toxbank-investigation 0.0.2pre

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Files changed (42) hide show
  1. data/.gitignore +11 -0
  2. data/Gemfile +12 -0
  3. data/Gemfile.lock +111 -0
  4. data/LICENSE +674 -0
  5. data/README +34 -0
  6. data/Rakefile +14 -0
  7. data/application.rb +284 -0
  8. data/bin/toxbank-investigation-install +76 -0
  9. data/config.ru +6 -0
  10. data/config/production.rb +9 -0
  11. data/java/config/isa_configurator/cellcount_flowcytometry.xml +1 -0
  12. data/java/config/isa_configurator/cellsorting_flowcyt.xml +5 -0
  13. data/java/config/isa_configurator/clinical_chemistry.xml +1 -0
  14. data/java/config/isa_configurator/copynumvariation_micro.xml +1 -0
  15. data/java/config/isa_configurator/dnamethylation_micro.xml +1 -0
  16. data/java/config/isa_configurator/dnamethylation_seq.xml +1 -0
  17. data/java/config/isa_configurator/envgen_survey_seq.xml +1 -0
  18. data/java/config/isa_configurator/genome_seq.xml +1 -0
  19. data/java/config/isa_configurator/hematology.xml +1 -0
  20. data/java/config/isa_configurator/heterozygosity_micro.xml +1 -0
  21. data/java/config/isa_configurator/histology.xml +1 -0
  22. data/java/config/isa_configurator/histonemodification_seq.xml +1 -0
  23. data/java/config/isa_configurator/metaboliteprofiling_ms.xml +114 -0
  24. data/java/config/isa_configurator/metaboliteprofiling_nmr.xml +114 -0
  25. data/java/config/isa_configurator/metagenome_seq.xml +1 -0
  26. data/java/config/isa_configurator/nru_assay.xml +8 -0
  27. data/java/config/isa_configurator/ppi_detection_micro.xml +1 -0
  28. data/java/config/isa_configurator/protein_dna_binding_ident_micro.xml +1 -0
  29. data/java/config/isa_configurator/protein_dna_binding_ident_seq.xml +1 -0
  30. data/java/config/isa_configurator/protein_expression_ge.xml +101 -0
  31. data/java/config/isa_configurator/protein_expression_micro.xml +1 -0
  32. data/java/config/isa_configurator/protein_expression_ms.xml +1 -0
  33. data/java/config/isa_configurator/proteinident_ms.xml +1 -0
  34. data/java/config/isa_configurator/snpanalysis_micro.xml +1 -0
  35. data/java/config/isa_configurator/studySample.xml +1 -0
  36. data/java/config/isa_configurator/tfbsident_micro.xml +1 -0
  37. data/java/config/isa_configurator/tfbsident_seq.xml +1 -0
  38. data/java/config/isa_configurator/transcription_micro.xml +1 -0
  39. data/java/config/isa_configurator/transcription_rtpcr.xml +1 -0
  40. data/java/config/isa_configurator/transcription_seq.xml +6 -0
  41. data/toxbank-investigation.gemspec +29 -0
  42. metadata +108 -0
metadata ADDED
@@ -0,0 +1,108 @@
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+ --- !ruby/object:Gem::Specification
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+ name: toxbank-investigation
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+ version: !ruby/object:Gem::Version
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+ version: 0.0.2pre
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+ prerelease: 5
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+ platform: ruby
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+ authors:
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+ - Christoph Helma
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+ - Denis Gebele
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+ - Micha Rautenberg
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+ autorequire:
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+ bindir: bin
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+ cert_chain: []
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+ date: 2012-04-02 00:00:00.000000000 Z
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+ dependencies:
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+ - !ruby/object:Gem::Dependency
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+ name: opentox-server
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+ requirement: &78865690 !ruby/object:Gem::Requirement
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+ none: false
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+ requirements:
21
+ - - ! '>='
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+ - !ruby/object:Gem::Version
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+ version: '0'
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+ type: :runtime
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+ prerelease: false
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+ version_requirements: *78865690
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+ description: Toxbank investigation service
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+ email:
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+ - helma@in-silico.ch
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+ - gebele@in-silico.ch
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+ - rautenenberg@in-silico.ch
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+ executables:
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+ - toxbank-investigation-install
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+ extensions: []
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+ extra_rdoc_files: []
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+ files:
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+ - .gitignore
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+ - Gemfile
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+ - Gemfile.lock
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+ - LICENSE
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+ - README
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+ - Rakefile
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+ - application.rb
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+ - bin/toxbank-investigation-install
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+ - config.ru
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+ - config/production.rb
47
+ - java/config/isa_configurator/cellcount_flowcytometry.xml
48
+ - java/config/isa_configurator/cellsorting_flowcyt.xml
49
+ - java/config/isa_configurator/clinical_chemistry.xml
50
+ - java/config/isa_configurator/copynumvariation_micro.xml
51
+ - java/config/isa_configurator/dnamethylation_micro.xml
52
+ - java/config/isa_configurator/dnamethylation_seq.xml
53
+ - java/config/isa_configurator/envgen_survey_seq.xml
54
+ - java/config/isa_configurator/genome_seq.xml
55
+ - java/config/isa_configurator/hematology.xml
56
+ - java/config/isa_configurator/heterozygosity_micro.xml
57
+ - java/config/isa_configurator/histology.xml
58
+ - java/config/isa_configurator/histonemodification_seq.xml
59
+ - java/config/isa_configurator/metaboliteprofiling_ms.xml
60
+ - java/config/isa_configurator/metaboliteprofiling_nmr.xml
61
+ - java/config/isa_configurator/metagenome_seq.xml
62
+ - java/config/isa_configurator/nru_assay.xml
63
+ - java/config/isa_configurator/ppi_detection_micro.xml
64
+ - java/config/isa_configurator/protein_dna_binding_ident_micro.xml
65
+ - java/config/isa_configurator/protein_dna_binding_ident_seq.xml
66
+ - java/config/isa_configurator/protein_expression_ge.xml
67
+ - java/config/isa_configurator/protein_expression_micro.xml
68
+ - java/config/isa_configurator/protein_expression_ms.xml
69
+ - java/config/isa_configurator/proteinident_ms.xml
70
+ - java/config/isa_configurator/snpanalysis_micro.xml
71
+ - java/config/isa_configurator/studySample.xml
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+ - java/config/isa_configurator/tfbsident_micro.xml
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+ - java/config/isa_configurator/tfbsident_seq.xml
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+ - java/config/isa_configurator/transcription_micro.xml
75
+ - java/config/isa_configurator/transcription_rtpcr.xml
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+ - java/config/isa_configurator/transcription_seq.xml
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+ - toxbank-investigation.gemspec
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+ homepage: http://github.com/ToxBank/toxbank-investigation
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+ licenses:
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+ - GPL-3
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+ post_install_message: Run toxbank-investigation-install to set up your service
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+ rdoc_options: []
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+ require_paths:
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+ - lib
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+ required_ruby_version: !ruby/object:Gem::Requirement
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+ none: false
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+ requirements:
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+ - - ! '>='
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+ - !ruby/object:Gem::Version
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+ version: 1.9.2
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+ required_rubygems_version: !ruby/object:Gem::Requirement
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+ none: false
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+ requirements:
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+ - - ! '>'
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+ - !ruby/object:Gem::Version
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+ version: 1.3.1
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+ requirements:
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+ - git
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+ - zip
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+ - java
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+ - curl
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+ - wget
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+ rubyforge_project: toxbank-investigation
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+ rubygems_version: 1.8.11
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+ signing_key:
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+ specification_version: 3
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+ summary: Toxbank investigation service
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+ test_files: []