traject 2.0.0-java

data/lib/traject/marc_reader.rb

@@ -0,0 +1,89 @@
+require 'marc'
+require 'traject/ndj_reader'
+
+# `Traject::MarcReader` uses pure ruby marc gem to parse MARC records. It
+# can read MARC ISO 2709 ('binary'), MARC-XML, and Marc-in-json (newline-delimited-json).
+#
+# Marc4JReader is an alternative to this class, powered by Marc4J. You may be interested
+# in comparing for performance, under your particular use case. To use it, you'll need
+# the gem traject-marc4j_reader.
+#
+# By default assumes binary MARC encoding, please set marc_source.type setting
+# for XML or json. If binary, please set marc_source.encoding with char encoding. 
+#
+# ## Settings
+
+# * "marc_source.type":  serialization type. default 'binary'
+#       * "binary". standard ISO 2709 "binary" MARC format, 
+#           will use ruby-marc MARC::Reader (Note, if you are using
+#          type 'binary', you probably want to also set 'marc_source.encoding')
+#       * "xml", MarcXML, will use ruby-marc MARC::XMLReader
+#       * "json" The "marc-in-json" format, encoded as newline-separated
+#         json. (synonym 'ndj'). A simplistic newline-separated json, with no comments
+#         allowed, and no unescpaed internal newlines allowed in the json
+#         objects -- we just read line by line, and assume each line is a
+#         marc-in-json. http://dilettantes.code4lib.org/blog/2010/09/a-proposal-to-serialize-marc-in-json/
+#         will use Traject::NDJReader which uses MARC::Record.new_from_hash. 
+# * "marc_source.encoding": Only used for marc_source.type 'binary', character encoding
+#         of the source marc records. Can be any
+#         encoding recognized by ruby, OR 'MARC-8'.  For 'MARC-8', content will
+#         be transcoded (by ruby-marc) to UTF-8 in internal MARC::Record Strings. 
+#         Default nil, meaning let MARC::Reader use it's default, which will
+#         probably be Encoding.default_internal, which will probably be UTF-8. 
+#         Right now Traject::MarcReader is hard-coded to transcode to UTF-8 as
+#         an internal encoding. 
+# * "marc_reader.xml_parser": For XML type, which XML parser to tell Marc::Reader
+#         to use. Anything recognized by [Marc::Reader :parser
+#         argument](http://rdoc.info/github/ruby-marc/ruby-marc/MARC/XMLReader).
+#         By default, asks Marc::Reader to take
+#         it's best guess as to highest performance available
+#         installed option. Probably best to leave as default.
+#
+# ## Example
+#
+# In a configuration file:
+#
+#     require 'traject/marc_reader'
+#
+#     settings do
+#       provide "reader_class_name", "Traject::MarcReader"
+#       provide "marc_source.type", "xml"
+#     end
+#
+class Traject::MarcReader
+  include Enumerable
+
+  attr_reader :settings, :input_stream
+
+  @@best_xml_parser = MARC::XMLReader.best_available
+
+  def initialize(input_stream, settings)
+    @settings = Traject::Indexer::Settings.new settings
+    @input_stream = input_stream
+  end
+
+  # Creates proper kind of ruby MARC reader, depending
+  # on settings or guesses.
+  def internal_reader
+    unless defined? @internal_reader
+      @internal_reader =
+        case settings["marc_source.type"]
+        when "xml"
+          parser = settings["marc_reader.xml_parser"] || @@best_xml_parser
+          MARC::XMLReader.new(self.input_stream, :parser=> parser)
+        when 'json'
+          Traject::NDJReader.new(self.input_stream, settings)
+        else
+          args = { :invalid => :replace }
+          args[:external_encoding] = settings["marc_source.encoding"]          
+          MARC::Reader.new(self.input_stream, args)
+        end
+    end
+    return @internal_reader
+  end
+
+  def each(*args, &block)
+    self.internal_reader.each(*args, &block)
+  end
+
+end

data/lib/traject/mock_reader.rb

@@ -0,0 +1,97 @@
+# Encoding: utf-8
+require 'marc'
+require 'json'
+module Traject
+
+  # A mock reader, designed to do almost no work during a run to provide better benchmarking
+  #
+  # It pulls in 20 records from the end of this file and then just returns
+  # them over and over again, up to the specified limit
+  #
+  # Specify in a config files as follows:
+  #
+  #     require 'traject/mock_writer'
+  #     require 'traject/mock_reader'
+  #
+  #     settings do
+  #       store "reader_class_name", "Traject::MockReader"
+  #       store "writer_class_name", "Traject::MockWriter"
+  #       store "mock_reader.limit", 4_000 # default is 10_000
+  #     end
+  class MockReader
+
+    attr_accessor :limit
+
+    # @param [Ignored] input_stream (ignored)
+    # @param [Hash] settings (looks only for an integer in 'mock_reader.limit')
+    def initialize(input_stream, settings = {})
+      @limit = (settings["mock_reader.limit"]  || 10_000).to_i
+
+      @records = load_ndjson(File.open(__FILE__))
+
+      # freeze it immutable for thread safety and performance
+      @records.each {|r| r.fields.freeze}
+    end
+
+    # newline delimited json, assuming no internal unescaped
+    # newlines in json too!
+    def load_ndjson(file_io)
+      records = []
+
+      this_file_iter = file_io.each_line
+
+      while true
+        line = this_file_iter.next
+        break if line =~ /^\_\_END\_\_/
+      end
+
+      begin
+        while true
+          json = this_file_iter.next
+          next unless json =~ /\S/
+          records << MARC::Record.new_from_hash(JSON.parse(json))
+        end
+      rescue StopIteration
+      end
+
+      return records
+    end
+
+
+    def each
+      unless block_given?
+        enum_for(:each)
+      else
+        size = @records.size
+        @limit.times do |i|
+          yield @records[i % size]
+        end
+      end
+    end
+
+
+  end
+end
+
+__END__
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+

data/lib/traject/ndj_reader.rb

@@ -0,0 +1,40 @@
+require 'marc'
+require 'json'
+require 'zlib'
+
+
+# Read newline-delimited JSON file, where each line is a marc-in-json string.
+# UTF-8 encoding is required.
+
+class Traject::NDJReader
+  include Enumerable
+
+  def initialize(input_stream, settings)
+    @settings = settings
+    @input_stream = input_stream
+    if @settings['command_line.filename'] =~ /\.gz$/
+      @input_stream = Zlib::GzipReader.new(@input_stream, :external_encoding => "UTF-8")
+    end
+  end
+
+  def logger
+    @logger ||= (@settings[:logger] || Yell.new(STDERR, :level => "gt.fatal")) # null logger)
+  end
+
+  def each
+    unless block_given?
+      return enum_for(:each)
+    end
+
+    @input_stream.each_with_index do |json, i|
+      begin
+        yield MARC::Record.new_from_hash(JSON.parse(json))
+      rescue Exception => e
+        self.logger.error("Problem with JSON record on line #{i}: #{e.message}")
+      end
+    end
+  end
+
+end
+
+

data/lib/traject/null_writer.rb

@@ -0,0 +1,22 @@
+# A Null writer that does absolutely nothing with records given to it,
+# just drops em on the floor.
+class Traject::NullWriter
+  attr_reader :settings
+
+  def initialize(argSettings)
+  end
+
+
+  def serialize(context)
+    # null
+  end
+
+  def put(context)
+    # null
+  end
+
+  def close
+    # null
+  end
+
+end

data/lib/traject/qualified_const_get.rb

@@ -0,0 +1,40 @@
+# From http://redcorundum.blogspot.com/2006/05/kernelqualifiedconstget.html
+# Adapted into a module, rather than monkey patching it into Kernel
+#
+# Method to take a string constant name, including :: qualifications, and
+# look up the actual constant. Looks up relative to current file.
+# Respects leading ::. Etc.
+#
+#     class Something
+#       include Traject::QualifiedConstGet
+#
+#       def foo
+#         #...
+#         klass = qualified_const_get("Foo::Bar")
+#         #...
+#       end
+#     end
+module Traject::QualifiedConstGet
+
+
+  def qualified_const_get(str)
+    path = str.to_s.split('::')
+    from_root = path[0].empty?
+    if from_root
+      from_root = []
+      path = path[1..-1]
+    else
+      start_ns = ((Class === self)||(Module === self)) ? self : self.class
+      from_root = start_ns.to_s.split('::')
+    end
+    until from_root.empty?
+      begin
+        return (from_root+path).inject(Object) { |ns,name| ns.const_get(name) }
+      rescue NameError
+        from_root.delete_at(-1)
+      end
+    end
+    path.inject(Object) { |ns,name| ns.const_get(name) }
+  end
+
+end

data/lib/traject/solr_json_writer.rb

@@ -0,0 +1,277 @@
+require 'yell'
+
+require 'traject'
+require 'traject/util'
+require 'traject/qualified_const_get'
+require 'traject/thread_pool'
+
+require 'json'
+require 'httpclient'
+
+require 'uri'
+require 'thread'     # for Mutex/Queue
+require 'concurrent' # for atomic_fixnum
+
+# Write to Solr using the JSON interface; only works for Solr >= 3.2
+#
+# This should work under both MRI and JRuby, with JRuby getting much
+# better performance due to the threading model.
+#
+# Relevant settings
+#
+# * solr.url (optional if solr.update_url is set) The URL to the solr core to index into
+#
+# * solr.update_url: The actual update url. If unset, we'll first see if
+#   "#{solr.url}/update/json" exists, and if not use "#{solr.url}/update"
+#
+# * solr_writer.batch_size: How big a batch to send to solr. Default is 100.
+#   My tests indicate that this setting doesn't change overall index speed by a ton.
+#
+# * solr_writer.thread_pool: How many threads to use for the writer. Default is 1.
+#   Likely useful even under MRI since thread will be waiting on Solr for some time. 
+#
+# * solr_writer.max_skipped: How many records skipped due to errors before we 
+#   bail out with a fatal error? Set to -1 for unlimited skips. Default 0, 
+#   raise and abort on a single record that could not be added to Solr. 
+#
+# * solr_writer.commit_on_close: Set to true (or "true") if you want to commit at the
+#   end of the indexing run. (Old "solrj_writer.commit_on_close" supported for backwards
+#   compat only.)
+#
+# * solr_writer.commit_timeout: If commit_on_close, how long to wait for Solr before
+#   giving up as a timeout. Default 10 minutes. Solr can be slow. 
+#
+# * solr_json_writer.http_client Mainly intended for testing, set your own HTTPClient
+#   or mock object to be used for HTTP. 
+
+
+class Traject::SolrJsonWriter
+  include Traject::QualifiedConstGet
+
+  DEFAULT_MAX_SKIPPED = 0
+  DEFAULT_BATCH_SIZE  = 100
+
+  # The passed-in settings
+  attr_reader :settings, :thread_pool_size
+
+  # A queue to hold documents before sending to solr
+  attr_reader :batched_queue
+
+  def initialize(argSettings)
+    @settings = Traject::Indexer::Settings.new(argSettings)
+
+    # Set max errors
+    @max_skipped = (@settings['solr_writer.max_skipped'] || DEFAULT_MAX_SKIPPED).to_i
+    if @max_skipped < 0
+      @max_skipped = nil
+    end
+
+    @http_client = @settings["solr_json_writer.http_client"] || HTTPClient.new
+
+    @batch_size = (settings["solr_writer.batch_size"] || DEFAULT_BATCH_SIZE).to_i
+    @batch_size = 1 if @batch_size < 1
+
+    # Store error count in an AtomicInteger, so multi threads can increment
+    # it safely, if we're threaded.
+    @skipped_record_incrementer = Concurrent::AtomicFixnum.new(0)
+
+
+    # How many threads to use for the writer?
+    # if our thread pool settings are 0, it'll just create a null threadpool that
+    # executes in calling context.
+    @thread_pool_size = (@settings["solr_writer.thread_pool"] || 1).to_i
+
+    @batched_queue         = Queue.new
+    @thread_pool = Traject::ThreadPool.new(@thread_pool_size)
+
+    # old setting solrj_writer supported for backwards compat, as we make
+    # this the new default writer. 
+    @commit_on_close = (settings["solr_writer.commit_on_close"] || settings["solrj_writer.commit_on_close"]).to_s == "true"
+
+    # Figure out where to send updates
+    @solr_update_url = self.determine_solr_update_url
+
+    logger.info("   #{self.class.name} writing to '#{@solr_update_url}' in batches of #{@batch_size} with #{@thread_pool_size} bg threads")
+  end
+
+
+  # Add a single context to the queue, ready to be sent to solr
+  def put(context)
+    @thread_pool.raise_collected_exception!
+
+    @batched_queue << context
+    if @batched_queue.size >= @batch_size
+      batch = Traject::Util.drain_queue(@batched_queue)
+      @thread_pool.maybe_in_thread_pool(batch) {|batch_arg| send_batch(batch_arg) }
+    end
+  end
+
+  # Send the given batch of contexts. If something goes wrong, send
+  # them one at a time.
+  # @param [Array<Traject::Indexer::Context>] an array of contexts
+  def send_batch(batch)
+    return if batch.empty?
+    json_package = JSON.generate(batch.map { |c| c.output_hash })
+    begin
+      resp = @http_client.post @solr_update_url, json_package, "Content-type" => "application/json"
+    rescue StandardError => exception
+    end
+
+    if exception || resp.status != 200
+      error_message = exception ? 
+        Traject::Util.exception_to_log_message(exception) : 
+        "Solr response: #{resp.status}: #{resp.body}"
+
+      logger.error "Error in Solr batch add. Will retry documents individually at performance penalty: #{error_message}"
+      
+      batch.each do |c|
+        send_single(c)
+      end
+    end
+  end
+
+
+  # Send a single context to Solr, logging an error if need be
+  # @param [Traject::Indexer::Context] c The context whose document you want to send
+  def send_single(c)
+    json_package = JSON.generate([c.output_hash])
+    begin
+      resp = @http_client.post @solr_update_url, json_package, "Content-type" => "application/json"
+      # Catch Timeouts and network errors as skipped records, but otherwise
+      # allow unexpected errors to propagate up. 
+    rescue HTTPClient::TimeoutError, SocketError, Errno::ECONNREFUSED => exception
+    end
+
+    if exception || resp.status != 200
+      if exception
+        msg = Traject::Util.exception_to_log_message(e)
+      else
+        msg = "Solr error response: #{resp.status}: #{resp.body}"
+      end
+      logger.error "Could not add record #{record_id_from_context c} at source file position #{c.position}: #{msg}"
+      logger.debug(c.source_record.to_s)
+
+      @skipped_record_incrementer.increment
+      if @max_skipped and skipped_record_count > @max_skipped
+        raise RuntimeError.new("#{self.class.name}: Exceeded maximum number of skipped records (#{@max_skipped}): aborting")
+      end
+
+    end
+
+  end
+
+
+  # Get the logger from the settings, or default to an effectively null logger
+  def logger
+    settings["logger"] ||= Yell.new(STDERR, :level => "gt.fatal") # null logger
+  end
+
+  # Returns MARC 001, then a slash, then output_hash["id"] -- if both
+  # are present. Otherwise may return just one, or even an empty string. 
+  def record_id_from_context(context)
+    marc_id = context.source_record && context.source_record['001'] && context.source_record['001'].value
+    output_id = context.output_hash["id"]
+
+    return [marc_id, output_id].compact.join("/")
+  end
+
+
+  # On close, we need to (a) raise any exceptions we might have, (b) send off
+  # the last (possibly empty) batch, and (c) commit if instructed to do so
+  # via the solr_writer.commit_on_close setting.
+  def close
+    @thread_pool.raise_collected_exception!
+
+    # Finish off whatever's left. Do it in the thread pool for
+    # consistency, and to ensure expected order of operations, so
+    # it goes to the end of the queue behind any other work.
+    batch = Traject::Util.drain_queue(@batched_queue)
+    if batch.length > 0
+      @thread_pool.maybe_in_thread_pool { send_batch(batch) }
+    end
+
+    # Wait for shutdown, and time it.
+    logger.debug "#{self.class.name}: Shutting down thread pool, waiting if needed..."
+    elapsed = @thread_pool.shutdown_and_wait
+    if elapsed > 60
+      logger.warn "Waited #{elapsed} seconds for all threads, you may want to increase solr_writer.thread_pool (currently #{@settings["solr_writer.thread_pool"]})"
+    end
+    logger.debug "#{self.class.name}: Thread pool shutdown complete"
+    logger.warn "#{self.class.name}: #{skipped_record_count} skipped records" if skipped_record_count > 0
+
+    # check again now that we've waited, there could still be some
+    # that didn't show up before.
+    @thread_pool.raise_collected_exception!
+
+    # Commit if we're supposed to
+    if @commit_on_close
+      commit
+    end
+  end
+
+
+  # Send a commit
+  def commit
+    logger.info "#{self.class.name} sending commit to solr at url #{@solr_update_url}..."
+
+    original_timeout = @http_client.receive_timeout
+
+    @http_client.receive_timeout = (settings["commit_timeout"] || (10 * 60)).to_i
+
+    resp = @http_client.get(@solr_update_url, {"commit" => 'true'})
+    unless resp.status == 200
+      raise RuntimeError.new("Could not commit to Solr: #{resp.status} #{resp.body}")
+    end
+
+    @http_client.receive_timeout = original_timeout
+  end
+
+
+  # Return count of encountered skipped records. Most accurate to call
+  # it after #close, in which case it should include full count, even
+  # under async thread_pool.
+  def skipped_record_count
+    @skipped_record_incrementer.value
+  end
+
+
+  # Relatively complex logic to determine if we have a valid URL and what it is
+  def determine_solr_update_url
+    if settings['solr.update_url']
+      check_solr_update_url(settings['solr.update_url'])
+    else
+      derive_solr_update_url_from_solr_url(settings['solr.url'])
+    end
+  end
+
+
+  # If we've got a solr.update_url, make sure it's ok
+  def check_solr_update_url(url)
+    unless url =~ /^#{URI::regexp}$/
+      raise ArgumentError.new("#{self.class.name} setting `solr.update_url` doesn't look like a URL: `#{url}`")
+    end
+    url
+  end
+
+  def derive_solr_update_url_from_solr_url(url)
+    # Nil? Then we bail
+    if url.nil?
+      raise ArgumentError.new("#{self.class.name}: Neither solr.update_url nor solr.url set; need at least one")
+    end
+
+    # Not a URL? Bail
+    unless url =~ /^#{URI::regexp}$/
+      raise ArgumentError.new("#{self.class.name} setting `solr.url` doesn't look like a URL: `#{url}`")
+    end
+
+    # First, try the /update/json handler
+    candidate = [url.chomp('/'), 'update', 'json'].join('/')
+    resp      = @http_client.get(candidate)
+    if resp.status == 404
+      candidate = [url.chomp('/'), 'update'].join('/')
+    end
+    candidate
+  end
+
+
+end