transcriptic_kit 0.1.0 → 0.2.0

checksums.yaml

@@ -1,7 +1,7 @@
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data/.env.sample

@@ -0,0 +1,3 @@
+TRANSCRIPTIC_EMAIL=
+TRANSCRIPTIC_API_KEY=
+TRANSCRIPTIC_ORG_NAME_URL=

data/.gitignore

@@ -8,3 +8,4 @@
 /spec/reports/
 /tmp/
 .env
+*.gem

data/{example.rb → examples/example.rb}

@@ -9,13 +9,14 @@ client = TranscripticKit::Client.new(
   org_name: ENV['TRANSCRIPTIC_ORG_NAME_URL']
 )
 
-## Work with your Organization
+# Work with your Organization
 puts client.organization.info.name
 
-## Work with Projects
+# Work with Projects
 
-## Get all projects
+# Get all projects
 projects = client.projects.all
+puts projects
 
 ## Instantiate a new a project, then save it on the server
 project = TranscripticKit::Project.new(name: "My New Project", bsl:1)
@@ -25,12 +26,12 @@ puts project.bsl
 puts created.bsl
 # => 1
 
-project.bsl = "a"
+project.bsl = "2"
 puts project.bsl
 # => 2
 
 ## Update on the server
-updated = client.projects.update(project, id: project.id)
+updated = client.projects.update(project, id: created.id)
 puts updated.bsl
 # => 2
 

data/examples/run_example.rb

@@ -0,0 +1,25 @@
+require './lib/transcriptic_kit'
+require 'dotenv'
+Dotenv.load
+
+## Create the API client
+client = TranscripticKit::Client.new(
+  email: ENV['TRANSCRIPTIC_EMAIL'],
+  key: ENV['TRANSCRIPTIC_API_KEY'],
+  org_name: ENV['TRANSCRIPTIC_ORG_NAME_URL']
+)
+
+## Fetch Runs
+projects = client.projects.all
+run = client.runs.all(project_id: projects[0].id)
+puts "#{run.length} runs"
+
+## Submit Runs
+string = '{"refs": {"working_sypro": {"new": "micro-1.5", "discard": true}, "milli_lyso": {"new": "micro-1.5", "discard": true}, "working_lyso": {"new": "micro-1.5", "discard": true}, "sypro_mm-1_2016-09-22": {"new": "micro-1.5", "discard": true}, "assay_plate": {"new": "96-pcr", "store": {"where": "cold_4"}}}, "outs": {"working_lyso": {"0": {"properties": {"concentration": "83:micromole / liter"}}}, "milli_lyso": {"0": {"properties": {"concentration": "0.83:millimole / liter"}}}, "sypro_mm-1_2016-09-22": {"0": {"name": "sypro_mm"}}}, "instructions": [{"to": [{"volume": "900.0:microliter", "well": "milli_lyso/0"}, {"volume": "100.0:microliter", "well": "milli_lyso/0"}], "op": "provision", "resource_id": "rs17gmh5wafm5p"}, {"to": [{"volume": "1.0:microliter", "well": "milli_lyso/0"}], "op": "provision", "resource_id": "rs18u5sv3y8haj"}, {"groups": [{"mix": [{"volume": "500:microliter", "well": "milli_lyso/0", "repetitions": 10, "speed": "100:microliter/second"}]}], "op": "pipette"}, {"to": [{"volume": "100.0:microliter", "well": "working_lyso/0"}], "op": "provision", "resource_id": "rs17gmh5wafm5p"}, {"groups": [{"transfer": [{"volume": "10.0:microliter", "to": "working_lyso/0", "from": "milli_lyso/0", "mix_after": {"volume": "25:microliter", "repetitions": 10, "speed": "100:microliter/second"}}]}, {"mix": [{"volume": "500:microliter", "well": "working_lyso/0", "repetitions": 10, "speed": "100:microliter/second"}]}, {"mix": [{"volume": "200:microliter", "well": "working_sypro/0", "repetitions": 10, "speed": "50:microliter/second"}]}], "op": "pipette"}, {"to": [{"volume": "268.8:microliter", "well": "sypro_mm-1_2016-09-22/0"}], "op": "provision", "resource_id": "rs17gmh5wafm5p"}, {"to": [{"volume": "11.2:microliter", "well": "sypro_mm-1_2016-09-22/0"}], "op": "provision", "resource_id": "rs18xyxuedc3gp"}, {"reagent": "pbs", "object": "assay_plate", "columns": [{"column": 0, "volume": "35.0:microliter"}], "op": "dispense"}, {"groups": [{"distribute": {"to": [{"volume": "5.0:microliter", "well": "assay_plate/0"}, {"volume": "5.0:microliter", "well": "assay_plate/12"}, {"volume": "5.0:microliter", "well": "assay_plate/24"}, {"volume": "5.0:microliter", "well": "assay_plate/36"}, {"volume": "5.0:microliter", "well": "assay_plate/48"}, {"volume": "5.0:microliter", "well": "assay_plate/60"}, {"volume": "5.0:microliter", "well": "assay_plate/72"}, {"volume": "5.0:microliter", "well": "assay_plate/84"}, {"volume": "5.0:microliter", "well": "assay_plate/1"}, {"volume": "5.0:microliter", "well": "assay_plate/13"}, {"volume": "5.0:microliter", "well": "assay_plate/25"}, {"volume": "5.0:microliter", "well": "assay_plate/37"}, {"volume": "5.0:microliter", "well": "assay_plate/49"}, {"volume": "5.0:microliter", "well": "assay_plate/61"}, {"volume": "5.0:microliter", "well": "assay_plate/73"}, {"volume": "5.0:microliter", "well": "assay_plate/85"}, {"volume": "5.0:microliter", "well": "assay_plate/2"}, {"volume": "5.0:microliter", "well": "assay_plate/14"}, {"volume": "5.0:microliter", "well": "assay_plate/26"}, {"volume": "5.0:microliter", "well": "assay_plate/38"}, {"volume": "5.0:microliter", "well": "assay_plate/50"}, {"volume": "5.0:microliter", "well": "assay_plate/62"}, {"volume": "5.0:microliter", "well": "assay_plate/74"}, {"volume": "5.0:microliter", "well": "assay_plate/86"}, {"volume": "5.0:microliter", "well": "assay_plate/3"}, {"volume": "5.0:microliter", "well": "assay_plate/15"}, {"volume": "5.0:microliter", "well": "assay_plate/27"}, {"volume": "5.0:microliter", "well": "assay_plate/39"}, {"volume": "5.0:microliter", "well": "assay_plate/51"}, {"volume": "5.0:microliter", "well": "assay_plate/63"}, {"volume": "5.0:microliter", "well": "assay_plate/75"}, {"volume": "5.0:microliter", "well": "assay_plate/87"}, {"volume": "5.0:microliter", "well": "assay_plate/4"}, {"volume": "5.0:microliter", "well": "assay_plate/16"}, {"volume": "5.0:microliter", "well": "assay_plate/28"}, {"volume": "5.0:microliter", "well": "assay_plate/40"}, {"volume": "5.0:microliter", "well": "assay_plate/52"}, {"volume": "5.0:microliter", "well": "assay_plate/64"}, {"volume": "5.0:microliter", "well": "assay_plate/76"}, {"volume": "5.0:microliter", "well": "assay_plate/88"}], "from": "sypro_mm-1_2016-09-22/0", "allow_carryover": false}}, {"transfer": [{"volume": "2.0:microliter", "to": "assay_plate/0", "from": "working_lyso/0", "mix_after": {"volume": "25:microliter", "repetitions": 10, "speed": "100:microliter/second"}}]}, {"transfer": [{"volume": "2.0:microliter", "to": "assay_plate/12", "from": "working_lyso/0", "mix_after": {"volume": "25:microliter", "repetitions": 10, "speed": "100:microliter/second"}}]}, {"transfer": [{"volume": "2.0:microliter", "to": "assay_plate/24", "from": "working_lyso/0", "mix_after": {"volume": "25:microliter", "repetitions": 10, "speed": "100:microliter/second"}}]}, {"transfer": [{"volume": "2.0:microliter", "to": "assay_plate/36", "from": "working_lyso/0", "mix_after": {"volume": "25:microliter", "repetitions": 10, "speed": "100:microliter/second"}}]}, {"transfer": [{"volume": "2.0:microliter", "to": "assay_plate/48", "from": "working_lyso/0", "mix_after": {"volume": "25:microliter", "repetitions": 10, "speed": "100:microliter/second"}}]}, {"transfer": [{"volume": "2.0:microliter", "to": "assay_plate/60", "from": "working_lyso/0", "mix_after": {"volume": "25:microliter", "repetitions": 10, "speed": "100:microliter/second"}}]}, {"transfer": [{"volume": "2.0:microliter", "to": "assay_plate/72", "from": "working_lyso/0", "mix_after": {"volume": "25:microliter", "repetitions": 10, "speed": "100:microliter/second"}}]}, {"transfer": [{"volume": "2.0:microliter", "to": "assay_plate/84", "from": "working_lyso/0", "mix_after": {"volume": "25:microliter", "repetitions": 10, "speed": "100:microliter/second"}}]}, {"transfer": [{"volume": "2.0:microliter", "to": "assay_plate/1", "from": "working_lyso/0", "mix_after": {"volume": "25:microliter", "repetitions": 10, "speed": "100:microliter/second"}}]}, {"transfer": [{"volume": "2.0:microliter", "to": "assay_plate/13", "from": "working_lyso/0", "mix_after": {"volume": "25:microliter", "repetitions": 10, "speed": "100:microliter/second"}}]}, {"transfer": [{"volume": "2.0:microliter", "to": "assay_plate/25", "from": "working_lyso/0", "mix_after": {"volume": "25:microliter", "repetitions": 10, "speed": "100:microliter/second"}}]}, {"transfer": [{"volume": "2.0:microliter", "to": "assay_plate/37", "from": "working_lyso/0", "mix_after": {"volume": "25:microliter", "repetitions": 10, "speed": "100:microliter/second"}}]}, {"transfer": [{"volume": "2.0:microliter", "to": "assay_plate/49", "from": "working_lyso/0", "mix_after": {"volume": "25:microliter", "repetitions": 10, "speed": "100:microliter/second"}}]}, {"transfer": [{"volume": "2.0:microliter", "to": "assay_plate/61", "from": "working_lyso/0", "mix_after": {"volume": "25:microliter", "repetitions": 10, "speed": "100:microliter/second"}}]}, {"transfer": [{"volume": "2.0:microliter", "to": "assay_plate/73", "from": "working_lyso/0", "mix_after": {"volume": "25:microliter", "repetitions": 10, "speed": "100:microliter/second"}}]}, {"transfer": [{"volume": "2.0:microliter", "to": "assay_plate/85", "from": "working_lyso/0", "mix_after": {"volume": "25:microliter", "repetitions": 10, "speed": "100:microliter/second"}}]}, {"transfer": [{"volume": "2.0:microliter", "to": "assay_plate/2", "from": "working_lyso/0", "mix_after": {"volume": "25:microliter", "repetitions": 10, "speed": "100:microliter/second"}}]}, {"transfer": [{"volume": "2.0:microliter", "to": "assay_plate/14", "from": "working_lyso/0", "mix_after": {"volume": "25:microliter", "repetitions": 10, "speed": "100:microliter/second"}}]}, {"transfer": [{"volume": "2.0:microliter", "to": "assay_plate/26", "from": "working_lyso/0", "mix_after": {"volume": "25:microliter", "repetitions": 10, "speed": "100:microliter/second"}}]}, {"transfer": [{"volume": "2.0:microliter", "to": "assay_plate/38", "from": "working_lyso/0", "mix_after": {"volume": "25:microliter", "repetitions": 10, "speed": "100:microliter/second"}}]}, {"transfer": [{"volume": "2.0:microliter", "to": "assay_plate/50", "from": "working_lyso/0", "mix_after": {"volume": "25:microliter", "repetitions": 10, "speed": "100:microliter/second"}}]}, {"transfer": [{"volume": "2.0:microliter", "to": "assay_plate/62", "from": "working_lyso/0", "mix_after": {"volume": "25:microliter", "repetitions": 10, "speed": "100:microliter/second"}}]}, {"transfer": [{"volume": "2.0:microliter", "to": "assay_plate/74", "from": "working_lyso/0", "mix_after": {"volume": "25:microliter", "repetitions": 10, "speed": "100:microliter/second"}}]}, {"transfer": [{"volume": "2.0:microliter", "to": "assay_plate/86", "from": "working_lyso/0", "mix_after": {"volume": "25:microliter", "repetitions": 10, "speed": "100:microliter/second"}}]}, {"transfer": [{"volume": "2.0:microliter", "to": "assay_plate/3", "from": "working_lyso/0", "mix_after": {"volume": "25:microliter", "repetitions": 10, "speed": "100:microliter/second"}}]}, {"transfer": [{"volume": "2.0:microliter", "to": "assay_plate/15", "from": "working_lyso/0", "mix_after": {"volume": "25:microliter", "repetitions": 10, "speed": "100:microliter/second"}}]}, {"transfer": [{"volume": "2.0:microliter", "to": "assay_plate/27", "from": "working_lyso/0", "mix_after": {"volume": "25:microliter", "repetitions": 10, "speed": "100:microliter/second"}}]}, {"transfer": [{"volume": "2.0:microliter", "to": "assay_plate/39", "from": "working_lyso/0", "mix_after": {"volume": "25:microliter", "repetitions": 10, "speed": "100:microliter/second"}}]}, {"transfer": [{"volume": "2.0:microliter", "to": "assay_plate/51", "from": "working_lyso/0", "mix_after": {"volume": "25:microliter", "repetitions": 10, "speed": "100:microliter/second"}}]}, {"transfer": [{"volume": "2.0:microliter", "to": "assay_plate/63", "from": "working_lyso/0", "mix_after": {"volume": "25:microliter", "repetitions": 10, "speed": "100:microliter/second"}}]}, {"transfer": [{"volume": "2.0:microliter", "to": "assay_plate/75", "from": "working_lyso/0", "mix_after": {"volume": "25:microliter", "repetitions": 10, "speed": "100:microliter/second"}}]}, {"transfer": [{"volume": "2.0:microliter", "to": "assay_plate/87", "from": "working_lyso/0", "mix_after": {"volume": "25:microliter", "repetitions": 10, "speed": "100:microliter/second"}}]}, {"transfer": [{"volume": "2.0:microliter", "to": "assay_plate/4", "from": "working_lyso/0", "mix_after": {"volume": "25:microliter", "repetitions": 10, "speed": "100:microliter/second"}}]}, {"transfer": [{"volume": "2.0:microliter", "to": "assay_plate/16", "from": "working_lyso/0", "mix_after": {"volume": "25:microliter", "repetitions": 10, "speed": "100:microliter/second"}}]}, {"transfer": [{"volume": "2.0:microliter", "to": "assay_plate/28", "from": "working_lyso/0", "mix_after": {"volume": "25:microliter", "repetitions": 10, "speed": "100:microliter/second"}}]}, {"transfer": [{"volume": "2.0:microliter", "to": "assay_plate/40", "from": "working_lyso/0", "mix_after": {"volume": "25:microliter", "repetitions": 10, "speed": "100:microliter/second"}}]}, {"transfer": [{"volume": "2.0:microliter", "to": "assay_plate/52", "from": "working_lyso/0", "mix_after": {"volume": "25:microliter", "repetitions": 10, "speed": "100:microliter/second"}}]}, {"transfer": [{"volume": "2.0:microliter", "to": "assay_plate/64", "from": "working_lyso/0", "mix_after": {"volume": "25:microliter", "repetitions": 10, "speed": "100:microliter/second"}}]}, {"transfer": [{"volume": "2.0:microliter", "to": "assay_plate/76", "from": "working_lyso/0", "mix_after": {"volume": "25:microliter", "repetitions": 10, "speed": "100:microliter/second"}}]}], "op": "pipette"}, {"object": "assay_plate", "type": "ultra-clear", "op": "seal"}, {"acceleration": "2000:g", "duration": "2.0:minute", "object": "assay_plate", "op": "spin"}, {"dataref": "thermofluor", "melting": {"start": "25.00:celsius", "rate": "30.00:second", "end": "99.00:celsius", "increment": "0.50:celsius"}, "object": "assay_plate", "volume": "45:microliter", "groups": [{"cycles": 1, "steps": [{"duration": "30.0:second", "read": true, "temperature": "25.0:celsius"}]}], "dyes": {"FRET": ["A1", "B1", "C1", "D1", "E1", "F1", "G1", "H1", "A2", "B2", "C2", "D2", "E2", "F2", "G2", "H2", "A3", "B3", "C3", "D3", "E3", "F3", "G3", "H3", "A4", "B4", "C4", "D4", "E4", "F4", "G4", "H4", "A5", "B5", "C5", "D5", "E5", "F5", "G5", "H5"]}, "op": "thermocycle"}]}
+'
+protocol1 = JSON.parse(string)
+new_run = TranscripticKit::Run.new(title: "gem test run", test_mode: true, protocol: protocol1)
+
+resp = client.runs.create(new_run, project_id: projects[0].id)
+
+puts "Run submitted with ID #{resp.id}"

data/lib/transcriptic_kit.rb

@@ -13,14 +13,17 @@ module TranscripticKit
   require_relative 'transcriptic_kit/models/base_model'
   require_relative 'transcriptic_kit/models/project'
   require_relative 'transcriptic_kit/models/organization'
+  require_relative 'transcriptic_kit/models/run'
 
   # Resources
   require_relative 'transcriptic_kit/resources/project_resource'
   require_relative 'transcriptic_kit/resources/organization_resource'
+  require_relative 'transcriptic_kit/resources/run_resource'
 
   # JSON Maps
   require_relative 'transcriptic_kit/mappings/project_mapping'
   require_relative 'transcriptic_kit/mappings/organization_mapping'
+  require_relative 'transcriptic_kit/mappings/run_mapping'
 
   # Errors
   require_relative 'transcriptic_kit/mappings/error_mapping'

data/lib/transcriptic_kit/client.rb

@@ -1,5 +1,8 @@
 require 'faraday'
 
+TRANSCRIPTIC_URL = "https://secure.transcriptic.com/"
+
+
 module TranscripticKit
   class Client
 
@@ -9,7 +12,6 @@ module TranscripticKit
       @email = options.with_indifferent_access[:email]
       @key = options.with_indifferent_access[:key]
       @org_name = options.with_indifferent_access[:org_name]
-      @org_url = "https://secure.transcriptic.com/#{options.with_indifferent_access[:org_name]}"
     end
 
     def connection
@@ -21,13 +23,14 @@ module TranscripticKit
     def self.resources
       {
         projects: ProjectResource,
-        organization: OrganizationResource
+        organization: OrganizationResource,
+        runs: RunResource
       }
     end
 
     def method_missing(name, *args, &block)
       if self.class.resources.keys.include?(name)
-        resources[name] ||= self.class.resources[name].new(connection: connection)
+        resources[name] ||= self.class.resources[name].new(connection: connection, org_name: @org_name)
         resources[name]
       else
         super
@@ -42,7 +45,7 @@ module TranscripticKit
 
     def connection_options
       {
-        url: org_url,
+        url: TRANSCRIPTIC_URL + "/#{@org_name}",
         headers: {
           content_type: 'application/json',
           accept: 'application/json',

data/lib/transcriptic_kit/mappings/run_mapping.rb

@@ -0,0 +1,14 @@
+module TranscripticKit
+  class RunMapping
+    include Kartograph::DSL
+
+    kartograph do
+      mapping Run
+      root_key singular: 'run',  scopes: [:update]
+
+      property :id, :title, :status, :created_at, :accepted_at, :started_at, :refs, :instructions, :updated_at, :completed_at, :results, :progress, :total_cost, :bsl, :owner, scopes: [:read]
+      property :title, :test_mode, :protocol, scopes: [:create]
+      # property :refs, :instructions, key: "protocol", scopes: [:create]
+    end
+  end
+end

data/lib/transcriptic_kit/models/run.rb

@@ -0,0 +1,12 @@
+module TranscripticKit
+  class Run < BaseModel
+    [:id, :status, :title, :protocol, :created_at, :accepted_at, :started_at, :updated_at, :completed_at, :results,
+      :test_mode, :progress, :total_cost, :bsl, :protocol, :refs, :instructions, :owner].each do |key|
+      attribute(key)
+    end
+    #For creates
+    attribute :title
+    attribute :test_mode
+    attribute :protocol
+  end
+end

data/lib/transcriptic_kit/resources/organization_resource.rb

@@ -1,9 +1,20 @@
 module TranscripticKit
   class OrganizationResource < ResourceKit::Resource
     include ErrorHandlingResourcable
+
+    def self.new(options)
+      @org_name = options[:org_name]
+
+      self.resources.each do |res|
+        res.instance_eval("@path = '#{@org_name}/#{res.path}'")
+      end
+
+      super(connection: options[:connection])
+    end
+
     resources do
       default_handler(:ok) {|r| OrganizationMapping.extract_single(r.body, :read) }
-      get 'swiftpharma' => :info
+      get '' => :info
     end
   end
 end

data/lib/transcriptic_kit/resources/project_resource.rb

@@ -2,6 +2,16 @@ module TranscripticKit
   class ProjectResource < ResourceKit::Resource
     include ErrorHandlingResourcable
 
+    def self.new(options)
+      @org_name = options[:org_name]
+
+      self.resources.each do |res|
+        res.instance_eval("@path = '#{@org_name}/#{res.path}'")
+      end
+      
+      super(connection: options[:connection])
+    end
+
     resources do
       default_handler(422) { |response| ErrorMapping.extract_single(response.body, :read) }
       default_handler(:ok, :created) { |response| ProjectMapping.extract_single(response.body, :read) }
@@ -9,26 +19,27 @@ module TranscripticKit
 
       action :all do
         verb :get
-        path 'swiftpharma/projects.json'
+        puts @org_name
+        path "projects.json"
         handler(200) { |response| ProjectMapping.extract_collection(response.body, :read) }
       end
 
       action :find do
         verb :get
-        path ':id.json'
+        path ":id.json"
         handler(200) { |response| ProjectMapping.extract_single(response.body, :read) }
       end
 
       action :create do
         verb :post
-        path 'swiftpharma'
+        path ""
         body { |object| ProjectMapping.representation_for(:create, object) }
         handler(202) { |response| ProjectMapping.extract_single(response.body, :read) }
       end
 
       action :update do
         verb :put
-        path 'swiftpharma/:id'
+        path ":id"
         body { |object| ProjectMapping.representation_for(:update, object) }
         handler(200) { |response, object| ProjectMapping.extract_into_object(object, response.body, :read) }
       end

data/lib/transcriptic_kit/resources/run_resource.rb

@@ -0,0 +1,47 @@
+module TranscripticKit
+  class RunResource < ResourceKit::Resource
+    include ErrorHandlingResourcable
+
+    def self.new(options)
+      @org_name = options[:org_name]
+
+      self.resources.each do |res|
+        res.instance_eval("@path = '#{@org_name}/#{res.path}'")
+      end
+
+      super(connection: options[:connection])
+    end
+
+    resources do
+      default_handler(422) { |response| ErrorMapping.extract_single(response.body, :read) }
+      default_handler(:ok, :created) { |response| RunMapping.extract_single(response.body, :read) }
+      default_handler { |response| raise "Unexpected response status #{response.status}... #{response.inspect}" }
+
+      action :all do
+        verb :get
+        path ':project_id/runs.json'
+        handler(200) { |response| RunMapping.extract_collection(response.body, :read) }
+      end
+
+      action :find do
+        verb :get
+        path ':project_id/runs/:run_id.json'
+        handler(200) { |response| RunMapping.extract_single(response.body, :read) }
+      end
+
+      action :create do
+        verb :post
+        path ':project_id/runs'
+        body { |object| RunMapping.representation_for(:create, object) }
+        handler(202) { |response| RunMapping.extract_single(response.body, :read) }
+      end
+
+      action :update do
+        verb :put
+        path ':project_id/:run_id'
+        body { |object| RunMapping.representation_for(:update, object) }
+        handler(200) { |response, object| RunMapping.extract_into_object(object, response.body, :read) }
+      end
+    end
+  end
+end

data/lib/transcriptic_kit/version.rb

@@ -1,3 +1,3 @@
 module TranscripticKit
-  VERSION = "0.1.0"
+  VERSION = "0.2.0"
 end

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: transcriptic_kit
 version: !ruby/object:Gem::Version
-  version: 0.1.0
+  version: 0.2.0
 platform: ruby
 authors:
 - Ben Miles
@@ -135,6 +135,7 @@ executables: []
 extensions: []
 extra_rdoc_files: []
 files:
+- ".env.sample"
 - ".gitignore"
 - ".rspec"
 - ".travis.yml"
@@ -145,19 +146,22 @@ files:
 - Rakefile
 - bin/console
 - bin/setup
-- example.rb
+- examples/example.rb
+- examples/run_example.rb
 - lib/transcriptic_kit.rb
 - lib/transcriptic_kit/client.rb
-- lib/transcriptic_kit/configuration.rb
 - lib/transcriptic_kit/error_handling_resourcable.rb
 - lib/transcriptic_kit/mappings/error_mapping.rb
 - lib/transcriptic_kit/mappings/organization_mapping.rb
 - lib/transcriptic_kit/mappings/project_mapping.rb
+- lib/transcriptic_kit/mappings/run_mapping.rb
 - lib/transcriptic_kit/models/base_model.rb
 - lib/transcriptic_kit/models/organization.rb
 - lib/transcriptic_kit/models/project.rb
+- lib/transcriptic_kit/models/run.rb
 - lib/transcriptic_kit/resources/organization_resource.rb
 - lib/transcriptic_kit/resources/project_resource.rb
+- lib/transcriptic_kit/resources/run_resource.rb
 - lib/transcriptic_kit/version.rb
 - transcriptic_kit.gemspec
 homepage: https://github.com/bmiles/transcriptic_kit

data/lib/transcriptic_kit/configuration.rb

@@ -1,11 +0,0 @@
-module Transcriptic
-  class Configuration
-    attr_accessor :transcriptic_email, :transcriptic_api_key, :transcriptic_org_name_url
-
-    def initialize
-      @transcriptic_email = nil
-      @transcriptic_api_key = nil
-      @transcriptic_org_name_url = nil
-    end
-  end
-end