toxbank-investigation 0.0.2pre

Sign up to get free protection for your applications and to get access to all the features.
Files changed (42) hide show
  1. data/.gitignore +11 -0
  2. data/Gemfile +12 -0
  3. data/Gemfile.lock +111 -0
  4. data/LICENSE +674 -0
  5. data/README +34 -0
  6. data/Rakefile +14 -0
  7. data/application.rb +284 -0
  8. data/bin/toxbank-investigation-install +76 -0
  9. data/config.ru +6 -0
  10. data/config/production.rb +9 -0
  11. data/java/config/isa_configurator/cellcount_flowcytometry.xml +1 -0
  12. data/java/config/isa_configurator/cellsorting_flowcyt.xml +5 -0
  13. data/java/config/isa_configurator/clinical_chemistry.xml +1 -0
  14. data/java/config/isa_configurator/copynumvariation_micro.xml +1 -0
  15. data/java/config/isa_configurator/dnamethylation_micro.xml +1 -0
  16. data/java/config/isa_configurator/dnamethylation_seq.xml +1 -0
  17. data/java/config/isa_configurator/envgen_survey_seq.xml +1 -0
  18. data/java/config/isa_configurator/genome_seq.xml +1 -0
  19. data/java/config/isa_configurator/hematology.xml +1 -0
  20. data/java/config/isa_configurator/heterozygosity_micro.xml +1 -0
  21. data/java/config/isa_configurator/histology.xml +1 -0
  22. data/java/config/isa_configurator/histonemodification_seq.xml +1 -0
  23. data/java/config/isa_configurator/metaboliteprofiling_ms.xml +114 -0
  24. data/java/config/isa_configurator/metaboliteprofiling_nmr.xml +114 -0
  25. data/java/config/isa_configurator/metagenome_seq.xml +1 -0
  26. data/java/config/isa_configurator/nru_assay.xml +8 -0
  27. data/java/config/isa_configurator/ppi_detection_micro.xml +1 -0
  28. data/java/config/isa_configurator/protein_dna_binding_ident_micro.xml +1 -0
  29. data/java/config/isa_configurator/protein_dna_binding_ident_seq.xml +1 -0
  30. data/java/config/isa_configurator/protein_expression_ge.xml +101 -0
  31. data/java/config/isa_configurator/protein_expression_micro.xml +1 -0
  32. data/java/config/isa_configurator/protein_expression_ms.xml +1 -0
  33. data/java/config/isa_configurator/proteinident_ms.xml +1 -0
  34. data/java/config/isa_configurator/snpanalysis_micro.xml +1 -0
  35. data/java/config/isa_configurator/studySample.xml +1 -0
  36. data/java/config/isa_configurator/tfbsident_micro.xml +1 -0
  37. data/java/config/isa_configurator/tfbsident_seq.xml +1 -0
  38. data/java/config/isa_configurator/transcription_micro.xml +1 -0
  39. data/java/config/isa_configurator/transcription_rtpcr.xml +1 -0
  40. data/java/config/isa_configurator/transcription_seq.xml +6 -0
  41. data/toxbank-investigation.gemspec +29 -0
  42. metadata +108 -0
metadata ADDED
@@ -0,0 +1,108 @@
1
+ --- !ruby/object:Gem::Specification
2
+ name: toxbank-investigation
3
+ version: !ruby/object:Gem::Version
4
+ version: 0.0.2pre
5
+ prerelease: 5
6
+ platform: ruby
7
+ authors:
8
+ - Christoph Helma
9
+ - Denis Gebele
10
+ - Micha Rautenberg
11
+ autorequire:
12
+ bindir: bin
13
+ cert_chain: []
14
+ date: 2012-04-02 00:00:00.000000000 Z
15
+ dependencies:
16
+ - !ruby/object:Gem::Dependency
17
+ name: opentox-server
18
+ requirement: &78865690 !ruby/object:Gem::Requirement
19
+ none: false
20
+ requirements:
21
+ - - ! '>='
22
+ - !ruby/object:Gem::Version
23
+ version: '0'
24
+ type: :runtime
25
+ prerelease: false
26
+ version_requirements: *78865690
27
+ description: Toxbank investigation service
28
+ email:
29
+ - helma@in-silico.ch
30
+ - gebele@in-silico.ch
31
+ - rautenenberg@in-silico.ch
32
+ executables:
33
+ - toxbank-investigation-install
34
+ extensions: []
35
+ extra_rdoc_files: []
36
+ files:
37
+ - .gitignore
38
+ - Gemfile
39
+ - Gemfile.lock
40
+ - LICENSE
41
+ - README
42
+ - Rakefile
43
+ - application.rb
44
+ - bin/toxbank-investigation-install
45
+ - config.ru
46
+ - config/production.rb
47
+ - java/config/isa_configurator/cellcount_flowcytometry.xml
48
+ - java/config/isa_configurator/cellsorting_flowcyt.xml
49
+ - java/config/isa_configurator/clinical_chemistry.xml
50
+ - java/config/isa_configurator/copynumvariation_micro.xml
51
+ - java/config/isa_configurator/dnamethylation_micro.xml
52
+ - java/config/isa_configurator/dnamethylation_seq.xml
53
+ - java/config/isa_configurator/envgen_survey_seq.xml
54
+ - java/config/isa_configurator/genome_seq.xml
55
+ - java/config/isa_configurator/hematology.xml
56
+ - java/config/isa_configurator/heterozygosity_micro.xml
57
+ - java/config/isa_configurator/histology.xml
58
+ - java/config/isa_configurator/histonemodification_seq.xml
59
+ - java/config/isa_configurator/metaboliteprofiling_ms.xml
60
+ - java/config/isa_configurator/metaboliteprofiling_nmr.xml
61
+ - java/config/isa_configurator/metagenome_seq.xml
62
+ - java/config/isa_configurator/nru_assay.xml
63
+ - java/config/isa_configurator/ppi_detection_micro.xml
64
+ - java/config/isa_configurator/protein_dna_binding_ident_micro.xml
65
+ - java/config/isa_configurator/protein_dna_binding_ident_seq.xml
66
+ - java/config/isa_configurator/protein_expression_ge.xml
67
+ - java/config/isa_configurator/protein_expression_micro.xml
68
+ - java/config/isa_configurator/protein_expression_ms.xml
69
+ - java/config/isa_configurator/proteinident_ms.xml
70
+ - java/config/isa_configurator/snpanalysis_micro.xml
71
+ - java/config/isa_configurator/studySample.xml
72
+ - java/config/isa_configurator/tfbsident_micro.xml
73
+ - java/config/isa_configurator/tfbsident_seq.xml
74
+ - java/config/isa_configurator/transcription_micro.xml
75
+ - java/config/isa_configurator/transcription_rtpcr.xml
76
+ - java/config/isa_configurator/transcription_seq.xml
77
+ - toxbank-investigation.gemspec
78
+ homepage: http://github.com/ToxBank/toxbank-investigation
79
+ licenses:
80
+ - GPL-3
81
+ post_install_message: Run toxbank-investigation-install to set up your service
82
+ rdoc_options: []
83
+ require_paths:
84
+ - lib
85
+ required_ruby_version: !ruby/object:Gem::Requirement
86
+ none: false
87
+ requirements:
88
+ - - ! '>='
89
+ - !ruby/object:Gem::Version
90
+ version: 1.9.2
91
+ required_rubygems_version: !ruby/object:Gem::Requirement
92
+ none: false
93
+ requirements:
94
+ - - ! '>'
95
+ - !ruby/object:Gem::Version
96
+ version: 1.3.1
97
+ requirements:
98
+ - git
99
+ - zip
100
+ - java
101
+ - curl
102
+ - wget
103
+ rubyforge_project: toxbank-investigation
104
+ rubygems_version: 1.8.11
105
+ signing_key:
106
+ specification_version: 3
107
+ summary: Toxbank investigation service
108
+ test_files: []