transcriptic 0.1.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- data/bin/transcriptic +12 -0
- data/lib/transcriptic.rb +3 -0
- data/lib/transcriptic/api.rb +73 -0
- data/lib/transcriptic/api/errors.rb +24 -0
- data/lib/transcriptic/api/sequences.rb +33 -0
- data/lib/transcriptic/api/version.rb +5 -0
- data/lib/transcriptic/auth.rb +223 -0
- data/lib/transcriptic/cli.rb +12 -0
- data/lib/transcriptic/client.rb +332 -0
- data/lib/transcriptic/command.rb +233 -0
- data/lib/transcriptic/command/analyze.rb +20 -0
- data/lib/transcriptic/command/base.rb +195 -0
- data/lib/transcriptic/command/console.rb +10 -0
- data/lib/transcriptic/command/data.rb +8 -0
- data/lib/transcriptic/command/help.rb +124 -0
- data/lib/transcriptic/command/history.rb +8 -0
- data/lib/transcriptic/command/login.rb +35 -0
- data/lib/transcriptic/command/run.rb +60 -0
- data/lib/transcriptic/command/sequences.rb +45 -0
- data/lib/transcriptic/command/status.rb +17 -0
- data/lib/transcriptic/helpers.rb +311 -0
- data/lib/transcriptic/version.rb +3 -0
- data/lib/vendor/transcriptic/okjson.rb +557 -0
- metadata +161 -0
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# Copyright 2011 Keith Rarick
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#
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# Permission is hereby granted, free of charge, to any person obtaining a copy
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# of this software and associated documentation files (the "Software"), to deal
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# in the Software without restriction, including without limitation the rights
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# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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# copies of the Software, and to permit persons to whom the Software is
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# furnished to do so, subject to the following conditions:
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#
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# The above copyright notice and this permission notice shall be included in
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# all copies or substantial portions of the Software.
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#
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# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
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# THE SOFTWARE.
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# See https://github.com/kr/okjson for updates.
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require 'stringio'
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# Some parts adapted from
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# http://golang.org/src/pkg/json/decode.go and
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# http://golang.org/src/pkg/utf8/utf8.go
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module Transcriptic
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module OkJson
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extend self
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class ParserError < ::StandardError; end
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# Decodes a json document in string s and
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# returns the corresponding ruby value.
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# String s must be valid UTF-8. If you have
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# a string in some other encoding, convert
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# it first.
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#
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# String values in the resulting structure
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# will be UTF-8.
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def decode(s)
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ts = lex(s)
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v, ts = textparse(ts)
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if ts.length > 0
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raise Heroku::OkJson::ParserError, 'trailing garbage'
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end
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v
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end
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# Parses a "json text" in the sense of RFC 4627.
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# Returns the parsed value and any trailing tokens.
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# Note: this is almost the same as valparse,
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# except that it does not accept atomic values.
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def textparse(ts)
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if ts.length < 0
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raise Heroku::OkJson::ParserError, 'empty'
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end
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typ, _, val = ts[0]
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case typ
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when '{' then objparse(ts)
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when '[' then arrparse(ts)
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else valparse(ts)
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end
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end
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# Parses a "value" in the sense of RFC 4627.
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# Returns the parsed value and any trailing tokens.
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def valparse(ts)
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if ts.length < 0
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raise Heroku::OkJson::ParserError, 'empty'
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end
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typ, _, val = ts[0]
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case typ
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when '{' then objparse(ts)
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when '[' then arrparse(ts)
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when :val,:str then [val, ts[1..-1]]
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else
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raise Heroku::OkJson::ParserError, "unexpected #{val.inspect}"
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end
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end
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# Parses an "object" in the sense of RFC 4627.
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# Returns the parsed value and any trailing tokens.
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def objparse(ts)
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ts = eat('{', ts)
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obj = {}
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if ts[0][0] == '}'
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return obj, ts[1..-1]
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end
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k, v, ts = pairparse(ts)
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obj[k] = v
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if ts[0][0] == '}'
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return obj, ts[1..-1]
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end
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loop do
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ts = eat(',', ts)
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k, v, ts = pairparse(ts)
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obj[k] = v
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if ts[0][0] == '}'
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return obj, ts[1..-1]
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end
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end
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end
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# Parses a "member" in the sense of RFC 4627.
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# Returns the parsed value and any trailing tokens.
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def pairparse(ts)
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(typ, _, k), ts = ts[0], ts[1..-1]
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if typ != :str
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raise Heroku::OkJson::ParserError, "unexpected #{k.inspect}"
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end
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ts = eat(':', ts)
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v, ts = valparse(ts)
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[k, v, ts]
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end
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# Parses an "array" in the sense of RFC 4627.
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# Returns the parsed value and any trailing tokens.
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def arrparse(ts)
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ts = eat('[', ts)
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arr = []
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if ts[0][0] == ']'
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return arr, ts[1..-1]
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end
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v, ts = valparse(ts)
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arr << v
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if ts[0][0] == ']'
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return arr, ts[1..-1]
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end
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loop do
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ts = eat(',', ts)
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v, ts = valparse(ts)
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arr << v
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if ts[0][0] == ']'
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return arr, ts[1..-1]
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end
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end
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end
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def eat(typ, ts)
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if ts[0][0] != typ
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raise Heroku::OkJson::ParserError, "expected #{typ} (got #{ts[0].inspect})"
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end
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ts[1..-1]
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end
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# Sans s and returns a list of json tokens,
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# excluding white space (as defined in RFC 4627).
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def lex(s)
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ts = []
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while s.length > 0
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typ, lexeme, val = tok(s)
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if typ == nil
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raise Heroku::OkJson::ParserError, "invalid character at #{s[0,10].inspect}"
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end
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if typ != :space
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ts << [typ, lexeme, val]
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end
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s = s[lexeme.length..-1]
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end
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ts
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end
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# Scans the first token in s and
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# returns a 3-element list, or nil
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# if no such token exists.
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#
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# The first list element is one of
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# '{', '}', ':', ',', '[', ']',
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# :val, :str, and :space.
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#
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# The second element is the lexeme.
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#
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# The third element is the value of the
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# token for :val and :str, otherwise
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# it is the lexeme.
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def tok(s)
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case s[0]
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when ?{ then ['{', s[0,1], s[0,1]]
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when ?} then ['}', s[0,1], s[0,1]]
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when ?: then [':', s[0,1], s[0,1]]
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when ?, then [',', s[0,1], s[0,1]]
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when ?[ then ['[', s[0,1], s[0,1]]
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when ?] then [']', s[0,1], s[0,1]]
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when ?n then nulltok(s)
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when ?t then truetok(s)
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when ?f then falsetok(s)
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when ?" then strtok(s)
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when Spc then [:space, s[0,1], s[0,1]]
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when ?\t then [:space, s[0,1], s[0,1]]
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when ?\n then [:space, s[0,1], s[0,1]]
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when ?\r then [:space, s[0,1], s[0,1]]
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else numtok(s)
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end
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end
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def nulltok(s); s[0,4] == 'null' && [:val, 'null', nil] end
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def truetok(s); s[0,4] == 'true' && [:val, 'true', true] end
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def falsetok(s); s[0,5] == 'false' && [:val, 'false', false] end
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def numtok(s)
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m = /-?([1-9][0-9]+|[0-9])([.][0-9]+)?([eE][+-]?[0-9]+)?/.match(s)
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if m && m.begin(0) == 0
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if m[3] && !m[2]
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[:val, m[0], Integer(m[1])*(10**Integer(m[3][1..-1]))]
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elsif m[2]
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[:val, m[0], Float(m[0])]
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else
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[:val, m[0], Integer(m[0])]
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end
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end
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end
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def strtok(s)
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m = /"([^"\\]|\\["\/\\bfnrt]|\\u[0-9a-fA-F]{4})*"/.match(s)
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if ! m
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raise Heroku::OkJson::ParserError, "invalid string literal at #{abbrev(s)}"
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end
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[:str, m[0], unquote(m[0])]
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end
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def abbrev(s)
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t = s[0,10]
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p = t['`']
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t = t[0,p] if p
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t = t + '...' if t.length < s.length
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'`' + t + '`'
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end
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# Converts a quoted json string literal q into a UTF-8-encoded string.
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# The rules are different than for Ruby, so we cannot use eval.
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# Unquote will raise Heroku::OkJson::ParserError, an error if q contains control characters.
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def unquote(q)
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q = q[1...-1]
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a = q.dup # allocate a big enough string
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r, w = 0, 0
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while r < q.length
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c = q[r]
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case true
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when c == ?\\
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r += 1
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if r >= q.length
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raise Heroku::OkJson::ParserError, "string literal ends with a \"\\\": \"#{q}\""
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end
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case q[r]
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when ?",?\\,?/,?'
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a[w] = q[r]
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r += 1
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w += 1
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when ?b,?f,?n,?r,?t
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a[w] = Unesc[q[r]]
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r += 1
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w += 1
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when ?u
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r += 1
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uchar = begin
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hexdec4(q[r,4])
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rescue RuntimeError => e
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raise Heroku::OkJson::ParserError, "invalid escape sequence \\u#{q[r,4]}: #{e}"
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end
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r += 4
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if surrogate? uchar
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if q.length >= r+6
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uchar1 = hexdec4(q[r+2,4])
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uchar = subst(uchar, uchar1)
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if uchar != Ucharerr
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# A valid pair; consume.
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r += 6
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end
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end
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end
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w += ucharenc(a, w, uchar)
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else
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raise Heroku::OkJson::ParserError, "invalid escape char #{q[r]} in \"#{q}\""
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end
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when c == ?", c < Spc
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raise Heroku::OkJson::ParserError, "invalid character in string literal \"#{q}\""
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else
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# Copy anything else byte-for-byte.
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# Valid UTF-8 will remain valid UTF-8.
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# Invalid UTF-8 will remain invalid UTF-8.
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a[w] = c
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r += 1
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w += 1
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end
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end
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a[0,w]
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end
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def hexdec4(s)
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if s.length != 4
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raise Heroku::OkJson::ParserError, 'short'
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end
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(nibble(s[0])<<12) | (nibble(s[1])<<8) | (nibble(s[2])<<4) | nibble(s[3])
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end
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def subst(u1, u2)
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if Usurr1 <= u1 && u1 < Usurr2 && Usurr2 <= u2 && u2 < Usurr3
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return ((u1-Usurr1)<<10) | (u2-Usurr2) + Usurrself
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end
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return Ucharerr
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end
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def unsubst(u)
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if u < Usurrself || u > Umax || surrogate?(u)
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return Ucharerr, Ucharerr
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end
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u -= Usurrself
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[Usurr1 + ((u>>10)&0x3ff), Usurr2 + (u&0x3ff)]
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end
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def surrogate?(u)
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Usurr1 <= u && u < Usurr3
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end
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def nibble(c)
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case true
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when ?0 <= c && c <= ?9 then c.ord - ?0.ord
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when ?a <= c && c <= ?z then c.ord - ?a.ord + 10
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when ?A <= c && c <= ?Z then c.ord - ?A.ord + 10
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else
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raise Heroku::OkJson::ParserError, "invalid hex code #{c}"
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end
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end
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# Encodes x into a json text. It may contain only
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# Array, Hash, String, Numeric, true, false, nil.
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# (Note, this list excludes Symbol.)
|
364
|
+
# Strings contained in x must be valid UTF-8.
|
365
|
+
# Values that cannot be represented, such as
|
366
|
+
# Nan, Infinity, Symbol, and Proc, are encoded
|
367
|
+
# as null, in accordance with ECMA-262, 5th ed.
|
368
|
+
def encode(x)
|
369
|
+
case x
|
370
|
+
when Hash then objenc(x)
|
371
|
+
when Array then arrenc(x)
|
372
|
+
when String then strenc(x)
|
373
|
+
when Numeric then numenc(x)
|
374
|
+
when Symbol then strenc(x.to_s)
|
375
|
+
when true then "true"
|
376
|
+
when false then "false"
|
377
|
+
when nil then "null"
|
378
|
+
else "null"
|
379
|
+
end
|
380
|
+
end
|
381
|
+
|
382
|
+
|
383
|
+
def objenc(x)
|
384
|
+
'{' + x.map{|k,v| encode(k) + ':' + encode(v)}.join(',') + '}'
|
385
|
+
end
|
386
|
+
|
387
|
+
|
388
|
+
def arrenc(a)
|
389
|
+
'[' + a.map{|x| encode(x)}.join(',') + ']'
|
390
|
+
end
|
391
|
+
|
392
|
+
|
393
|
+
def strenc(s)
|
394
|
+
t = StringIO.new
|
395
|
+
t.putc(?")
|
396
|
+
r = 0
|
397
|
+
while r < s.length
|
398
|
+
case s[r]
|
399
|
+
when ?" then t.print('\\"')
|
400
|
+
when ?\\ then t.print('\\\\')
|
401
|
+
when ?\b then t.print('\\b')
|
402
|
+
when ?\f then t.print('\\f')
|
403
|
+
when ?\n then t.print('\\n')
|
404
|
+
when ?\r then t.print('\\r')
|
405
|
+
when ?\t then t.print('\\t')
|
406
|
+
else
|
407
|
+
c = s[r]
|
408
|
+
case true
|
409
|
+
when Spc <= c && c <= ?~
|
410
|
+
t.putc(c)
|
411
|
+
when true
|
412
|
+
u, size = uchardec(s, r)
|
413
|
+
r += size - 1 # we add one more at the bottom of the loop
|
414
|
+
if u < 0x10000
|
415
|
+
t.print('\\u')
|
416
|
+
hexenc4(t, u)
|
417
|
+
else
|
418
|
+
u1, u2 = unsubst(u)
|
419
|
+
t.print('\\u')
|
420
|
+
hexenc4(t, u1)
|
421
|
+
t.print('\\u')
|
422
|
+
hexenc4(t, u2)
|
423
|
+
end
|
424
|
+
else
|
425
|
+
# invalid byte; skip it
|
426
|
+
end
|
427
|
+
end
|
428
|
+
r += 1
|
429
|
+
end
|
430
|
+
t.putc(?")
|
431
|
+
t.string
|
432
|
+
end
|
433
|
+
|
434
|
+
|
435
|
+
def hexenc4(t, u)
|
436
|
+
t.putc(Hex[(u>>12)&0xf])
|
437
|
+
t.putc(Hex[(u>>8)&0xf])
|
438
|
+
t.putc(Hex[(u>>4)&0xf])
|
439
|
+
t.putc(Hex[u&0xf])
|
440
|
+
end
|
441
|
+
|
442
|
+
|
443
|
+
def numenc(x)
|
444
|
+
if x.nan? || x.infinite?
|
445
|
+
return 'null'
|
446
|
+
end rescue nil
|
447
|
+
"#{x}"
|
448
|
+
end
|
449
|
+
|
450
|
+
|
451
|
+
# Decodes unicode character u from UTF-8
|
452
|
+
# bytes in string s at position i.
|
453
|
+
# Returns u and the number of bytes read.
|
454
|
+
def uchardec(s, i)
|
455
|
+
n = s.length - i
|
456
|
+
return [Ucharerr, 1] if n < 1
|
457
|
+
|
458
|
+
c0 = s[i].ord
|
459
|
+
|
460
|
+
# 1-byte, 7-bit sequence?
|
461
|
+
if c0 < Utagx
|
462
|
+
return [c0, 1]
|
463
|
+
end
|
464
|
+
|
465
|
+
# unexpected continuation byte?
|
466
|
+
return [Ucharerr, 1] if c0 < Utag2
|
467
|
+
|
468
|
+
# need continuation byte
|
469
|
+
return [Ucharerr, 1] if n < 2
|
470
|
+
c1 = s[i+1].ord
|
471
|
+
return [Ucharerr, 1] if c1 < Utagx || Utag2 <= c1
|
472
|
+
|
473
|
+
# 2-byte, 11-bit sequence?
|
474
|
+
if c0 < Utag3
|
475
|
+
u = (c0&Umask2)<<6 | (c1&Umaskx)
|
476
|
+
return [Ucharerr, 1] if u <= Uchar1max
|
477
|
+
return [u, 2]
|
478
|
+
end
|
479
|
+
|
480
|
+
# need second continuation byte
|
481
|
+
return [Ucharerr, 1] if n < 3
|
482
|
+
c2 = s[i+2].ord
|
483
|
+
return [Ucharerr, 1] if c2 < Utagx || Utag2 <= c2
|
484
|
+
|
485
|
+
# 3-byte, 16-bit sequence?
|
486
|
+
if c0 < Utag4
|
487
|
+
u = (c0&Umask3)<<12 | (c1&Umaskx)<<6 | (c2&Umaskx)
|
488
|
+
return [Ucharerr, 1] if u <= Uchar2max
|
489
|
+
return [u, 3]
|
490
|
+
end
|
491
|
+
|
492
|
+
# need third continuation byte
|
493
|
+
return [Ucharerr, 1] if n < 4
|
494
|
+
c3 = s[i+3].ord
|
495
|
+
return [Ucharerr, 1] if c3 < Utagx || Utag2 <= c3
|
496
|
+
|
497
|
+
# 4-byte, 21-bit sequence?
|
498
|
+
if c0 < Utag5
|
499
|
+
u = (c0&Umask4)<<18 | (c1&Umaskx)<<12 | (c2&Umaskx)<<6 | (c3&Umaskx)
|
500
|
+
return [Ucharerr, 1] if u <= Uchar3max
|
501
|
+
return [u, 4]
|
502
|
+
end
|
503
|
+
|
504
|
+
return [Ucharerr, 1]
|
505
|
+
end
|
506
|
+
|
507
|
+
|
508
|
+
# Encodes unicode character u as UTF-8
|
509
|
+
# bytes in string a at position i.
|
510
|
+
# Returns the number of bytes written.
|
511
|
+
def ucharenc(a, i, u)
|
512
|
+
case true
|
513
|
+
when u <= Uchar1max
|
514
|
+
a[i] = (u & 0xff).chr
|
515
|
+
1
|
516
|
+
when u <= Uchar2max
|
517
|
+
a[i+0] = (Utag2 | ((u>>6)&0xff)).chr
|
518
|
+
a[i+1] = (Utagx | (u&Umaskx)).chr
|
519
|
+
2
|
520
|
+
when u <= Uchar3max
|
521
|
+
a[i+0] = (Utag3 | ((u>>12)&0xff)).chr
|
522
|
+
a[i+1] = (Utagx | ((u>>6)&Umaskx)).chr
|
523
|
+
a[i+2] = (Utagx | (u&Umaskx)).chr
|
524
|
+
3
|
525
|
+
else
|
526
|
+
a[i+0] = (Utag4 | ((u>>18)&0xff)).chr
|
527
|
+
a[i+1] = (Utagx | ((u>>12)&Umaskx)).chr
|
528
|
+
a[i+2] = (Utagx | ((u>>6)&Umaskx)).chr
|
529
|
+
a[i+3] = (Utagx | (u&Umaskx)).chr
|
530
|
+
4
|
531
|
+
end
|
532
|
+
end
|
533
|
+
|
534
|
+
Utagx = 0x80 # 1000 0000
|
535
|
+
Utag2 = 0xc0 # 1100 0000
|
536
|
+
Utag3 = 0xe0 # 1110 0000
|
537
|
+
Utag4 = 0xf0 # 1111 0000
|
538
|
+
Utag5 = 0xF8 # 1111 1000
|
539
|
+
Umaskx = 0x3f # 0011 1111
|
540
|
+
Umask2 = 0x1f # 0001 1111
|
541
|
+
Umask3 = 0x0f # 0000 1111
|
542
|
+
Umask4 = 0x07 # 0000 0111
|
543
|
+
Uchar1max = (1<<7) - 1
|
544
|
+
Uchar2max = (1<<11) - 1
|
545
|
+
Uchar3max = (1<<16) - 1
|
546
|
+
Ucharerr = 0xFFFD # unicode "replacement char"
|
547
|
+
Usurrself = 0x10000
|
548
|
+
Usurr1 = 0xd800
|
549
|
+
Usurr2 = 0xdc00
|
550
|
+
Usurr3 = 0xe000
|
551
|
+
Umax = 0x10ffff
|
552
|
+
|
553
|
+
Spc = ' '[0]
|
554
|
+
Unesc = {?b=>?\b, ?f=>?\f, ?n=>?\n, ?r=>?\r, ?t=>?\t}
|
555
|
+
Hex = '0123456789abcdef'
|
556
|
+
end
|
557
|
+
end
|