toccatore 0.2.3 → 0.3

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Files changed (50) hide show
  1. checksums.yaml +4 -4
  2. data/Dockerfile +6 -3
  3. data/Gemfile.lock +11 -12
  4. data/README.md +1 -1
  5. data/lib/toccatore.rb +2 -0
  6. data/lib/toccatore/base.rb +26 -184
  7. data/lib/toccatore/cli.rb +13 -1
  8. data/lib/toccatore/datacite_related.rb +77 -0
  9. data/lib/toccatore/version.rb +1 -1
  10. data/spec/base_spec.rb +49 -0
  11. data/spec/cli_spec.rb +58 -11
  12. data/spec/datacite_related_spec.rb +129 -0
  13. data/spec/fixtures/datacite_related.json +14792 -0
  14. data/spec/fixtures/datacite_related_nil.json +12 -0
  15. data/spec/fixtures/orcid_update_is_previous.json +24 -1
  16. data/spec/fixtures/vcr_cassettes/Toccatore_Base/get_doi_ra/crossref.yml +72 -0
  17. data/spec/fixtures/vcr_cassettes/Toccatore_Base/get_doi_ra/datacite.yml +74 -0
  18. data/spec/fixtures/vcr_cassettes/Toccatore_CLI/datacite_related/should_fail.yml +1408 -0
  19. data/spec/fixtures/vcr_cassettes/Toccatore_CLI/datacite_related/should_query_by_DOI.yml +1145 -0
  20. data/spec/fixtures/vcr_cassettes/Toccatore_CLI/datacite_related/should_query_by_related_identifier.yml +252 -0
  21. data/spec/fixtures/vcr_cassettes/Toccatore_CLI/datacite_related/should_succeed.yml +6348 -0
  22. data/spec/fixtures/vcr_cassettes/Toccatore_CLI/datacite_related/should_succeed_with_no_works.yml +38 -0
  23. data/spec/fixtures/vcr_cassettes/Toccatore_CLI/orcid_update/should_delete.yml +47 -49
  24. data/spec/fixtures/vcr_cassettes/Toccatore_CLI/orcid_update/should_fail.yml +21 -132
  25. data/spec/fixtures/vcr_cassettes/Toccatore_CLI/orcid_update/should_query_by_DOI.yml +731 -1016
  26. data/spec/fixtures/vcr_cassettes/Toccatore_CLI/orcid_update/should_query_by_ORCID_ID.yml +1880 -1889
  27. data/spec/fixtures/vcr_cassettes/Toccatore_CLI/orcid_update/should_succeed.yml +1576 -1591
  28. data/spec/fixtures/vcr_cassettes/Toccatore_CLI/orcid_update/should_succeed_with_no_works.yml +11 -11
  29. data/spec/fixtures/vcr_cassettes/Toccatore_DataciteRelated/get_data/should_allow_queries_by_DOI_of_the_Datacite_Metadata_Search_API.yml +38 -0
  30. data/spec/fixtures/vcr_cassettes/Toccatore_DataciteRelated/get_data/should_allow_queries_by_related_identifier_of_the_Datacite_Metadata_Search_API.yml +38 -0
  31. data/spec/fixtures/vcr_cassettes/Toccatore_DataciteRelated/get_data/should_report_if_there_are_no_works_returned_by_the_Datacite_Metadata_Search_API.yml +38 -0
  32. data/spec/fixtures/vcr_cassettes/Toccatore_DataciteRelated/get_data/should_report_if_there_are_works_returned_by_the_Datacite_Metadata_Search_API.yml +40 -0
  33. data/spec/fixtures/vcr_cassettes/{Toccatore_OrcidUpdate/get_data/should_catch_errors_with_the_Datacite_Metadata_Search_API.yml → Toccatore_DataciteRelated/get_total/with_no_works.yml} +10 -10
  34. data/spec/fixtures/vcr_cassettes/Toccatore_DataciteRelated/get_total/with_works.yml +38 -0
  35. data/spec/fixtures/vcr_cassettes/Toccatore_DataciteRelated/parse_data/should_report_if_there_are_works_returned_by_the_Datacite_Metadata_Search_API.yml +1326 -0
  36. data/spec/fixtures/vcr_cassettes/Toccatore_DataciteRelated/push_data/should_report_if_there_are_works_returned_by_the_Datacite_Metadata_Search_API.yml +6274 -0
  37. data/spec/fixtures/vcr_cassettes/Toccatore_OrcidUpdate/get_data/should_allow_queries_by_DOI_of_the_Datacite_Metadata_Search_API.yml +13 -458
  38. data/spec/fixtures/vcr_cassettes/Toccatore_OrcidUpdate/get_data/should_allow_queries_by_ORCID_ID_of_the_Datacite_Metadata_Search_API.yml +10 -143
  39. data/spec/fixtures/vcr_cassettes/Toccatore_OrcidUpdate/get_data/should_report_if_there_are_no_works_returned_by_the_Datacite_Metadata_Search_API.yml +9 -9
  40. data/spec/fixtures/vcr_cassettes/Toccatore_OrcidUpdate/get_data/should_report_if_there_are_works_returned_by_the_Datacite_Metadata_Search_API.yml +10 -121
  41. data/spec/fixtures/vcr_cassettes/Toccatore_OrcidUpdate/get_total/with_no_works.yml +10 -10
  42. data/spec/fixtures/vcr_cassettes/Toccatore_OrcidUpdate/get_total/with_works.yml +10 -10
  43. data/spec/fixtures/vcr_cassettes/Toccatore_OrcidUpdate/push_data/should_delete_claims.yml +27 -25
  44. data/spec/fixtures/vcr_cassettes/Toccatore_OrcidUpdate/push_data/should_report_if_there_are_works_returned_by_the_Datacite_Metadata_Search_API.yml +1506 -1404
  45. data/spec/fixtures/vcr_cassettes/Toccatore_OrcidUpdate/queue_jobs/should_report_if_there_are_no_works_returned_by_the_Datacite_Metadata_Search_API.yml +9 -9
  46. data/spec/fixtures/vcr_cassettes/Toccatore_OrcidUpdate/queue_jobs/should_report_if_there_are_works_returned_by_the_Datacite_Metadata_Search_API.yml +21 -182
  47. data/spec/orcid_update_spec.rb +8 -14
  48. data/spec/spec_helper.rb +1 -0
  49. data/toccatore.gemspec +1 -1
  50. metadata +24 -5
data/spec/fixtures/vcr_cassettes/Toccatore_CLI/orcid_update/should_succeed.yml CHANGED
@@ -2,7 +2,7 @@
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  http_interactions:
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  - request:
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  method: get
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- uri: https://search.datacite.org/api?fl=doi,creator,title,publisher,publicationYear,resourceTypeGeneral,datacentre_symbol,relatedIdentifier,nameIdentifier,xml,minted,updated&fq=updated:%5B2015-04-07T00:00:00Z%20TO%202015-04-08T23:59:59Z%5D%20AND%20has_metadata:true%20AND%20is_active:true&q=nameIdentifier:ORCID%5C:*&rows=0&start=0&wt=json
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+ uri: https://search.datacite.org/api?fl=doi,resourceTypeGeneral,relatedIdentifier,nameIdentifier,minted,updated&fq=updated:%5B2015-04-07T00:00:00Z%20TO%202015-04-08T23:59:59Z%5D%20AND%20has_metadata:true%20AND%20is_active:true&q=nameIdentifier:ORCID%5C:*&rows=0&start=0&wt=json
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@@ -16,28 +16,30 @@ http_interactions:
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  message: ''
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  headers:
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  Connection:
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  body:
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- string: '{"responseHeader":{"status":0,"QTime":181},"response":{"numFound":55,"start":0,"docs":[]}}
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+ string: '{"responseHeader":{"status":0,"QTime":48},"response":{"numFound":55,"start":0,"docs":[]}}
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  '
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  http_version:
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- recorded_at: Thu, 02 Feb 2017 14:28:56 GMT
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+ recorded_at: Sat, 11 Mar 2017 10:47:08 GMT
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  - request:
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  method: get
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- uri: https://search.datacite.org/api?fl=doi,creator,title,publisher,publicationYear,resourceTypeGeneral,datacentre_symbol,relatedIdentifier,nameIdentifier,xml,minted,updated&fq=updated:%5B2015-04-07T00:00:00Z%20TO%202015-04-08T23:59:59Z%5D%20AND%20has_metadata:true%20AND%20is_active:true&q=nameIdentifier:ORCID%5C:*&rows=1000&start=0&wt=json
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+ uri: https://search.datacite.org/api?fl=doi,resourceTypeGeneral,relatedIdentifier,nameIdentifier,minted,updated&fq=updated:%5B2015-04-07T00:00:00Z%20TO%202015-04-08T23:59:59Z%5D%20AND%20has_metadata:true%20AND%20is_active:true&q=nameIdentifier:ORCID%5C:*&rows=1000&start=0&wt=json
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  body:
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  string: ''
@@ -51,136 +53,27 @@ http_interactions:
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  message: ''
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  headers:
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- Date:
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- - Thu, 02 Feb 2017 14:28:56 GMT
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+ Access-Control-Allow-Methods:
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  Content-Type:
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- Access-Control-Allow-Origin:
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- - "*"
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- string: '{"responseHeader":{"status":0,"QTime":9},"response":{"numFound":55,"start":0,"docs":[{"minted":"2014-06-02T01:33:35Z","datacentre_symbol":"FIGSHARE.ARS","xml":"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","updated":"2015-04-08T13:56:40Z","doi":"10.6084/M9.FIGSHARE.1041547","creator":["Ann
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- Mayo"],"publisher":"Figshare","title":["Jills of All Trades: Ant Diversity
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- and Versatility in the Cross Timbers Ecoregion"],"nameIdentifier":["ORCID:0000-0002-3546-1048"],"publicationYear":"2014","resourceTypeGeneral":"Dataset"},{"minted":"2015-04-07T03:09:59Z","datacentre_symbol":"FIGSHARE.ARS","xml":"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","updated":"2015-04-07T03:09:59Z","doi":"10.6084/M9.FIGSHARE.1368269","creator":["Peter
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- Arend"],"publisher":"Figshare","title":["ABO phenotype and innate isoagglutinin
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- specificities as they arise from glycosidic exclusion and relate to human
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- reproduction. A hypothesis*"],"nameIdentifier":["ORCID:0000-0002-4000-4167"],"publicationYear":"2015","resourceTypeGeneral":"Dataset"},{"minted":"2015-04-07T03:22:11Z","datacentre_symbol":"FIGSHARE.ARS","xml":"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","updated":"2015-04-07T03:22:11Z","doi":"10.6084/M9.FIGSHARE.1368484","creator":["Jorge
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- H Ramirez"],"publisher":"Figshare","title":["Database - Medical Education
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76
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