title 'Read the contents of the import manifest'
+        description %(
+            Test iterates through the data that the Import Manifest 
+            links to. It validates whether an ndjson is found at the given points,
+            and if FHIR models can be created by the values enclosed.
+        )
+
+        def manifest_scratch
+            scratch[:manifest_resources] ||= {}
+        end
+
+        def manifest_resources
+            manifest_scratch[:all] ||= []
+        end
+
+        def data_scratch
+            scratch[:data_resources] ||= {}
+        end
+
+        def manifest_content
+            return [] if manifest_resources.empty?
+            manifest_hash = JSON.parse(manifest_resources.first.to_json)
+            manifest_hash['parameter'] ||= []
+        end
+
+        run do
+            skip_if manifest_content.empty?, "No valid resource object generated in first test, so this test will be skipped."
+  
+            manifest_content.each do |source|
+                #Iterate through manifest until udsData is found
+                next if source['name'] != 'udsData'
+
+                profile_name = "NO NAME"
+                profile_url = "NO URL"
+                source['part'].each do |container|
+                    case container['name']
+                    when 'type'
+                        profile_name = container['valueCode']
+                    when 'url'
+                        profile_url = container['valueUrl']
+                    end
+                end
+
+                assert profile_name != "NO NAME" && profile_url != "NO URL", %(
+                    Input Manifest is not configured such that resource type and url
+                    for a given input is conventionally accessible.
+                )
+
+                data_scratch[profile_name] ||= []
+
+                invalid_uri_message = "Invalid URL provided for type #{profile_name}"
+                assert_valid_http_uri(profile_url, invalid_uri_message)
+                
+                get profile_url
+                assert_response_status(200)
+
+                request.response_body.each_line do |json_body|                            
+                    assert_valid_json(json_body)
+
+                    resource = FHIR::Json.from_json(json_body)
+
+                    assert resource.is_a?(FHIR::Model), "Could not generate a valid resource from the #{profile_name} input provided" 
+                    if resource.is_a?(FHIR::Model)
+                        data_scratch[profile_name] << resource
+                    end
+                end
+            end
+        end
+    end
+end