transrate 0.0.2 → 0.0.3
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- data/lib/transrate/transrater.rb +7 -5
- data/lib/transrate/version.rb +1 -1
- metadata +1 -1
data/lib/transrate/transrater.rb
CHANGED
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@@ -2,15 +2,17 @@ module Transrate
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2
2
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3
3
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class Transrater
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4
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5
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-
def initialize
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6
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@assembly = Assembly.new
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5
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+
def initialize assembly, reference, left, right, insertsize=nil, insertsd=nil
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6
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@assembly = Assembly.new assembly
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7
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@reference = Assembly.new reference
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8
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@read_metrics = ReadMetrics.new @assembly
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8
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-
@comparative_metrics = ComparativeMetrics.new @
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9
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+
@comparative_metrics = ComparativeMetrics.new(@assembly, @reference)
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10
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self.run(left, right, insertsize, insertsd)
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end
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11
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def run
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13
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def run left, right, insertsize=nil, insertsd=nil
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@assembly.run
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13
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@read_metrics.run
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15
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@read_metrics.run(left, right)
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@comparative_metrics.run
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15
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end
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18
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data/lib/transrate/version.rb
CHANGED