togezo 0.0.1

checksums.yaml

@@ -0,0 +1,7 @@
+---
+SHA1:
+  metadata.gz: 9c6a839255715bf9c7c9d7b558220ae81f4d85ea
+  data.tar.gz: 84f3ad8e1f6758e01f44812afbc2f12e6b15980d
+SHA512:
+  metadata.gz: 3c69585db2d9db500f4b477dc7b56be8fadd5106b18e2e1acf97eb7b6c303d6623394ee11e910faa7e14ad4561923bb13d35b0163a30bf20587b5c286a83d0b1
+  data.tar.gz: 05e0fcc25e0025f8bf0315f02230696fbbdba4f1d5a75a9cf0683dfc6c83043eb951fc825cfe7d79359a04db3ce77a088b7ac45581484d939b81d340cc74fc07

data/.gitignore

@@ -0,0 +1,9 @@
+/.bundle/
+/.yardoc
+/Gemfile.lock
+/_yardoc/
+/coverage/
+/doc/
+/pkg/
+/spec/reports/
+/tmp/

data/.rspec

@@ -0,0 +1,2 @@
+--format documentation
+--color

data/.travis.yml

@@ -0,0 +1,4 @@
+language: ruby
+rvm:
+  - 2.1.2
+before_install: gem install bundler -v 1.10.6

data/Gemfile

@@ -0,0 +1,4 @@
+source 'https://rubygems.org'
+
+# Specify your gem's dependencies in togezo.gemspec
+gemspec

data/README.md

@@ -0,0 +1,18 @@
+# Togezo
+
+This is a gem for getting extreme values on a chart via Gaussian/Pearson.
+
+## Installation
+
+    $ gem install togezo
+
+## Usage
+
+    togezo = Togezo.init("hoge.dat")
+    peaks = togezo.fit
+    p peaks
+
+## Contributing
+
+Bug reports and pull requests are welcome on GitHub at https://github.com/deepneko/togezo.
+

data/Rakefile

@@ -0,0 +1,6 @@
+require "bundler/gem_tasks"
+require "rspec/core/rake_task"
+
+RSpec::Core::RakeTask.new(:spec)
+
+task :default => :spec

data/bin/console

@@ -0,0 +1,14 @@
+#!/usr/bin/env ruby
+
+require "bundler/setup"
+require "togezo"
+
+# You can add fixtures and/or initialization code here to make experimenting
+# with your gem easier. You can also use a different console, if you like.
+
+# (If you use this, don't forget to add pry to your Gemfile!)
+# require "pry"
+# Pry.start
+
+require "irb"
+IRB.start

data/bin/setup

@@ -0,0 +1,7 @@
+#!/bin/bash
+set -euo pipefail
+IFS=$'\n\t'
+
+bundle install
+
+# Do any other automated setup that you need to do here

data/lib/togezo.rb

@@ -0,0 +1,102 @@
+require 'pty'
+require 'expect'
+require 'tempfile'
+
+module Togezo
+  GAUSSIAN = 0
+  PEARSON = 1
+
+  def self.init(filename, debug=false)
+    Togezo.new(filename, debug)
+  end
+
+  class Togezo
+    attr_accessor :debug
+    attr_reader :positives, :negatives, :peaks
+
+    def initialize(filename, debug=false)
+      @datafile = File.open(filename)
+      @constant = nil
+      @positives = []
+      @negatives = []
+      @peaks = []
+    end
+
+    def fit(function=GAUSSIAN, times=1)
+      if function = GAUSSIAN
+        guess = "Gaussian"
+      elsif function = @PEARSON
+        guess = "Pearson"
+      end
+
+      PTY.spawn("cfityk") do |r, w, pid|
+        w.puts "@0 < #{@datafile.path};"
+        w.puts "guess Constant;"
+        w.puts "info peaks;"
+
+        r.sync = true
+        r.expect(/\%_1\s+Constant(\sx){4}\s+(\d+(\.\d+)*)\s/, 3) do |line|
+          @constant = line[2].to_f
+        end
+
+        1.upto(times) do |i|
+          w.puts "guess #{guess}"
+        end
+
+        w.puts "info peaks"
+        2.upto(times+1) do |i|
+          r.expect(/\%_#{i}\s+#{guess}(\s+\d+(\.\d+)*)(\s+\d+(\.\d+)*)\s/, 3) do |line|
+            x = line[1].to_f
+            y = line[3].to_f
+            @positives << [x, y]
+          end
+        end
+
+        w.close
+        r.close
+      end
+
+      negatives = Tempfile.new("temp")
+      @datafile.each_line do |line|
+        x, y = line.split(/\s/).map{|m| m.to_f}
+        if y < @constant
+          new_y = (@constant - y) + @constant
+          negatives.puts "#{x} #{new_y}"
+        end
+      end
+      negatives.flush
+      negatives.rewind
+
+      PTY.spawn("cfityk") do |r, w, pid|
+        w.puts "@0 < #{negatives.path};"
+        w.puts "guess Constant(a=#{@constant});"
+
+        1.upto(times) do |i|
+          w.puts "guess #{guess}"
+        end
+
+        w.puts "info peaks"
+        2.upto(times+1) do |i|
+          r.expect(/\%_#{i}\s+#{guess}(\s+\d+(\.\d+)*)(\s+\d+(\.\d+)*)\s/, 3) do |line|
+            x = line[1].to_f
+            y = line[3].to_f
+            @negatives << [x, y]
+          end
+        end
+
+        w.close
+        r.close
+      end
+
+      @positives.each do |x, y|
+        @peaks << [x, (y+@constant).round(5)]
+      end
+
+      @negatives.each do |x, y|
+        @peaks << [x, (@constant-y).round(5)]
+      end
+
+      @peaks.sort!
+    end
+  end
+end

data/lib/togezo/version.rb

@@ -0,0 +1,3 @@
+module Togezo
+  VERSION = "0.0.1"
+end

data/sample/sample.dat

@@ -0,0 +1,261 @@
+0 46.177
+1 46.177
+2 46.168
+3 46.157
+4 46.151
+5 46.144
+6 46.138
+7 46.135
+8 46.133
+9 46.132
+10 46.132
+11 46.133
+12 46.145
+13 46.149
+14 46.157
+15 46.166
+16 46.184
+17 46.195
+18 46.205
+19 46.214
+20 46.225
+21 46.234
+22 46.234
+23 46.241
+24 46.245
+25 46.246
+26 46.239
+27 46.235
+28 46.232
+29 46.229
+30 46.221
+31 46.214
+32 46.207
+33 46.204
+34 46.187
+35 46.173
+36 46.152
+37 46.137
+38 46.119
+39 46.104
+40 46.094
+41 46.082
+42 46.076
+43 46.061
+44 46.065
+45 46.067
+46 46.072
+47 46.08
+48 46.084
+49 46.08
+50 46.071
+51 46.057
+52 46.049
+53 46.043
+54 46.026
+55 45.999
+56 45.98
+57 45.961
+58 45.946
+59 45.937
+60 45.93
+61 45.927
+62 45.918
+63 45.91
+64 45.905
+65 45.913
+66 45.916
+67 45.915
+68 45.909
+69 45.902
+70 45.898
+71 45.89
+72 45.863
+73 45.841
+74 45.826
+75 45.806
+76 45.79
+77 45.775
+78 45.761
+79 45.751
+80 45.739
+81 45.739
+82 45.762
+83 45.778
+84 45.793
+85 45.81
+86 45.842
+87 45.864
+88 45.888
+89 45.91
+90 45.928
+91 45.942
+92 45.953
+93 45.961
+94 45.967
+95 45.97
+96 45.95
+97 45.944
+98 45.931
+99 45.916
+100 45.903
+101 45.884
+102 45.864
+103 45.848
+104 45.835
+105 45.827
+106 45.827
+107 45.82
+108 45.82
+109 45.819
+110 45.82
+111 45.828
+112 45.84
+113 45.848
+114 45.853
+115 45.853
+116 45.847
+117 45.854
+118 45.864
+119 45.876
+120 45.887
+121 45.898
+122 45.902
+123 45.91
+124 45.918
+125 45.928
+126 45.939
+127 45.937
+128 45.932
+129 45.922
+130 45.913
+131 45.903
+132 45.893
+133 45.883
+134 45.871
+135 45.86
+136 45.854
+137 45.846
+138 45.832
+139 45.824
+140 45.818
+141 45.809
+142 45.802
+143 45.801
+144 45.802
+145 45.807
+146 45.811
+147 45.821
+148 45.837
+149 45.848
+150 45.855
+151 45.864
+152 45.871
+153 45.876
+154 45.882
+155 45.878
+156 45.863
+157 45.85
+158 45.838
+159 45.819
+160 45.808
+161 45.79
+162 45.78
+163 45.766
+164 45.749
+165 45.734
+166 45.726
+167 45.717
+168 45.709
+169 45.714
+170 45.712
+171 45.706
+172 45.707
+173 45.712
+174 45.712
+175 45.718
+176 45.721
+177 45.722
+178 45.721
+179 45.713
+180 45.712
+181 45.721
+182 45.717
+183 45.7
+184 45.695
+185 45.683
+186 45.677
+187 45.67
+188 45.66
+189 45.647
+190 45.62
+191 45.582
+192 45.544
+193 45.515
+194 45.487
+195 45.463
+196 45.431
+197 45.404
+198 45.389
+199 45.378
+200 45.379
+201 45.385
+202 45.392
+203 45.395
+204 45.392
+205 45.395
+206 45.402
+207 45.402
+208 45.399
+209 45.411
+210 45.414
+211 45.42
+212 45.427
+213 45.442
+214 45.451
+215 45.452
+216 45.451
+217 45.453
+218 45.453
+219 45.442
+220 45.432
+221 45.427
+222 45.412
+223 45.396
+224 45.378
+225 45.368
+226 45.362
+227 45.352
+228 45.339
+229 45.327
+230 45.324
+231 45.314
+232 45.312
+233 45.318
+234 45.338
+235 45.376
+236 45.416
+237 45.462
+238 45.5
+239 45.534
+240 45.565
+241 45.606
+242 45.646
+243 45.68
+244 45.708
+245 45.719
+246 45.725
+247 45.723
+248 45.732
+249 45.739
+250 45.75
+251 45.767
+252 45.782
+253 45.816
+254 45.852
+255 45.875
+256 45.899
+257 45.927
+258 45.955
+259 45.986
+260 46.014

data/sample/sample.rb

@@ -0,0 +1,7 @@
+require 'togezo'
+
+togezo = Togezo.init(ARGV[0])
+p togezo.fit(Togezo::GAUSSIAN, 5)
+p togezo.positives
+p togezo.negatives
+

data/togezo.gemspec

@@ -0,0 +1,31 @@
+# coding: utf-8
+lib = File.expand_path('../lib', __FILE__)
+$LOAD_PATH.unshift(lib) unless $LOAD_PATH.include?(lib)
+require 'togezo/version'
+
+Gem::Specification.new do |spec|
+  spec.name          = "togezo"
+  spec.version       = Togezo::VERSION
+  spec.authors       = ["deepneko"]
+  spec.email         = ["deep.inu@gmail.com"]
+
+  spec.summary       = %q{Togezo provides extreme values on a chart via Gaussian/Pearson.}
+  spec.homepage      = "https://github.com/deepneko/togezo"
+
+  # Prevent pushing this gem to RubyGems.org by setting 'allowed_push_host', or
+  # delete this section to allow pushing this gem to any host.
+  #if spec.respond_to?(:metadata)
+  #  spec.metadata['allowed_push_host'] = "TODO: Set to 'http://mygemserver.com'"
+  #else
+  #  raise "RubyGems 2.0 or newer is required to protect against public gem pushes."
+  #end
+
+  spec.files         = `git ls-files -z`.split("\x0").reject { |f| f.match(%r{^(test|spec|features)/}) }
+  spec.bindir        = "exe"
+  spec.executables   = spec.files.grep(%r{^exe/}) { |f| File.basename(f) }
+  spec.require_paths = ["lib"]
+
+  spec.add_development_dependency "bundler", "~> 1.10"
+  #spec.add_development_dependency "rake", "~> 10.0"
+  spec.add_development_dependency "rspec"
+end

metadata

@@ -0,0 +1,85 @@
+--- !ruby/object:Gem::Specification
+name: togezo
+version: !ruby/object:Gem::Version
+  version: 0.0.1
+platform: ruby
+authors:
+- deepneko
+autorequire: 
+bindir: exe
+cert_chain: []
+date: 2015-11-12 00:00:00.000000000 Z
+dependencies:
+- !ruby/object:Gem::Dependency
+  name: bundler
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '1.10'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '1.10'
+- !ruby/object:Gem::Dependency
+  name: rspec
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+description: 
+email:
+- deep.inu@gmail.com
+executables: []
+extensions: []
+extra_rdoc_files: []
+files:
+- ".gitignore"
+- ".rspec"
+- ".travis.yml"
+- Gemfile
+- README.md
+- Rakefile
+- bin/console
+- bin/setup
+- lib/togezo.rb
+- lib/togezo/version.rb
+- sample/sample.dat
+- sample/sample.rb
+- togezo-0.1.0.gem
+- togezo.gemspec
+homepage: https://github.com/deepneko/togezo
+licenses: []
+metadata: {}
+post_install_message: 
+rdoc_options: []
+require_paths:
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '0'
+required_rubygems_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '0'
+requirements: []
+rubyforge_project: 
+rubygems_version: 2.4.8
+signing_key: 
+specification_version: 4
+summary: Togezo provides extreme values on a chart via Gaussian/Pearson.
+test_files: []