toxbank-investigation 0.0.1pre-x86-linux

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  1. data/.gitignore +11 -0
  2. data/Gemfile +7 -0
  3. data/Gemfile.lock +101 -0
  4. data/LICENSE +674 -0
  5. data/README +14 -0
  6. data/Rakefile +31 -0
  7. data/application.rb +246 -0
  8. data/bin/toxbank-investigation-install +76 -0
  9. data/config/production.rb +9 -0
  10. data/config.ru +5 -0
  11. data/java/config/isa_configurator/cellcount_flowcytometry.xml +1 -0
  12. data/java/config/isa_configurator/cellsorting_flowcyt.xml +5 -0
  13. data/java/config/isa_configurator/clinical_chemistry.xml +1 -0
  14. data/java/config/isa_configurator/copynumvariation_micro.xml +1 -0
  15. data/java/config/isa_configurator/dnamethylation_micro.xml +1 -0
  16. data/java/config/isa_configurator/dnamethylation_seq.xml +1 -0
  17. data/java/config/isa_configurator/envgen_survey_seq.xml +1 -0
  18. data/java/config/isa_configurator/genome_seq.xml +1 -0
  19. data/java/config/isa_configurator/hematology.xml +1 -0
  20. data/java/config/isa_configurator/heterozygosity_micro.xml +1 -0
  21. data/java/config/isa_configurator/histology.xml +1 -0
  22. data/java/config/isa_configurator/histonemodification_seq.xml +1 -0
  23. data/java/config/isa_configurator/metaboliteprofiling_ms.xml +114 -0
  24. data/java/config/isa_configurator/metaboliteprofiling_nmr.xml +114 -0
  25. data/java/config/isa_configurator/metagenome_seq.xml +1 -0
  26. data/java/config/isa_configurator/nru_assay.xml +8 -0
  27. data/java/config/isa_configurator/ppi_detection_micro.xml +1 -0
  28. data/java/config/isa_configurator/protein_dna_binding_ident_micro.xml +1 -0
  29. data/java/config/isa_configurator/protein_dna_binding_ident_seq.xml +1 -0
  30. data/java/config/isa_configurator/protein_expression_ge.xml +101 -0
  31. data/java/config/isa_configurator/protein_expression_micro.xml +1 -0
  32. data/java/config/isa_configurator/protein_expression_ms.xml +1 -0
  33. data/java/config/isa_configurator/proteinident_ms.xml +1 -0
  34. data/java/config/isa_configurator/snpanalysis_micro.xml +1 -0
  35. data/java/config/isa_configurator/studySample.xml +1 -0
  36. data/java/config/isa_configurator/tfbsident_micro.xml +1 -0
  37. data/java/config/isa_configurator/tfbsident_seq.xml +1 -0
  38. data/java/config/isa_configurator/transcription_micro.xml +1 -0
  39. data/java/config/isa_configurator/transcription_rtpcr.xml +1 -0
  40. data/java/config/isa_configurator/transcription_seq.xml +6 -0
  41. data/test/Rakefile +48 -0
  42. data/test/all.rb +3 -0
  43. data/test/authorization.rb +112 -0
  44. data/test/basic_rest.rb +98 -0
  45. data/test/data/invalid/BII-invalid.n3 +19641 -0
  46. data/test/data/invalid/a_TB-ACCUTOX-plate1.txt +97 -0
  47. data/test/data/invalid/a_TB-ACCUTOX-plate2.txt +97 -0
  48. data/test/data/invalid/a_TB-ACCUTOX-plate3.txt +97 -0
  49. data/test/data/invalid/acetaminophen-plate1-data.txt +97 -0
  50. data/test/data/invalid/acetaminophen-plate2-data.txt +97 -0
  51. data/test/data/invalid/acetaminophen-plate3-data.txt +97 -0
  52. data/test/data/invalid/i_Investigation.txt +156 -0
  53. data/test/data/invalid/ic50.txt +20 -0
  54. data/test/data/invalid/isa_TB_ACCUTOX.xls +0 -0
  55. data/test/data/invalid/isa_TB_ACCUTOX.zip +0 -0
  56. data/test/data/invalid/s_TB-ACCUTOX-acetaminophen.txt +58 -0
  57. data/test/data/valid/BII-I-1.n3 +19648 -0
  58. data/test/data/valid/BII-I-1.rdf +19648 -0
  59. data/test/data/valid/BII-I-1.zip +0 -0
  60. data/test/data/valid/isa-tab-renamed.zip +0 -0
  61. data/test/data/valid/isa_TB_BII.xls +0 -0
  62. data/test/httpd.rb +69 -0
  63. data/test/querytest.rb +42 -0
  64. data/test/upload.rb +152 -0
  65. data/test/xls_upload.rb +60 -0
  66. data/toxbank-investigation.gemspec +29 -0
  67. metadata +133 -0
data/test/data/invalid/a_TB-ACCUTOX-plate1.txt ADDED
@@ -0,0 +1,97 @@
1
+ Sample Name Characteristics[well] Factor Value[replicate] Protocol REF Assay Name Raw Data File Protocol REF Dose Response Name Derived Data File
2
+ VCb-plate1 A1 vcb1 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate1-A1 acetaminophen-plate1-data.txt none
3
+ VCb-plate1 A2 vcb2 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate1-A2 acetaminophen-plate1-data.txt none
4
+ C1b-plate1 A3 b1 Neutral Red Uptake (NRU) Cytotoxicity Test C1b-plate1-A3 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
5
+ C2b-plate1 A4 b1 Neutral Red Uptake (NRU) Cytotoxicity Test C2b-plate1-A4 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
6
+ C3b-plate1 A5 b1 Neutral Red Uptake (NRU) Cytotoxicity Test C3b-plate1-A5 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
7
+ C4b-plate1 A6 b1 Neutral Red Uptake (NRU) Cytotoxicity Test C4b-plate1-A6 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
8
+ C5b-plate1 A7 b1 Neutral Red Uptake (NRU) Cytotoxicity Test C5b-plate1-A7 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
9
+ C6b-plate1 A8 b1 Neutral Red Uptake (NRU) Cytotoxicity Test C6b-plate1-A8 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
10
+ C7b-plate1 A9 b1 Neutral Red Uptake (NRU) Cytotoxicity Test C7b-plate1-A9 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
11
+ C8b-plate1 A10 b1 Neutral Red Uptake (NRU) Cytotoxicity Test C8b-plate1-A10 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
12
+ VCb-plate1 A11 vcb3 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate1-A11 acetaminophen-plate1-data.txt none
13
+ VCb-plate1 A12 vcb4 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate1-A12 acetaminophen-plate1-data.txt none
14
+ VCb-plate1 B1 vcb5 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate1-B1 acetaminophen-plate1-data.txt none
15
+ VC1-plate1 B2 vc1_1 Neutral Red Uptake (NRU) Cytotoxicity Test VC1-plate1-B2 acetaminophen-plate1-data.txt none
16
+ C1-plate1 B3 r1 Neutral Red Uptake (NRU) Cytotoxicity Test C1-plate1-B3 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
17
+ C2-plate1 B4 r1 Neutral Red Uptake (NRU) Cytotoxicity Test C2-plate1-B4 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
18
+ C3-plate1 B5 r1 Neutral Red Uptake (NRU) Cytotoxicity Test C3-plate1-B5 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
19
+ C4-plate1 B6 r1 Neutral Red Uptake (NRU) Cytotoxicity Test C4-plate1-B6 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
20
+ C5-plate1 B7 r1 Neutral Red Uptake (NRU) Cytotoxicity Test C5-plate1-B7 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
21
+ C6-plate1 B8 r1 Neutral Red Uptake (NRU) Cytotoxicity Test C6-plate1-B8 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
22
+ C7-plate1 B9 r1 Neutral Red Uptake (NRU) Cytotoxicity Test C7-plate1-B9 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
23
+ C8-plate1 B10 r1 Neutral Red Uptake (NRU) Cytotoxicity Test C8-plate1-B10 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
24
+ VC2-plate1 B11 vc2_1 Neutral Red Uptake (NRU) Cytotoxicity Test VC2-plate1-B11 acetaminophen-plate1-data.txt none
25
+ VCb-plate1 B12 vcb6 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate1-B12 acetaminophen-plate1-data.txt none
26
+ VCb-plate1 C1 vcb7 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate1-C1 acetaminophen-plate1-data.txt none
27
+ VC1-plate1 C2 vc1_2 Neutral Red Uptake (NRU) Cytotoxicity Test VC1-plate1-C2 acetaminophen-plate1-data.txt none
28
+ C1-plate1 C3 r2 Neutral Red Uptake (NRU) Cytotoxicity Test C1-plate1-C3 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
29
+ C2-plate1 C4 r2 Neutral Red Uptake (NRU) Cytotoxicity Test C2-plate1-C4 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
30
+ C3-plate1 C5 r2 Neutral Red Uptake (NRU) Cytotoxicity Test C3-plate1-C5 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
31
+ C4-plate1 C6 r2 Neutral Red Uptake (NRU) Cytotoxicity Test C4-plate1-C6 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
32
+ C5-plate1 C7 r2 Neutral Red Uptake (NRU) Cytotoxicity Test C5-plate1-C7 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
33
+ C6-plate1 C8 r2 Neutral Red Uptake (NRU) Cytotoxicity Test C6-plate1-C8 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
34
+ C7-plate1 C9 r2 Neutral Red Uptake (NRU) Cytotoxicity Test C7-plate1-C9 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
35
+ C8-plate1 C10 r2 Neutral Red Uptake (NRU) Cytotoxicity Test C8-plate1-C10 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
36
+ VC2-plate1 C11 vc2_2 Neutral Red Uptake (NRU) Cytotoxicity Test VC2-plate1-C11 acetaminophen-plate1-data.txt none
37
+ VCb-plate1 C12 vcb8 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate1-C12 acetaminophen-plate1-data.txt none
38
+ VCb-plate1 D1 vcb9 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate1-D1 acetaminophen-plate1-data.txt none
39
+ VC1-plate1 D2 vc1_3 Neutral Red Uptake (NRU) Cytotoxicity Test VC1-plate1-D2 acetaminophen-plate1-data.txt none
40
+ C1-plate1 D3 r3 Neutral Red Uptake (NRU) Cytotoxicity Test C1-plate1-D3 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
41
+ C2-plate1 D4 r3 Neutral Red Uptake (NRU) Cytotoxicity Test C2-plate1-D4 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
42
+ C3-plate1 D5 r3 Neutral Red Uptake (NRU) Cytotoxicity Test C3-plate1-D5 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
43
+ C4-plate1 D6 r3 Neutral Red Uptake (NRU) Cytotoxicity Test C4-plate1-D6 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
44
+ C5-plate1 D7 r3 Neutral Red Uptake (NRU) Cytotoxicity Test C5-plate1-D7 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
45
+ C6-plate1 D8 r3 Neutral Red Uptake (NRU) Cytotoxicity Test C6-plate1-D8 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
46
+ C7-plate1 D9 r3 Neutral Red Uptake (NRU) Cytotoxicity Test C7-plate1-D9 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
47
+ C8-plate1 D10 r3 Neutral Red Uptake (NRU) Cytotoxicity Test C8-plate1-D10 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
48
+ VC2-plate1 D11 vc2_3 Neutral Red Uptake (NRU) Cytotoxicity Test VC2-plate1-D11 acetaminophen-plate1-data.txt none
49
+ VCb-plate1 D12 vcb10 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate1-D12 acetaminophen-plate1-data.txt none
50
+ VCb-plate1 E1 vcb11 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate1-E1 acetaminophen-plate1-data.txt none
51
+ VC1-plate1 E2 vc1_4 Neutral Red Uptake (NRU) Cytotoxicity Test VC1-plate1-E2 acetaminophen-plate1-data.txt none
52
+ C1-plate1 E3 r4 Neutral Red Uptake (NRU) Cytotoxicity Test C1-plate1-E3 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
53
+ C2-plate1 E4 r4 Neutral Red Uptake (NRU) Cytotoxicity Test C2-plate1-E4 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
54
+ C3-plate1 E5 r4 Neutral Red Uptake (NRU) Cytotoxicity Test C3-plate1-E5 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
55
+ C4-plate1 E6 r4 Neutral Red Uptake (NRU) Cytotoxicity Test C4-plate1-E6 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
56
+ C5-plate1 E7 r4 Neutral Red Uptake (NRU) Cytotoxicity Test C5-plate1-E7 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
57
+ C6-plate1 E8 r4 Neutral Red Uptake (NRU) Cytotoxicity Test C6-plate1-E8 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
58
+ C7-plate1 E9 r4 Neutral Red Uptake (NRU) Cytotoxicity Test C7-plate1-E9 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
59
+ C8-plate1 E10 r4 Neutral Red Uptake (NRU) Cytotoxicity Test C8-plate1-E10 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
60
+ VC2-plate1 E11 vc2_4 Neutral Red Uptake (NRU) Cytotoxicity Test VC2-plate1-E11 acetaminophen-plate1-data.txt none
61
+ VCb-plate1 E12 vcb12 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate1-E12 acetaminophen-plate1-data.txt none
62
+ VCb-plate1 F1 vcb13 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate1-F1 acetaminophen-plate1-data.txt none
63
+ VC1-plate1 F2 vc1_5 Neutral Red Uptake (NRU) Cytotoxicity Test VC1-plate1-F2 acetaminophen-plate1-data.txt none
64
+ C1-plate1 F3 r5 Neutral Red Uptake (NRU) Cytotoxicity Test C1-plate1-F3 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
65
+ C2-plate1 F4 r5 Neutral Red Uptake (NRU) Cytotoxicity Test C2-plate1-F4 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
66
+ C3-plate1 F5 r5 Neutral Red Uptake (NRU) Cytotoxicity Test C3-plate1-F5 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
67
+ C4-plate1 F6 r5 Neutral Red Uptake (NRU) Cytotoxicity Test C4-plate1-F6 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
68
+ C5-plate1 F7 r5 Neutral Red Uptake (NRU) Cytotoxicity Test C5-plate1-F7 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
69
+ C6-plate1 F8 r5 Neutral Red Uptake (NRU) Cytotoxicity Test C6-plate1-F8 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
70
+ C7-plate1 F9 r5 Neutral Red Uptake (NRU) Cytotoxicity Test C7-plate1-F9 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
71
+ C8-plate1 F10 r5 Neutral Red Uptake (NRU) Cytotoxicity Test C8-plate1-F10 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
72
+ VC2-plate1 F11 vc2_5 Neutral Red Uptake (NRU) Cytotoxicity Test VC2-plate1-F11 acetaminophen-plate1-data.txt none
73
+ VCb-plate1 F12 vcb14 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate1-F12 acetaminophen-plate1-data.txt none
74
+ VCb-plate1 G1 vcb15 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate1-G1 acetaminophen-plate1-data.txt none
75
+ VC1-plate1 G2 vc1_6 Neutral Red Uptake (NRU) Cytotoxicity Test VC1-plate1-G2 acetaminophen-plate1-data.txt none
76
+ C1-plate1 G3 r6 Neutral Red Uptake (NRU) Cytotoxicity Test C1-plate1-G3 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
77
+ C2-plate1 G4 r6 Neutral Red Uptake (NRU) Cytotoxicity Test C2-plate1-G4 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
78
+ C3-plate1 G5 r6 Neutral Red Uptake (NRU) Cytotoxicity Test C3-plate1-G5 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
79
+ C4-plate1 G6 r6 Neutral Red Uptake (NRU) Cytotoxicity Test C4-plate1-G6 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
80
+ C5-plate1 G7 r6 Neutral Red Uptake (NRU) Cytotoxicity Test C5-plate1-G7 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
81
+ C6-plate1 G8 r6 Neutral Red Uptake (NRU) Cytotoxicity Test C6-plate1-G8 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
82
+ C7-plate1 G9 r6 Neutral Red Uptake (NRU) Cytotoxicity Test C7-plate1-G9 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
83
+ C8-plate1 G10 r6 Neutral Red Uptake (NRU) Cytotoxicity Test C8-plate1-G10 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
84
+ VC2-plate1 G11 vc2_6 Neutral Red Uptake (NRU) Cytotoxicity Test VC2-plate1-G11 acetaminophen-plate1-data.txt none
85
+ VCb-plate1 G12 vcb16 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate1-G12 acetaminophen-plate1-data.txt none
86
+ VCb-plate1 H1 vcb17 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate1-H1 acetaminophen-plate1-data.txt none
87
+ VCb-plate1 H2 vcb18 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate1-H2 acetaminophen-plate1-data.txt none
88
+ C1b-plate1 H3 b2 Neutral Red Uptake (NRU) Cytotoxicity Test C1b-plate1-H3 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
89
+ C2b-plate1 H4 b2 Neutral Red Uptake (NRU) Cytotoxicity Test C2b-plate1-H4 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
90
+ C3b-plate1 H5 b2 Neutral Red Uptake (NRU) Cytotoxicity Test C3b-plate1-H5 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
91
+ C4b-plate1 H6 b2 Neutral Red Uptake (NRU) Cytotoxicity Test C4b-plate1-H6 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
92
+ C5b-plate1 H7 b2 Neutral Red Uptake (NRU) Cytotoxicity Test C5b-plate1-H7 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
93
+ C6b-plate1 H8 b2 Neutral Red Uptake (NRU) Cytotoxicity Test C6b-plate1-H8 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
94
+ C7b-plate1 H9 b2 Neutral Red Uptake (NRU) Cytotoxicity Test C7b-plate1-H9 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
95
+ C8b-plate1 H10 b2 Neutral Red Uptake (NRU) Cytotoxicity Test C8b-plate1-H10 acetaminophen-plate1-data.txt Hill function analysis acetaminophen-plate1-ic50 ic50.txt
96
+ VCb-plate1 H11 vcb19 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate1-H11 acetaminophen-plate1-data.txt none
97
+ VCb-plate1 H12 vcb20 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate1-H12 acetaminophen-plate1-data.txt none
data/test/data/invalid/a_TB-ACCUTOX-plate2.txt ADDED
@@ -0,0 +1,97 @@
1
+ Sample Name Characteristics[well] Factor Value[replicate] Protocol REF Assay Name Raw Data File Protocol REF Dose Response Name Derived Data File
2
+ VCb-plate2 A1 vcb1 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate2-A1 acetaminophen-plate2-data.txt none
3
+ VCb-plate2 A2 vcb2 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate2-A2 acetaminophen-plate2-data.txt none
4
+ C1b-plate2 A3 b1 Neutral Red Uptake (NRU) Cytotoxicity Test C1b-plate2-A3 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
5
+ C2b-plate2 A4 b1 Neutral Red Uptake (NRU) Cytotoxicity Test C2b-plate2-A4 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
6
+ C3b-plate2 A5 b1 Neutral Red Uptake (NRU) Cytotoxicity Test C3b-plate2-A5 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
7
+ C4b-plate2 A6 b1 Neutral Red Uptake (NRU) Cytotoxicity Test C4b-plate2-A6 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
8
+ C5b-plate2 A7 b1 Neutral Red Uptake (NRU) Cytotoxicity Test C5b-plate2-A7 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
9
+ C6b-plate2 A8 b1 Neutral Red Uptake (NRU) Cytotoxicity Test C6b-plate2-A8 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
10
+ C7b-plate2 A9 b1 Neutral Red Uptake (NRU) Cytotoxicity Test C7b-plate2-A9 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
11
+ C8b-plate2 A10 b1 Neutral Red Uptake (NRU) Cytotoxicity Test C8b-plate2-A10 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
12
+ VCb-plate2 A11 vcb3 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate2-A11 acetaminophen-plate2-data.txt none
13
+ VCb-plate2 A12 vcb4 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate2-A12 acetaminophen-plate2-data.txt none
14
+ VCb-plate2 B1 vcb5 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate2-B1 acetaminophen-plate2-data.txt none
15
+ VC1-plate2 B2 vc1_1 Neutral Red Uptake (NRU) Cytotoxicity Test VC1-plate2-B2 acetaminophen-plate2-data.txt none
16
+ C1-plate2 B3 r1 Neutral Red Uptake (NRU) Cytotoxicity Test C1-plate2-B3 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
17
+ C2-plate2 B4 r1 Neutral Red Uptake (NRU) Cytotoxicity Test C2-plate2-B4 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
18
+ C3-plate2 B5 r1 Neutral Red Uptake (NRU) Cytotoxicity Test C3-plate2-B5 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
19
+ C4-plate2 B6 r1 Neutral Red Uptake (NRU) Cytotoxicity Test C4-plate2-B6 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
20
+ C5-plate2 B7 r1 Neutral Red Uptake (NRU) Cytotoxicity Test C5-plate2-B7 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
21
+ C6-plate2 B8 r1 Neutral Red Uptake (NRU) Cytotoxicity Test C6-plate2-B8 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
22
+ C7-plate2 B9 r1 Neutral Red Uptake (NRU) Cytotoxicity Test C7-plate2-B9 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
23
+ C8-plate2 B10 r1 Neutral Red Uptake (NRU) Cytotoxicity Test C8-plate2-B10 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
24
+ VC2-plate2 B11 vc2_1 Neutral Red Uptake (NRU) Cytotoxicity Test VC2-plate2-B11 acetaminophen-plate2-data.txt none
25
+ VCb-plate2 B12 vcb6 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate2-B12 acetaminophen-plate2-data.txt none
26
+ VCb-plate2 C1 vcb7 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate2-C1 acetaminophen-plate2-data.txt none
27
+ VC1-plate2 C2 vc1_2 Neutral Red Uptake (NRU) Cytotoxicity Test VC1-plate2-C2 acetaminophen-plate2-data.txt none
28
+ C1-plate2 C3 r2 Neutral Red Uptake (NRU) Cytotoxicity Test C1-plate2-C3 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
29
+ C2-plate2 C4 r2 Neutral Red Uptake (NRU) Cytotoxicity Test C2-plate2-C4 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
30
+ C3-plate2 C5 r2 Neutral Red Uptake (NRU) Cytotoxicity Test C3-plate2-C5 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
31
+ C4-plate2 C6 r2 Neutral Red Uptake (NRU) Cytotoxicity Test C4-plate2-C6 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
32
+ C5-plate2 C7 r2 Neutral Red Uptake (NRU) Cytotoxicity Test C5-plate2-C7 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
33
+ C6-plate2 C8 r2 Neutral Red Uptake (NRU) Cytotoxicity Test C6-plate2-C8 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
34
+ C7-plate2 C9 r2 Neutral Red Uptake (NRU) Cytotoxicity Test C7-plate2-C9 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
35
+ C8-plate2 C10 r2 Neutral Red Uptake (NRU) Cytotoxicity Test C8-plate2-C10 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
36
+ VC2-plate2 C11 vc2_2 Neutral Red Uptake (NRU) Cytotoxicity Test VC2-plate2-C11 acetaminophen-plate2-data.txt none
37
+ VCb-plate2 C12 vcb8 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate2-C12 acetaminophen-plate2-data.txt none
38
+ VCb-plate2 D1 vcb9 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate2-D1 acetaminophen-plate2-data.txt none
39
+ VC1-plate2 D2 vc1_3 Neutral Red Uptake (NRU) Cytotoxicity Test VC1-plate2-D2 acetaminophen-plate2-data.txt none
40
+ C1-plate2 D3 r3 Neutral Red Uptake (NRU) Cytotoxicity Test C1-plate2-D3 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
41
+ C2-plate2 D4 r3 Neutral Red Uptake (NRU) Cytotoxicity Test C2-plate2-D4 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
42
+ C3-plate2 D5 r3 Neutral Red Uptake (NRU) Cytotoxicity Test C3-plate2-D5 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
43
+ C4-plate2 D6 r3 Neutral Red Uptake (NRU) Cytotoxicity Test C4-plate2-D6 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
44
+ C5-plate2 D7 r3 Neutral Red Uptake (NRU) Cytotoxicity Test C5-plate2-D7 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
45
+ C6-plate2 D8 r3 Neutral Red Uptake (NRU) Cytotoxicity Test C6-plate2-D8 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
46
+ C7-plate2 D9 r3 Neutral Red Uptake (NRU) Cytotoxicity Test C7-plate2-D9 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
47
+ C8-plate2 D10 r3 Neutral Red Uptake (NRU) Cytotoxicity Test C8-plate2-D10 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
48
+ VC2-plate2 D11 vc2_3 Neutral Red Uptake (NRU) Cytotoxicity Test VC2-plate2-D11 acetaminophen-plate2-data.txt none
49
+ VCb-plate2 D12 vcb10 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate2-D12 acetaminophen-plate2-data.txt none
50
+ VCb-plate2 E1 vcb11 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate2-E1 acetaminophen-plate2-data.txt none
51
+ VC1-plate2 E2 vc1_4 Neutral Red Uptake (NRU) Cytotoxicity Test VC1-plate2-E2 acetaminophen-plate2-data.txt none
52
+ C1-plate2 E3 r4 Neutral Red Uptake (NRU) Cytotoxicity Test C1-plate2-E3 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
53
+ C2-plate2 E4 r4 Neutral Red Uptake (NRU) Cytotoxicity Test C2-plate2-E4 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
54
+ C3-plate2 E5 r4 Neutral Red Uptake (NRU) Cytotoxicity Test C3-plate2-E5 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
55
+ C4-plate2 E6 r4 Neutral Red Uptake (NRU) Cytotoxicity Test C4-plate2-E6 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
56
+ C5-plate2 E7 r4 Neutral Red Uptake (NRU) Cytotoxicity Test C5-plate2-E7 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
57
+ C6-plate2 E8 r4 Neutral Red Uptake (NRU) Cytotoxicity Test C6-plate2-E8 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
58
+ C7-plate2 E9 r4 Neutral Red Uptake (NRU) Cytotoxicity Test C7-plate2-E9 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
59
+ C8-plate2 E10 r4 Neutral Red Uptake (NRU) Cytotoxicity Test C8-plate2-E10 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
60
+ VC2-plate2 E11 vc2_4 Neutral Red Uptake (NRU) Cytotoxicity Test VC2-plate2-E11 acetaminophen-plate2-data.txt none
61
+ VCb-plate2 E12 vcb12 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate2-E12 acetaminophen-plate2-data.txt none
62
+ VCb-plate2 F1 vcb13 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate2-F1 acetaminophen-plate2-data.txt none
63
+ VC1-plate2 F2 vc1_5 Neutral Red Uptake (NRU) Cytotoxicity Test VC1-plate2-F2 acetaminophen-plate2-data.txt none
64
+ C1-plate2 F3 r5 Neutral Red Uptake (NRU) Cytotoxicity Test C1-plate2-F3 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
65
+ C2-plate2 F4 r5 Neutral Red Uptake (NRU) Cytotoxicity Test C2-plate2-F4 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
66
+ C3-plate2 F5 r5 Neutral Red Uptake (NRU) Cytotoxicity Test C3-plate2-F5 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
67
+ C4-plate2 F6 r5 Neutral Red Uptake (NRU) Cytotoxicity Test C4-plate2-F6 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
68
+ C5-plate2 F7 r5 Neutral Red Uptake (NRU) Cytotoxicity Test C5-plate2-F7 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
69
+ C6-plate2 F8 r5 Neutral Red Uptake (NRU) Cytotoxicity Test C6-plate2-F8 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
70
+ C7-plate2 F9 r5 Neutral Red Uptake (NRU) Cytotoxicity Test C7-plate2-F9 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
71
+ C8-plate2 F10 r5 Neutral Red Uptake (NRU) Cytotoxicity Test C8-plate2-F10 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
72
+ VC2-plate2 F11 vc2_5 Neutral Red Uptake (NRU) Cytotoxicity Test VC2-plate2-F11 acetaminophen-plate2-data.txt none
73
+ VCb-plate2 F12 vcb14 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate2-F12 acetaminophen-plate2-data.txt none
74
+ VCb-plate2 G1 vcb15 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate2-G1 acetaminophen-plate2-data.txt none
75
+ VC1-plate2 G2 vc1_6 Neutral Red Uptake (NRU) Cytotoxicity Test VC1-plate2-G2 acetaminophen-plate2-data.txt none
76
+ C1-plate2 G3 r6 Neutral Red Uptake (NRU) Cytotoxicity Test C1-plate2-G3 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
77
+ C2-plate2 G4 r6 Neutral Red Uptake (NRU) Cytotoxicity Test C2-plate2-G4 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
78
+ C3-plate2 G5 r6 Neutral Red Uptake (NRU) Cytotoxicity Test C3-plate2-G5 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
79
+ C4-plate2 G6 r6 Neutral Red Uptake (NRU) Cytotoxicity Test C4-plate2-G6 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
80
+ C5-plate2 G7 r6 Neutral Red Uptake (NRU) Cytotoxicity Test C5-plate2-G7 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
81
+ C6-plate2 G8 r6 Neutral Red Uptake (NRU) Cytotoxicity Test C6-plate2-G8 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
82
+ C7-plate2 G9 r6 Neutral Red Uptake (NRU) Cytotoxicity Test C7-plate2-G9 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
83
+ C8-plate2 G10 r6 Neutral Red Uptake (NRU) Cytotoxicity Test C8-plate2-G10 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
84
+ VC2-plate2 G11 vc2_6 Neutral Red Uptake (NRU) Cytotoxicity Test VC2-plate2-G11 acetaminophen-plate2-data.txt none
85
+ VCb-plate2 G12 vcb16 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate2-G12 acetaminophen-plate2-data.txt none
86
+ VCb-plate2 H1 vcb17 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate2-H1 acetaminophen-plate2-data.txt none
87
+ VCb-plate2 H2 vcb18 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate2-H2 acetaminophen-plate2-data.txt none
88
+ C1b-plate2 H3 b2 Neutral Red Uptake (NRU) Cytotoxicity Test C1b-plate2-H3 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
89
+ C2b-plate2 H4 b2 Neutral Red Uptake (NRU) Cytotoxicity Test C2b-plate2-H4 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
90
+ C3b-plate2 H5 b2 Neutral Red Uptake (NRU) Cytotoxicity Test C3b-plate2-H5 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
91
+ C4b-plate2 H6 b2 Neutral Red Uptake (NRU) Cytotoxicity Test C4b-plate2-H6 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
92
+ C5b-plate2 H7 b2 Neutral Red Uptake (NRU) Cytotoxicity Test C5b-plate2-H7 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
93
+ C6b-plate2 H8 b2 Neutral Red Uptake (NRU) Cytotoxicity Test C6b-plate2-H8 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
94
+ C7b-plate2 H9 b2 Neutral Red Uptake (NRU) Cytotoxicity Test C7b-plate2-H9 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
95
+ C8b-plate2 H10 b2 Neutral Red Uptake (NRU) Cytotoxicity Test C8b-plate2-H10 acetaminophen-plate2-data.txt Hill function analysis acetaminophen-plate2-ic50 ic50.txt
96
+ VCb-plate2 H11 vcb19 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate2-H11 acetaminophen-plate2-data.txt none
97
+ VCb-plate2 H12 vcb20 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate2-H12 acetaminophen-plate2-data.txt none
data/test/data/invalid/a_TB-ACCUTOX-plate3.txt ADDED
@@ -0,0 +1,97 @@
1
+ Sample Name Characteristics[well] Factor Value[replicate] Protocol REF Assay Name Raw Data File Protocol REF Dose Response Name Derived Data File
2
+ VCb-plate3 A1 vcb1 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate3-A1 acetaminophen-plate3-data.txt none
3
+ VCb-plate3 A2 vcb2 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate3-A2 acetaminophen-plate3-data.txt none
4
+ C1b-plate3 A3 b1 Neutral Red Uptake (NRU) Cytotoxicity Test C1b-plate3-A3 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
5
+ C2b-plate3 A4 b1 Neutral Red Uptake (NRU) Cytotoxicity Test C2b-plate3-A4 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
6
+ C3b-plate3 A5 b1 Neutral Red Uptake (NRU) Cytotoxicity Test C3b-plate3-A5 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
7
+ C4b-plate3 A6 b1 Neutral Red Uptake (NRU) Cytotoxicity Test C4b-plate3-A6 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
8
+ C5b-plate3 A7 b1 Neutral Red Uptake (NRU) Cytotoxicity Test C5b-plate3-A7 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
9
+ C6b-plate3 A8 b1 Neutral Red Uptake (NRU) Cytotoxicity Test C6b-plate3-A8 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
10
+ C7b-plate3 A9 b1 Neutral Red Uptake (NRU) Cytotoxicity Test C7b-plate3-A9 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
11
+ C8b-plate3 A10 b1 Neutral Red Uptake (NRU) Cytotoxicity Test C8b-plate3-A10 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
12
+ VCb-plate3 A11 vcb3 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate3-A11 acetaminophen-plate3-data.txt none
13
+ VCb-plate3 A12 vcb4 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate3-A12 acetaminophen-plate3-data.txt none
14
+ VCb-plate3 B1 vcb5 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate3-B1 acetaminophen-plate3-data.txt none
15
+ VC1-plate3 B2 vc1_1 Neutral Red Uptake (NRU) Cytotoxicity Test VC1-plate3-B2 acetaminophen-plate3-data.txt none
16
+ C1-plate3 B3 r1 Neutral Red Uptake (NRU) Cytotoxicity Test C1-plate3-B3 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
17
+ C2-plate3 B4 r1 Neutral Red Uptake (NRU) Cytotoxicity Test C2-plate3-B4 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
18
+ C3-plate3 B5 r1 Neutral Red Uptake (NRU) Cytotoxicity Test C3-plate3-B5 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
19
+ C4-plate3 B6 r1 Neutral Red Uptake (NRU) Cytotoxicity Test C4-plate3-B6 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
20
+ C5-plate3 B7 r1 Neutral Red Uptake (NRU) Cytotoxicity Test C5-plate3-B7 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
21
+ C6-plate3 B8 r1 Neutral Red Uptake (NRU) Cytotoxicity Test C6-plate3-B8 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
22
+ C7-plate3 B9 r1 Neutral Red Uptake (NRU) Cytotoxicity Test C7-plate3-B9 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
23
+ C8-plate3 B10 r1 Neutral Red Uptake (NRU) Cytotoxicity Test C8-plate3-B10 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
24
+ VC2-plate3 B11 vc2_1 Neutral Red Uptake (NRU) Cytotoxicity Test VC2-plate3-B11 acetaminophen-plate3-data.txt none
25
+ VCb-plate3 B12 vcb6 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate3-B12 acetaminophen-plate3-data.txt none
26
+ VCb-plate3 C1 vcb7 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate3-C1 acetaminophen-plate3-data.txt none
27
+ VC1-plate3 C2 vc1_2 Neutral Red Uptake (NRU) Cytotoxicity Test VC1-plate3-C2 acetaminophen-plate3-data.txt none
28
+ C1-plate3 C3 r2 Neutral Red Uptake (NRU) Cytotoxicity Test C1-plate3-C3 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
29
+ C2-plate3 C4 r2 Neutral Red Uptake (NRU) Cytotoxicity Test C2-plate3-C4 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
30
+ C3-plate3 C5 r2 Neutral Red Uptake (NRU) Cytotoxicity Test C3-plate3-C5 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
31
+ C4-plate3 C6 r2 Neutral Red Uptake (NRU) Cytotoxicity Test C4-plate3-C6 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
32
+ C5-plate3 C7 r2 Neutral Red Uptake (NRU) Cytotoxicity Test C5-plate3-C7 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
33
+ C6-plate3 C8 r2 Neutral Red Uptake (NRU) Cytotoxicity Test C6-plate3-C8 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
34
+ C7-plate3 C9 r2 Neutral Red Uptake (NRU) Cytotoxicity Test C7-plate3-C9 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
35
+ C8-plate3 C10 r2 Neutral Red Uptake (NRU) Cytotoxicity Test C8-plate3-C10 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
36
+ VC2-plate3 C11 vc2_2 Neutral Red Uptake (NRU) Cytotoxicity Test VC2-plate3-C11 acetaminophen-plate3-data.txt none
37
+ VCb-plate3 C12 vcb8 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate3-C12 acetaminophen-plate3-data.txt none
38
+ VCb-plate3 D1 vcb9 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate3-D1 acetaminophen-plate3-data.txt none
39
+ VC1-plate3 D2 vc1_3 Neutral Red Uptake (NRU) Cytotoxicity Test VC1-plate3-D2 acetaminophen-plate3-data.txt none
40
+ C1-plate3 D3 r3 Neutral Red Uptake (NRU) Cytotoxicity Test C1-plate3-D3 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
41
+ C2-plate3 D4 r3 Neutral Red Uptake (NRU) Cytotoxicity Test C2-plate3-D4 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
42
+ C3-plate3 D5 r3 Neutral Red Uptake (NRU) Cytotoxicity Test C3-plate3-D5 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
43
+ C4-plate3 D6 r3 Neutral Red Uptake (NRU) Cytotoxicity Test C4-plate3-D6 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
44
+ C5-plate3 D7 r3 Neutral Red Uptake (NRU) Cytotoxicity Test C5-plate3-D7 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
45
+ C6-plate3 D8 r3 Neutral Red Uptake (NRU) Cytotoxicity Test C6-plate3-D8 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
46
+ C7-plate3 D9 r3 Neutral Red Uptake (NRU) Cytotoxicity Test C7-plate3-D9 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
47
+ C8-plate3 D10 r3 Neutral Red Uptake (NRU) Cytotoxicity Test C8-plate3-D10 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
48
+ VC2-plate3 D11 vc2_3 Neutral Red Uptake (NRU) Cytotoxicity Test VC2-plate3-D11 acetaminophen-plate3-data.txt none
49
+ VCb-plate3 D12 vcb10 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate3-D12 acetaminophen-plate3-data.txt none
50
+ VCb-plate3 E1 vcb11 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate3-E1 acetaminophen-plate3-data.txt none
51
+ VC1-plate3 E2 vc1_4 Neutral Red Uptake (NRU) Cytotoxicity Test VC1-plate3-E2 acetaminophen-plate3-data.txt none
52
+ C1-plate3 E3 r4 Neutral Red Uptake (NRU) Cytotoxicity Test C1-plate3-E3 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
53
+ C2-plate3 E4 r4 Neutral Red Uptake (NRU) Cytotoxicity Test C2-plate3-E4 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
54
+ C3-plate3 E5 r4 Neutral Red Uptake (NRU) Cytotoxicity Test C3-plate3-E5 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
55
+ C4-plate3 E6 r4 Neutral Red Uptake (NRU) Cytotoxicity Test C4-plate3-E6 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
56
+ C5-plate3 E7 r4 Neutral Red Uptake (NRU) Cytotoxicity Test C5-plate3-E7 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
57
+ C6-plate3 E8 r4 Neutral Red Uptake (NRU) Cytotoxicity Test C6-plate3-E8 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
58
+ C7-plate3 E9 r4 Neutral Red Uptake (NRU) Cytotoxicity Test C7-plate3-E9 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
59
+ C8-plate3 E10 r4 Neutral Red Uptake (NRU) Cytotoxicity Test C8-plate3-E10 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
60
+ VC2-plate3 E11 vc2_4 Neutral Red Uptake (NRU) Cytotoxicity Test VC2-plate3-E11 acetaminophen-plate3-data.txt none
61
+ VCb-plate3 E12 vcb12 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate3-E12 acetaminophen-plate3-data.txt none
62
+ VCb-plate3 F1 vcb13 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate3-F1 acetaminophen-plate3-data.txt none
63
+ VC1-plate3 F2 vc1_5 Neutral Red Uptake (NRU) Cytotoxicity Test VC1-plate3-F2 acetaminophen-plate3-data.txt none
64
+ C1-plate3 F3 r5 Neutral Red Uptake (NRU) Cytotoxicity Test C1-plate3-F3 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
65
+ C2-plate3 F4 r5 Neutral Red Uptake (NRU) Cytotoxicity Test C2-plate3-F4 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
66
+ C3-plate3 F5 r5 Neutral Red Uptake (NRU) Cytotoxicity Test C3-plate3-F5 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
67
+ C4-plate3 F6 r5 Neutral Red Uptake (NRU) Cytotoxicity Test C4-plate3-F6 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
68
+ C5-plate3 F7 r5 Neutral Red Uptake (NRU) Cytotoxicity Test C5-plate3-F7 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
69
+ C6-plate3 F8 r5 Neutral Red Uptake (NRU) Cytotoxicity Test C6-plate3-F8 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
70
+ C7-plate3 F9 r5 Neutral Red Uptake (NRU) Cytotoxicity Test C7-plate3-F9 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
71
+ C8-plate3 F10 r5 Neutral Red Uptake (NRU) Cytotoxicity Test C8-plate3-F10 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
72
+ VC2-plate3 F11 vc2_5 Neutral Red Uptake (NRU) Cytotoxicity Test VC2-plate3-F11 acetaminophen-plate3-data.txt none
73
+ VCb-plate3 F12 vcb14 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate3-F12 acetaminophen-plate3-data.txt none
74
+ VCb-plate3 G1 vcb15 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate3-G1 acetaminophen-plate3-data.txt none
75
+ VC1-plate3 G2 vc1_6 Neutral Red Uptake (NRU) Cytotoxicity Test VC1-plate3-G2 acetaminophen-plate3-data.txt none
76
+ C1-plate3 G3 r6 Neutral Red Uptake (NRU) Cytotoxicity Test C1-plate3-G3 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
77
+ C2-plate3 G4 r6 Neutral Red Uptake (NRU) Cytotoxicity Test C2-plate3-G4 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
78
+ C3-plate3 G5 r6 Neutral Red Uptake (NRU) Cytotoxicity Test C3-plate3-G5 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
79
+ C4-plate3 G6 r6 Neutral Red Uptake (NRU) Cytotoxicity Test C4-plate3-G6 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
80
+ C5-plate3 G7 r6 Neutral Red Uptake (NRU) Cytotoxicity Test C5-plate3-G7 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
81
+ C6-plate3 G8 r6 Neutral Red Uptake (NRU) Cytotoxicity Test C6-plate3-G8 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
82
+ C7-plate3 G9 r6 Neutral Red Uptake (NRU) Cytotoxicity Test C7-plate3-G9 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
83
+ C8-plate3 G10 r6 Neutral Red Uptake (NRU) Cytotoxicity Test C8-plate3-G10 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
84
+ VC2-plate3 G11 vc2_6 Neutral Red Uptake (NRU) Cytotoxicity Test VC2-plate3-G11 acetaminophen-plate3-data.txt none
85
+ VCb-plate3 G12 vcb16 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate3-G12 acetaminophen-plate3-data.txt none
86
+ VCb-plate3 H1 vcb17 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate3-H1 acetaminophen-plate3-data.txt none
87
+ VCb-plate3 H2 vcb18 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate3-H2 acetaminophen-plate3-data.txt none
88
+ C1b-plate3 H3 b2 Neutral Red Uptake (NRU) Cytotoxicity Test C1b-plate3-H3 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
89
+ C2b-plate3 H4 b2 Neutral Red Uptake (NRU) Cytotoxicity Test C2b-plate3-H4 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
90
+ C3b-plate3 H5 b2 Neutral Red Uptake (NRU) Cytotoxicity Test C3b-plate3-H5 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
91
+ C4b-plate3 H6 b2 Neutral Red Uptake (NRU) Cytotoxicity Test C4b-plate3-H6 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
92
+ C5b-plate3 H7 b2 Neutral Red Uptake (NRU) Cytotoxicity Test C5b-plate3-H7 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
93
+ C6b-plate3 H8 b2 Neutral Red Uptake (NRU) Cytotoxicity Test C6b-plate3-H8 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
94
+ C7b-plate3 H9 b2 Neutral Red Uptake (NRU) Cytotoxicity Test C7b-plate3-H9 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
95
+ C8b-plate3 H10 b2 Neutral Red Uptake (NRU) Cytotoxicity Test C8b-plate3-H10 acetaminophen-plate3-data.txt Hill function analysis acetaminophen-plate3-ic50 ic50.txt
96
+ VCb-plate3 H11 vcb19 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate3-H11 acetaminophen-plate3-data.txt none
97
+ VCb-plate3 H12 vcb20 Neutral Red Uptake (NRU) Cytotoxicity Test VCb-plate3-H12 acetaminophen-plate3-data.txt none
data/test/data/invalid/acetaminophen-plate1-data.txt ADDED
@@ -0,0 +1,97 @@
1
+ Raw Data
2
+ C1b-plate1-A3
3
+ C1b-plate1-H3
4
+ C1-plate1-B3 0.3
5
+ C1-plate1-C3 0.0678
6
+ C1-plate1-D3 0.0
7
+ C1-plate1-E3 0.2272
8
+ C1-plate1-F3 0.2356
9
+ C1-plate1-G3 0.0
10
+ C2b-plate1-A4
11
+ C2b-plate1-H4
12
+ C2-plate1-B4 0.0
13
+ C2-plate1-C4 0.3472
14
+ C2-plate1-D4 0.1214
15
+ C2-plate1-E4 0.0
16
+ C2-plate1-F4 0.0
17
+ C2-plate1-G4 0.4015
18
+ C3b-plate1-A5
19
+ C3b-plate1-H5
20
+ C3-plate1-B5 0.179
21
+ C3-plate1-C5 0.4139
22
+ C3-plate1-D5 0.2149
23
+ C3-plate1-E5 0.8142
24
+ C3-plate1-F5 0.1056
25
+ C3-plate1-G5 0.1664
26
+ C4b-plate1-A6
27
+ C4b-plate1-H6
28
+ C4-plate1-B6 0.3355
29
+ C4-plate1-C6 0.4757
30
+ C4-plate1-D6 0.2348
31
+ C4-plate1-E6 0.0048
32
+ C4-plate1-F6 0.6365
33
+ C4-plate1-G6 0.3435
34
+ C5b-plate1-A7
35
+ C5b-plate1-H7
36
+ C5-plate1-B7 0.4925
37
+ C5-plate1-C7 0.6882
38
+ C5-plate1-D7 0.593
39
+ C5-plate1-E7 0.65
40
+ C5-plate1-F7 0.5711
41
+ C5-plate1-G7 0.7669
42
+ C6b-plate1-A8
43
+ C6b-plate1-H8
44
+ C6-plate1-B8 0.5185
45
+ C6-plate1-C8 0.8727
46
+ C6-plate1-D8 0.9901
47
+ C6-plate1-E8 0.8654
48
+ C6-plate1-F8 0.8512
49
+ C6-plate1-G8 0.6754
50
+ C7b-plate1-A9
51
+ C7b-plate1-H9
52
+ C7-plate1-B9 0.6429
53
+ C7-plate1-C9 0.7411
54
+ C7-plate1-D9 0.7374
55
+ C7-plate1-E9 1.1764
56
+ C7-plate1-F9 0.8433
57
+ C7-plate1-G9 0.9648
58
+ C8b-plate1-A10
59
+ C8b-plate1-H10
60
+ C8-plate1-B10 1.0378
61
+ C8-plate1-C10 1.1535
62
+ C8-plate1-D10 0.8948
63
+ C8-plate1-E10 1.0837
64
+ C8-plate1-F10 0.7808
65
+ C8-plate1-G10 1.0493
66
+ VC1-plate1-B2 1.0464
67
+ VC1-plate1-C2 0.9774
68
+ VC1-plate1-D2 0.9179
69
+ VC1-plate1-E2 0.8869
70
+ VC1-plate1-F2 0.8596
71
+ VC1-plate1-G2 1.1235
72
+ VC2-plate1-B11
73
+ VC2-plate1-C11
74
+ VC2-plate1-D11
75
+ VC2-plate1-E11
76
+ VC2-plate1-F11
77
+ VC2-plate1-G11
78
+ VCb-plate1-A1
79
+ VCb-plate1-A11
80
+ VCb-plate1-A12
81
+ VCb-plate1-A2
82
+ VCb-plate1-B1
83
+ VCb-plate1-B12
84
+ VCb-plate1-C1
85
+ VCb-plate1-C12
86
+ VCb-plate1-D1
87
+ VCb-plate1-D12
88
+ VCb-plate1-E1
89
+ VCb-plate1-E12
90
+ VCb-plate1-F1
91
+ VCb-plate1-F12
92
+ VCb-plate1-G1
93
+ VCb-plate1-G12
94
+ VCb-plate1-H1
95
+ VCb-plate1-H11
96
+ VCb-plate1-H12
97
+ VCb-plate1-H2
data/test/data/invalid/acetaminophen-plate2-data.txt ADDED
@@ -0,0 +1,97 @@
1
+ Assay Name Raw Data
2
+ C1b-plate1-A3
3
+ C1b-plate1-H3
4
+ C1-plate1-B3 0.302
5
+ C1-plate1-C3 0.0698
6
+ C1-plate1-D3 0.002
7
+ C1-plate1-E3 0.2292
8
+ C1-plate1-F3 0.2376
9
+ C1-plate1-G3 0.002
10
+ C2b-plate1-A4
11
+ C2b-plate1-H4
12
+ C2-plate1-B4 0.002
13
+ C2-plate1-C4 0.3492
14
+ C2-plate1-D4 0.1234
15
+ C2-plate1-E4 0.002
16
+ C2-plate1-F4 0.002
17
+ C2-plate1-G4 0.4035
18
+ C3b-plate1-A5
19
+ C3b-plate1-H5
20
+ C3-plate1-B5 0.181
21
+ C3-plate1-C5 0.4159
22
+ C3-plate1-D5 0.2169
23
+ C3-plate1-E5 0.8162
24
+ C3-plate1-F5 0.1076
25
+ C3-plate1-G5 0.1684
26
+ C4b-plate1-A6
27
+ C4b-plate1-H6
28
+ C4-plate1-B6 0.3375
29
+ C4-plate1-C6 0.4777
30
+ C4-plate1-D6 0.2368
31
+ C4-plate1-E6 0.0068
32
+ C4-plate1-F6 0.6385
33
+ C4-plate1-G6 0.3455
34
+ C5b-plate1-A7
35
+ C5b-plate1-H7
36
+ C5-plate1-B7 0.4945
37
+ C5-plate1-C7 0.6902
38
+ C5-plate1-D7 0.595
39
+ C5-plate1-E7 0.652
40
+ C5-plate1-F7 0.5731
41
+ C5-plate1-G7 0.7689
42
+ C6b-plate1-A8
43
+ C6b-plate1-H8
44
+ C6-plate1-B8 0.5205
45
+ C6-plate1-C8 0.8747
46
+ C6-plate1-D8 0.9921
47
+ C6-plate1-E8 0.8674
48
+ C6-plate1-F8 0.8532
49
+ C6-plate1-G8 0.6774
50
+ C7b-plate1-A9
51
+ C7b-plate1-H9
52
+ C7-plate1-B9 0.6449
53
+ C7-plate1-C9 0.7431
54
+ C7-plate1-D9 0.7394
55
+ C7-plate1-E9 1.1784
56
+ C7-plate1-F9 0.8453
57
+ C7-plate1-G9 0.9668
58
+ C8b-plate1-A10
59
+ C8b-plate1-H10
60
+ C8-plate1-B10 1.0398
61
+ C8-plate1-C10 1.1555
62
+ C8-plate1-D10 0.8968
63
+ C8-plate1-E10 1.0857
64
+ C8-plate1-F10 0.7828
65
+ C8-plate1-G10 1.0513
66
+ VC1-plate1-B2 1.0484
67
+ VC1-plate1-C2 0.9794
68
+ VC1-plate1-D2 0.9199
69
+ VC1-plate1-E2 0.8889
70
+ VC1-plate1-F2 0.8616
71
+ VC1-plate1-G2 1.1255
72
+ VC2-plate1-B11
73
+ VC2-plate1-C11
74
+ VC2-plate1-D11
75
+ VC2-plate1-E11
76
+ VC2-plate1-F11
77
+ VC2-plate1-G11
78
+ VCb-plate1-A1
79
+ VCb-plate1-A11
80
+ VCb-plate1-A12
81
+ VCb-plate1-A2
82
+ VCb-plate1-B1
83
+ VCb-plate1-B12
84
+ VCb-plate1-C1
85
+ VCb-plate1-C12
86
+ VCb-plate1-D1
87
+ VCb-plate1-D12
88
+ VCb-plate1-E1
89
+ VCb-plate1-E12
90
+ VCb-plate1-F1
91
+ VCb-plate1-F12
92
+ VCb-plate1-G1
93
+ VCb-plate1-G12
94
+ VCb-plate1-H1
95
+ VCb-plate1-H11
96
+ VCb-plate1-H12
97
+ VCb-plate1-H2
data/test/data/invalid/acetaminophen-plate3-data.txt ADDED
@@ -0,0 +1,97 @@
1
+ Assay Name Raw Data
2
+ C1b-plate1-A3
3
+ C1b-plate1-H3
4
+ C1-plate1-B3 0.3
5
+ C1-plate1-C3 0.0678
6
+ C1-plate1-D3 0.0
7
+ C1-plate1-E3 0.2272
8
+ C1-plate1-F3 0.2356
9
+ C1-plate1-G3 0.0
10
+ C2b-plate1-A4
11
+ C2b-plate1-H4
12
+ C2-plate1-B4 0.0
13
+ C2-plate1-C4 0.3472
14
+ C2-plate1-D4 0.1214
15
+ C2-plate1-E4 0.0
16
+ C2-plate1-F4 0.0
17
+ C2-plate1-G4 0.4015
18
+ C3b-plate1-A5
19
+ C3b-plate1-H5
20
+ C3-plate1-B5 0.179
21
+ C3-plate1-C5 0.4139
22
+ C3-plate1-D5 0.2149
23
+ C3-plate1-E5 0.8142
24
+ C3-plate1-F5 0.1056
25
+ C3-plate1-G5 0.1664
26
+ C4b-plate1-A6
27
+ C4b-plate1-H6
28
+ C4-plate1-B6 0.3355
29
+ C4-plate1-C6 0.4757
30
+ C4-plate1-D6 0.2348
31
+ C4-plate1-E6 0.0048
32
+ C4-plate1-F6 0.6365
33
+ C4-plate1-G6 0.3435
34
+ C5b-plate1-A7
35
+ C5b-plate1-H7
36
+ C5-plate1-B7 0.4925
37
+ C5-plate1-C7 0.6882
38
+ C5-plate1-D7 0.593
39
+ C5-plate1-E7 0.65
40
+ C5-plate1-F7 0.5711
41
+ C5-plate1-G7 0.7669
42
+ C6b-plate1-A8
43
+ C6b-plate1-H8
44
+ C6-plate1-B8 0.5185
45
+ C6-plate1-C8 0.8727
46
+ C6-plate1-D8 0.9901
47
+ C6-plate1-E8 0.8654
48
+ C6-plate1-F8 0.8512
49
+ C6-plate1-G8 0.6754
50
+ C7b-plate1-A9
51
+ C7b-plate1-H9
52
+ C7-plate1-B9 0.6429
53
+ C7-plate1-C9 0.7411
54
+ C7-plate1-D9 0.7374
55
+ C7-plate1-E9 1.1764
56
+ C7-plate1-F9 0.8433
57
+ C7-plate1-G9 0.9648
58
+ C8b-plate1-A10
59
+ C8b-plate1-H10
60
+ C8-plate1-B10 1.0378
61
+ C8-plate1-C10 1.1535
62
+ C8-plate1-D10 0.8948
63
+ C8-plate1-E10 1.0837
64
+ C8-plate1-F10 0.7808
65
+ C8-plate1-G10 1.0493
66
+ VC1-plate1-B2 1.0464
67
+ VC1-plate1-C2 0.9774
68
+ VC1-plate1-D2 0.9179
69
+ VC1-plate1-E2 0.8869
70
+ VC1-plate1-F2 0.8596
71
+ VC1-plate1-G2 1.1235
72
+ VC2-plate1-B11
73
+ VC2-plate1-C11
74
+ VC2-plate1-D11
75
+ VC2-plate1-E11
76
+ VC2-plate1-F11
77
+ VC2-plate1-G11
78
+ VCb-plate1-A1
79
+ VCb-plate1-A11
80
+ VCb-plate1-A12
81
+ VCb-plate1-A2
82
+ VCb-plate1-B1
83
+ VCb-plate1-B12
84
+ VCb-plate1-C1
85
+ VCb-plate1-C12
86
+ VCb-plate1-D1
87
+ VCb-plate1-D12
88
+ VCb-plate1-E1
89
+ VCb-plate1-E12
90
+ VCb-plate1-F1
91
+ VCb-plate1-F12
92
+ VCb-plate1-G1
93
+ VCb-plate1-G12
94
+ VCb-plate1-H1
95
+ VCb-plate1-H11
96
+ VCb-plate1-H12
97
+ VCb-plate1-H2