transcriptic_kit 0.1.0

checksums.yaml

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data/.gitignore

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+/.bundle/
+/.yardoc
+/Gemfile.lock
+/_yardoc/
+/coverage/
+/doc/
+/pkg/
+/spec/reports/
+/tmp/
+.env

data/.rspec

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+--format documentation
+--color

data/.travis.yml

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+language: ruby
+rvm:
+  - 2.2.1
+before_install: gem install bundler -v 1.11.2

data/CODE_OF_CONDUCT.md

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+# Contributor Code of Conduct
+
+As contributors and maintainers of this project, and in the interest of
+fostering an open and welcoming community, we pledge to respect all people who
+contribute through reporting issues, posting feature requests, updating
+documentation, submitting pull requests or patches, and other activities.
+
+We are committed to making participation in this project a harassment-free
+experience for everyone, regardless of level of experience, gender, gender
+identity and expression, sexual orientation, disability, personal appearance,
+body size, race, ethnicity, age, religion, or nationality.
+
+Examples of unacceptable behavior by participants include:
+
+* The use of sexualized language or imagery
+* Personal attacks
+* Trolling or insulting/derogatory comments
+* Public or private harassment
+* Publishing other's private information, such as physical or electronic
+  addresses, without explicit permission
+* Other unethical or unprofessional conduct
+
+Project maintainers have the right and responsibility to remove, edit, or
+reject comments, commits, code, wiki edits, issues, and other contributions
+that are not aligned to this Code of Conduct, or to ban temporarily or
+permanently any contributor for other behaviors that they deem inappropriate,
+threatening, offensive, or harmful.
+
+By adopting this Code of Conduct, project maintainers commit themselves to
+fairly and consistently applying these principles to every aspect of managing
+this project. Project maintainers who do not follow or enforce the Code of
+Conduct may be permanently removed from the project team.
+
+This code of conduct applies both within project spaces and in public spaces
+when an individual is representing the project or its community.
+
+Instances of abusive, harassing, or otherwise unacceptable behavior may be
+reported by contacting a project maintainer at ben.miles2@gmail.com. All
+complaints will be reviewed and investigated and will result in a response that
+is deemed necessary and appropriate to the circumstances. Maintainers are
+obligated to maintain confidentiality with regard to the reporter of an
+incident.
+
+This Code of Conduct is adapted from the [Contributor Covenant][homepage],
+version 1.3.0, available at
+[http://contributor-covenant.org/version/1/3/0/][version]
+
+[homepage]: http://contributor-covenant.org
+[version]: http://contributor-covenant.org/version/1/3/0/

data/Gemfile

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+source 'https://rubygems.org'
+
+# Specify your gem's dependencies in transcriptic_kit.gemspec
+gemspec

data/LICENSE.txt

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+The MIT License (MIT)
+
+Copyright (c) 2016 Ben Miles
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in
+all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+THE SOFTWARE.

data/README.md

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+# TranscripticKit
+
+Based on DropletKit from Digital Ocean
+
+## Installation
+
+Add this line to your application's Gemfile:
+
+```ruby
+gem 'transcriptic_kit'
+```
+
+And then execute:
+
+    $ bundle
+
+Or install it yourself as:
+
+    $ gem install transcriptic_kit
+
+## Usage
+
+With your account details, retrieve a client instance with it.
+
+```ruby
+client = TranscripticKit::Client.new(
+  email: 'TRANSCRIPTIC_EMAIL',
+  key: 'TRANSCRIPTIC_API_KEY',
+  org_name: 'TRANSCRIPTIC_ORG_NAME_URL'
+)
+```
+
+## Design
+
+TranscripticKit follows a strict design of resources as methods on your client. For examples, for projects, you will call your client like this:
+
+```ruby
+client = TranscripticKit::Client.new(
+  email: 'TRANSCRIPTIC_EMAIL',
+  key: 'TRANSCRIPTIC_API_KEY',
+  org_name: 'TRANSCRIPTIC_ORG_NAME_URL'
+)
+client.projects #=> ProjectsResource
+```
+
+TranscripticKit will return Plain Old Ruby objects(tm) that contain the information provided by the API. For example:
+
+```ruby
+client = TranscripticKit::Client.new(
+  email: 'TRANSCRIPTIC_EMAIL',
+  key: 'TRANSCRIPTIC_API_KEY',
+  org_name: 'TRANSCRIPTIC_ORG_NAME_URL'
+)
+client.projects.all
+# => [ TranscripticKit::Project(id: "pbar", name: 'Some study', ...), TranscripticKit::Project(id: "pfoo", name: 'Mammoth Cloning', ...) ]
+```
+
+## Development
+
+After checking out the repo, run `bin/setup` to install dependencies. Then, run `rake spec` to run the tests. You can also run `bin/console` for an interactive prompt that will allow you to experiment.
+
+To install this gem onto your local machine, run `bundle exec rake install`. To release a new version, update the version number in `version.rb`, and then run `bundle exec rake release`, which will create a git tag for the version, push git commits and tags, and push the `.gem` file to [rubygems.org](https://rubygems.org).
+
+## Contributing
+
+Bug reports and pull requests are welcome on GitHub at https://github.com/[USERNAME]/transcriptic_kit. This project is intended to be a safe, welcoming space for collaboration, and contributors are expected to adhere to the [Contributor Covenant](http://contributor-covenant.org) code of conduct.
+
+
+## License
+
+The gem is available as open source under the terms of the [MIT License](http://opensource.org/licenses/MIT).

data/Rakefile

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+require "bundler/gem_tasks"
+require "rspec/core/rake_task"
+
+RSpec::Core::RakeTask.new(:spec)
+
+task :default => :spec

data/bin/console

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+#!/usr/bin/env ruby
+
+require "bundler/setup"
+require "transcriptic_kit"
+
+# You can add fixtures and/or initialization code here to make experimenting
+# with your gem easier. You can also use a different console, if you like.
+
+# (If you use this, don't forget to add pry to your Gemfile!)
+# require "pry"
+# Pry.start
+
+require "irb"
+IRB.start

data/bin/setup

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+#!/usr/bin/env bash
+set -euo pipefail
+IFS=$'\n\t'
+set -vx
+
+bundle install
+
+# Do any other automated setup that you need to do here

data/example.rb

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+require './lib/transcriptic_kit'
+require 'dotenv'
+Dotenv.load
+
+## Create the API client
+client = TranscripticKit::Client.new(
+  email: ENV['TRANSCRIPTIC_EMAIL'],
+  key: ENV['TRANSCRIPTIC_API_KEY'],
+  org_name: ENV['TRANSCRIPTIC_ORG_NAME_URL']
+)
+
+## Work with your Organization
+puts client.organization.info.name
+
+## Work with Projects
+
+## Get all projects
+projects = client.projects.all
+
+## Instantiate a new a project, then save it on the server
+project = TranscripticKit::Project.new(name: "My New Project", bsl:1)
+created = client.projects.create(project)
+puts project.bsl
+# => 1
+puts created.bsl
+# => 1
+
+project.bsl = "a"
+puts project.bsl
+# => 2
+
+## Update on the server
+updated = client.projects.update(project, id: project.id)
+puts updated.bsl
+# => 2
+
+## Work with Runs

data/lib/transcriptic_kit/client.rb

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+require 'faraday'
+
+module TranscripticKit
+  class Client
+
+    attr_reader :email, :key, :org_name, :org_url
+
+    def initialize(options = {})
+      @email = options.with_indifferent_access[:email]
+      @key = options.with_indifferent_access[:key]
+      @org_name = options.with_indifferent_access[:org_name]
+      @org_url = "https://secure.transcriptic.com/#{options.with_indifferent_access[:org_name]}"
+    end
+
+    def connection
+      Faraday.new(connection_options) do |req|
+        req.adapter :net_http
+      end
+    end
+
+    def self.resources
+      {
+        projects: ProjectResource,
+        organization: OrganizationResource
+      }
+    end
+
+    def method_missing(name, *args, &block)
+      if self.class.resources.keys.include?(name)
+        resources[name] ||= self.class.resources[name].new(connection: connection)
+        resources[name]
+      else
+        super
+      end
+    end
+
+    def resources
+      @resources ||= {}
+    end
+
+    private
+
+    def connection_options
+      {
+        url: org_url,
+        headers: {
+          content_type: 'application/json',
+          accept: 'application/json',
+          "X-User-Email": email,
+          "X-User-Token": key
+        }
+      }
+    end
+  end
+end

data/lib/transcriptic_kit/configuration.rb

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+module Transcriptic
+  class Configuration
+    attr_accessor :transcriptic_email, :transcriptic_api_key, :transcriptic_org_name_url
+
+    def initialize
+      @transcriptic_email = nil
+      @transcriptic_api_key = nil
+      @transcriptic_org_name_url = nil
+    end
+  end
+end

data/lib/transcriptic_kit/error_handling_resourcable.rb

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+module ErrorHandlingResourcable
+  def self.included(base)
+    base.send(:resources) do
+      default_handler do |response|
+        if (200...299).include?(response.status)
+          next
+        elsif response.status == 429
+          error = TranscripticKit::RateLimitReached.new("#{response.status}: #{response.body}")
+          error.limit = response.headers['RateLimit-Limit']
+          error.remaining = response.headers['RateLimit-Remaining']
+          error.reset_at = response.headers['RateLimit-Reset']
+          raise error
+        else
+          raise TranscripticKit::Error.new("#{response.status}: #{response.body}")
+        end
+      end
+    end
+  end
+end

data/lib/transcriptic_kit/mappings/error_mapping.rb

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+module TranscripticKit
+  class ErrorMapping
+    Error = Struct.new(:message, :id)
+
+    include Kartograph::DSL
+
+    kartograph do
+      mapping Error
+
+      property :id, scopes: [:read]
+      property :message, scopes: [:read]
+    end
+
+    def self.fail_with(klass, content)
+      error = extract_single(content, :read)
+      raise klass, error.message
+    end
+  end
+end

data/lib/transcriptic_kit/mappings/organization_mapping.rb

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+module TranscripticKit
+  class OrganizationMapping
+    include Kartograph::DSL
+
+    kartograph do
+      mapping Organization
+      root_key plural: 'results',  scopes: [:read]
+
+      property :id, :name, :created_at, :subdomain, :profile_photo_attachment_url, :collaborators, :addresses, scopes: [:read]
+    end
+  end
+end

data/lib/transcriptic_kit/mappings/project_mapping.rb

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+module TranscripticKit
+  class ProjectMapping
+    include Kartograph::DSL
+
+    kartograph do
+      mapping Project
+      root_key plural: 'results',  scopes: [:read]
+      root_key singular: 'project',  scopes: [:update]
+
+      property :name, :webhook_url, :bsl, scopes: [:read, :create]
+      property :id, :created_at, :updated_at, :archived_at, :users, scopes: [:read]
+      property :name, :bsl, :webhook_url, scopes: [:update]
+    end
+  end
+end

data/lib/transcriptic_kit/models/base_model.rb

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+require 'virtus'
+
+module TranscripticKit
+  class BaseModel
+    include Virtus.model
+    include Virtus::Equalizer.new(name || inspect)
+
+    def inspect
+      values = Hash[instance_variables.map { |name| [name, instance_variable_get(name)] } ]
+      "<#{self.class.name} #{values}>"
+    end
+  end
+end

data/lib/transcriptic_kit/models/organization.rb

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+module TranscripticKit
+  class Organization < BaseModel
+    [:id, :name, :created_at, :subdomain, :profile_photo_attachment_url, :collaborators, :addresses].each do |key|
+      attribute(key)
+    end
+  end
+end

data/lib/transcriptic_kit/models/project.rb

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+module TranscripticKit
+  class Project < BaseModel
+    [:id, :name, :created_at, :updated_at, :archived_at, :webhook_url, :bsl, :users].each do |key|
+      attribute(key)
+    end
+    attribute :name
+    attribute :bsl
+  end
+end

data/lib/transcriptic_kit/resources/organization_resource.rb

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+module TranscripticKit
+  class OrganizationResource < ResourceKit::Resource
+    include ErrorHandlingResourcable
+    resources do
+      default_handler(:ok) {|r| OrganizationMapping.extract_single(r.body, :read) }
+      get 'swiftpharma' => :info
+    end
+  end
+end

data/lib/transcriptic_kit/resources/project_resource.rb

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+module TranscripticKit
+  class ProjectResource < ResourceKit::Resource
+    include ErrorHandlingResourcable
+
+    resources do
+      default_handler(422) { |response| ErrorMapping.extract_single(response.body, :read) }
+      default_handler(:ok, :created) { |response| ProjectMapping.extract_single(response.body, :read) }
+      default_handler { |response| raise "Unexpected response status #{response.status}... #{response.inspect}" }
+
+      action :all do
+        verb :get
+        path 'swiftpharma/projects.json'
+        handler(200) { |response| ProjectMapping.extract_collection(response.body, :read) }
+      end
+
+      action :find do
+        verb :get
+        path ':id.json'
+        handler(200) { |response| ProjectMapping.extract_single(response.body, :read) }
+      end
+
+      action :create do
+        verb :post
+        path 'swiftpharma'
+        body { |object| ProjectMapping.representation_for(:create, object) }
+        handler(202) { |response| ProjectMapping.extract_single(response.body, :read) }
+      end
+
+      action :update do
+        verb :put
+        path 'swiftpharma/:id'
+        body { |object| ProjectMapping.representation_for(:update, object) }
+        handler(200) { |response, object| ProjectMapping.extract_into_object(object, response.body, :read) }
+      end
+    end
+  end
+end

data/lib/transcriptic_kit/version.rb

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+module TranscripticKit
+  VERSION = "0.1.0"
+end

data/lib/transcriptic_kit.rb

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+require 'active_support/all'
+require 'resource_kit'
+require 'kartograph'
+
+module TranscripticKit
+  require_relative 'transcriptic_kit/client'
+
+  # Utils
+  # autoload :PaginatedResource, 'droplet_kit/paginated_resource'
+  require_relative 'transcriptic_kit/error_handling_resourcable'
+
+  # Models
+  require_relative 'transcriptic_kit/models/base_model'
+  require_relative 'transcriptic_kit/models/project'
+  require_relative 'transcriptic_kit/models/organization'
+
+  # Resources
+  require_relative 'transcriptic_kit/resources/project_resource'
+  require_relative 'transcriptic_kit/resources/organization_resource'
+
+  # JSON Maps
+  require_relative 'transcriptic_kit/mappings/project_mapping'
+  require_relative 'transcriptic_kit/mappings/organization_mapping'
+
+  # Errors
+  require_relative 'transcriptic_kit/mappings/error_mapping'
+  # autoload :ErrorHandlingResourcable, 'transcriptic_kit/mappings/error_mapping'
+  Error = Class.new(StandardError)
+  FailedCreate = Class.new(TranscripticKit::Error)
+  FailedUpdate = Class.new(TranscripticKit::Error)
+
+  class RateLimitReached < TranscripticKit::Error
+    attr_accessor :reset_at
+    attr_writer :limit, :remaining
+
+    def limit
+      @limit.to_i if @limit
+    end
+
+    def remaining
+      @remaining.to_i if @remaining
+    end
+  end
+end

data/transcriptic_kit.gemspec

@@ -0,0 +1,39 @@
+# coding: utf-8
+lib = File.expand_path('../lib', __FILE__)
+$LOAD_PATH.unshift(lib) unless $LOAD_PATH.include?(lib)
+require 'transcriptic_kit/version'
+
+Gem::Specification.new do |spec|
+  spec.name          = "transcriptic_kit"
+  spec.version       = TranscripticKit::VERSION
+  spec.authors       = ["Ben Miles"]
+  spec.email         = ["ben.miles2@gmail.com"]
+
+  spec.summary       = %q{TranscripticKit is a Transcriptic API client for Ruby}
+  spec.homepage      = "https://github.com/bmiles/transcriptic_kit"
+  spec.license       = "MIT"
+
+  # Prevent pushing this gem to RubyGems.org by setting 'allowed_push_host', or
+  # delete this section to allow pushing this gem to any host.
+  if spec.respond_to?(:metadata)
+    spec.metadata['allowed_push_host'] = "https://rubygems.org"
+  else
+    raise "RubyGems 2.0 or newer is required to protect against public gem pushes."
+  end
+
+  spec.files         = `git ls-files -z`.split("\x0").reject { |f| f.match(%r{^(test|spec|features)/}) }
+  spec.bindir        = "exe"
+  spec.executables   = spec.files.grep(%r{^exe/}) { |f| File.basename(f) }
+  spec.require_paths = ["lib"]
+
+  spec.add_development_dependency "bundler", "~> 1.11"
+  spec.add_development_dependency "rake", "~> 10.0"
+  spec.add_development_dependency "rspec", "~> 3.0"
+  spec.add_dependency 'virtus', '~> 1.0.5'
+  spec.add_dependency "resource_kit", '~> 0.1.5'
+  spec.add_dependency "kartograph", '~> 0.2.4'
+  spec.add_dependency "activesupport", '> 3.0', '< 5.1'
+  spec.add_dependency "faraday", '~> 0.9.2'
+
+
+end

metadata

@@ -0,0 +1,188 @@
+--- !ruby/object:Gem::Specification
+name: transcriptic_kit
+version: !ruby/object:Gem::Version
+  version: 0.1.0
+platform: ruby
+authors:
+- Ben Miles
+autorequire: 
+bindir: exe
+cert_chain: []
+date: 2016-09-22 00:00:00.000000000 Z
+dependencies:
+- !ruby/object:Gem::Dependency
+  name: bundler
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '1.11'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '1.11'
+- !ruby/object:Gem::Dependency
+  name: rake
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '10.0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '10.0'
+- !ruby/object:Gem::Dependency
+  name: rspec
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '3.0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '3.0'
+- !ruby/object:Gem::Dependency
+  name: virtus
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 1.0.5
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 1.0.5
+- !ruby/object:Gem::Dependency
+  name: resource_kit
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 0.1.5
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 0.1.5
+- !ruby/object:Gem::Dependency
+  name: kartograph
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 0.2.4
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 0.2.4
+- !ruby/object:Gem::Dependency
+  name: activesupport
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">"
+      - !ruby/object:Gem::Version
+        version: '3.0'
+    - - "<"
+      - !ruby/object:Gem::Version
+        version: '5.1'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">"
+      - !ruby/object:Gem::Version
+        version: '3.0'
+    - - "<"
+      - !ruby/object:Gem::Version
+        version: '5.1'
+- !ruby/object:Gem::Dependency
+  name: faraday
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 0.9.2
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 0.9.2
+description: 
+email:
+- ben.miles2@gmail.com
+executables: []
+extensions: []
+extra_rdoc_files: []
+files:
+- ".gitignore"
+- ".rspec"
+- ".travis.yml"
+- CODE_OF_CONDUCT.md
+- Gemfile
+- LICENSE.txt
+- README.md
+- Rakefile
+- bin/console
+- bin/setup
+- example.rb
+- lib/transcriptic_kit.rb
+- lib/transcriptic_kit/client.rb
+- lib/transcriptic_kit/configuration.rb
+- lib/transcriptic_kit/error_handling_resourcable.rb
+- lib/transcriptic_kit/mappings/error_mapping.rb
+- lib/transcriptic_kit/mappings/organization_mapping.rb
+- lib/transcriptic_kit/mappings/project_mapping.rb
+- lib/transcriptic_kit/models/base_model.rb
+- lib/transcriptic_kit/models/organization.rb
+- lib/transcriptic_kit/models/project.rb
+- lib/transcriptic_kit/resources/organization_resource.rb
+- lib/transcriptic_kit/resources/project_resource.rb
+- lib/transcriptic_kit/version.rb
+- transcriptic_kit.gemspec
+homepage: https://github.com/bmiles/transcriptic_kit
+licenses:
+- MIT
+metadata:
+  allowed_push_host: https://rubygems.org
+post_install_message: 
+rdoc_options: []
+require_paths:
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '0'
+required_rubygems_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '0'
+requirements: []
+rubyforge_project: 
+rubygems_version: 2.4.8
+signing_key: 
+specification_version: 4
+summary: TranscripticKit is a Transcriptic API client for Ruby
+test_files: []