RubyGems - toccatore - Versions diffs - 0.1 - Mend

toccatore 0.1

Files changed (30) hide show

checksums.yaml +7 -0
data/.gitignore +50 -0
data/.travis.yml +19 -0
data/CHANGELOG.md +5 -0
data/Gemfile +3 -0
data/Gemfile.lock +110 -0
data/LICENSE.md +21 -0
data/README.md +28 -0
data/bin/toccatore +5 -0
data/lib/toccatore.rb +1 -0
data/lib/toccatore/base.rb +361 -0
data/lib/toccatore/cli.rb +38 -0
data/lib/toccatore/orcid_update.rb +56 -0
data/lib/toccatore/version.rb +3 -0
data/spec/cli_spec.rb +29 -0
data/spec/fixtures/orcid_update.json +1015 -0
data/spec/fixtures/orcid_update_nil.json +12 -0
data/spec/fixtures/vcr_cassettes/Toccatore_CLI/orcid_update/should_fail.yml +149 -0
data/spec/fixtures/vcr_cassettes/Toccatore_CLI/orcid_update/should_succeed.yml +3453 -0
data/spec/fixtures/vcr_cassettes/Toccatore_OrcidUpdate/get_data/should_report_if_there_are_no_works_returned_by_the_Datacite_Metadata_Search_API.yml +38 -0
data/spec/fixtures/vcr_cassettes/Toccatore_OrcidUpdate/get_data/should_report_if_there_are_works_returned_by_the_Datacite_Metadata_Search_API.yml +149 -0
data/spec/fixtures/vcr_cassettes/Toccatore_OrcidUpdate/get_total/with_no_works.yml +38 -0
data/spec/fixtures/vcr_cassettes/Toccatore_OrcidUpdate/get_total/with_works.yml +38 -0
data/spec/fixtures/vcr_cassettes/Toccatore_OrcidUpdate/push_data/should_report_if_there_are_works_returned_by_the_Datacite_Metadata_Search_API.yml +3307 -0
data/spec/fixtures/vcr_cassettes/Toccatore_OrcidUpdate/queue_jobs/should_report_if_there_are_no_works_returned_by_the_Datacite_Metadata_Search_API.yml +38 -0
data/spec/fixtures/vcr_cassettes/Toccatore_OrcidUpdate/queue_jobs/should_report_if_there_are_works_returned_by_the_Datacite_Metadata_Search_API.yml +236 -0
data/spec/orcid_update_spec.rb +120 -0
data/spec/spec_helper.rb +91 -0
data/toccatore.gemspec +37 -0
metadata +314 -0

data/spec/fixtures/orcid_update_nil.json ADDED

@@ -0,0 +1,12 @@
+{
+  "responseHeader": {
+    "status": 0,
+    "QTime": 1
+  },
+  "response": {
+    "numFound": 0,
+    "start": 0,
+    "docs": [
+    ]
+  }
+}

data/spec/fixtures/vcr_cassettes/Toccatore_CLI/orcid_update/should_fail.yml ADDED

@@ -0,0 +1,149 @@
+---
+http_interactions:
+- request:
+    method: get
+    uri: https://search.datacite.org/api?fl=doi,creator,title,publisher,publicationYear,resourceTypeGeneral,datacentre_symbol,relatedIdentifier,nameIdentifier,xml,minted,updated&fq=updated:%5B2015-04-07T00:00:00Z%20TO%202015-04-08T23:59:59Z%5D%20AND%20has_metadata:true%20AND%20is_active:true&q=nameIdentifier:ORCID%5C:*&rows=1000&start=0&wt=json
+    body:
+      encoding: US-ASCII
+      string: ''
+    headers:
+      User-Agent:
+      - Maremma - https://github.com/datacite/maremma
+      Accept:
+      - text/html,application/json,application/xml;q=0.9, text/plain;q=0.8,image/png,*/*;q=0.5
+  response:
+    status:
+      code: 200
+      message: ''
+    headers:
+      Server:
+      - openresty/1.11.2.1
+      Date:
+      - Mon, 30 Jan 2017 07:57:17 GMT
+      Content-Type:
+      - application/json;charset=UTF-8
+      Connection:
+      - keep-alive
+      Access-Control-Allow-Origin:
+      - "*"
+      Access-Control-Allow-Methods:
+      - GET, POST, OPTIONS
+    body:
+      encoding: UTF-8
+      string: '{"responseHeader":{"status":0,"QTime":0},"response":{"numFound":55,"start":0,"docs":[{"minted":"2014-06-02T01:33:35Z","datacentre_symbol":"FIGSHARE.ARS","xml":"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","updated":"2015-04-08T13:56:40Z","doi":"10.6084/M9.FIGSHARE.1041547","creator":["Ann
+        Mayo"],"publisher":"Figshare","title":["Jills of All Trades: Ant Diversity
+        and Versatility in the Cross Timbers Ecoregion"],"nameIdentifier":["ORCID:0000-0002-3546-1048"],"publicationYear":"2014","resourceTypeGeneral":"Dataset"},{"minted":"2015-04-07T03:09:59Z","datacentre_symbol":"FIGSHARE.ARS","xml":"PD94bWwgdmVyc2lvbj0iMS4wIiBlbmNvZGluZz0iVVRGLTgiPz4KPHJlc291cmNlIHhtbG5zPSJodHRwOi8vZGF0YWNpdGUub3JnL3NjaGVtYS9rZXJuZWwtMyIgeG1sbnM6eHNpPSJodHRwOi8vd3d3LnczLm9yZy8yMDAxL1hNTFNjaGVtYS1pbnN0YW5jZSIgeHNpOnNjaGVtYUxvY2F0aW9uPSJodHRwOi8vZGF0YWNpdGUub3JnL3NjaGVtYS9rZXJuZWwtMyBodHRwOi8vc2NoZW1hLmRhdGFjaXRlLm9yZy9tZXRhL2tlcm5lbC0zL21ldGFkYXRhLnhzZCI+PGlkZW50aWZpZXIgaWRlbnRpZmllclR5cGU9IkRPSSI+MTAuNjA4NC9NOS5GSUdTSEFSRS4xMzY4MjY5PC9pZGVudGlmaWVyPjx0aXRsZXM+PHRpdGxlPkFCTyBwaGVub3R5cGUgYW5kIGlubmF0ZSBpc29hZ2dsdXRpbmluIHNwZWNpZmljaXRpZXMgYXMgdGhleSBhcmlzZSBmcm9tIGdseWNvc2lkaWMgZXhjbHVzaW9uIGFuZCByZWxhdGUgdG8gaHVtYW4gcmVwcm9kdWN0aW9uLiAgQSBoeXBvdGhlc2lzKjwvdGl0bGU+PC90aXRsZXM+PHB1Ymxpc2hlcj5GaWdzaGFyZTwvcHVibGlzaGVyPjxwdWJsaWNhdGlvblllYXI+MjAxNTwvcHVibGljYXRpb25ZZWFyPjxyZXNvdXJjZVR5cGUgcmVzb3VyY2VUeXBlR2VuZXJhbD0iRGF0YXNldCI+UGFwZXI8L3Jlc291cmNlVHlwZT48cmlnaHRzTGlzdD48cmlnaHRzIHJpZ2h0c1VSST0iaHR0cDovL2NyZWF0aXZlY29tbW9ucy5vcmcvbGljZW5zZXMvYnkvMy4wL3VzLyI+Q0MtQlk8L3JpZ2h0cz48L3JpZ2h0c0xpc3Q+PGNyZWF0b3JzPjxjcmVhdG9yPjxjcmVhdG9yTmFtZT5QZXRlciBBcmVuZDwvY3JlYXRvck5hbWU+PG5hbWVJZGVudGlmaWVyIG5hbWVJZGVudGlmaWVyU2NoZW1lPSJPUkNJRCI+MDAwMC0wMDAyLTQwMDAtNDE2NzwvbmFtZUlkZW50aWZpZXI+PC9jcmVhdG9yPjwvY3JlYXRvcnM+PC9yZXNvdXJjZT4=","updated":"2015-04-07T03:09:59Z","doi":"10.6084/M9.FIGSHARE.1368269","creator":["Peter
+        Arend"],"publisher":"Figshare","title":["ABO phenotype and innate isoagglutinin
+        specificities as they arise from glycosidic exclusion and relate to human
+        reproduction.  A hypothesis*"],"nameIdentifier":["ORCID:0000-0002-4000-4167"],"publicationYear":"2015","resourceTypeGeneral":"Dataset"},{"minted":"2015-04-07T03:22:11Z","datacentre_symbol":"FIGSHARE.ARS","xml":"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","updated":"2015-04-07T03:22:11Z","doi":"10.6084/M9.FIGSHARE.1368484","creator":["Jorge
+        H Ramirez"],"publisher":"Figshare","title":["Database - Medical Education
+        - Part I - The Double Standard Test. (version 1.0)"],"nameIdentifier":["ORCID:0000-0001-6176-2816"],"publicationYear":"2015","resourceTypeGeneral":"Image"},{"minted":"2015-04-07T04:17:39Z","datacentre_symbol":"FIGSHARE.ARS","xml":"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","updated":"2015-04-07T04:17:39Z","doi":"10.6084/M9.FIGSHARE.1368488","creator":["Ijcsis
+        Editor"],"publisher":"Figshare","title":["A Novel Approach to Malware Detection
+        using Static Classification"],"nameIdentifier":["ORCID:0000-0003-3796-827X"],"publicationYear":"2015","resourceTypeGeneral":"Dataset"},{"minted":"2015-04-07T10:04:56Z","datacentre_symbol":"FIGSHARE.ARS","xml":"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","updated":"2015-04-07T10:04:57Z","doi":"10.6084/M9.FIGSHARE.1368581","creator":["smund
+        Ervik"],"publisher":"Figshare","title":["Domain decomposition without the
+        agonizing pain"],"nameIdentifier":["ORCID:0000-0003-1073-887X"],"publicationYear":"2015","resourceTypeGeneral":"Dataset"},{"minted":"2015-04-07T13:40:59Z","datacentre_symbol":"FIGSHARE.ARS","xml":"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","updated":"2015-04-07T13:40:59Z","doi":"10.6084/M9.FIGSHARE.1368663","creator":["Fredy
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+        Mayo"],"publisher":"Figshare","title":["Comanche harvester ant on Todd Island
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+        Mayo"],"publisher":"Figshare","title":["Nest Structure of the Comanche Harvester
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+        Mayo"],"publisher":"Figshare","title":["Tracking the Comanche Harvester Ant
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+        Mayo"],"publisher":"Figshare","title":["Nest Distribution of the Comanche
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+        Mayo"],"publisher":"Figshare","title":["Ant Sampling Sites in the Fort Worth
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+        Mayo"],"publisher":"Figshare","title":["Door Construction Behavior in the
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+        Roberson"],"publisher":"Figshare","title":["Saccharomyces cerevisiae 3 prime
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+        Mayo"],"publisher":"Figshare","title":["Testing central place foraging theory
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+        Mayo"],"publisher":"Figshare","title":["Preliminary Assessment  of the Arthropod
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+        Mayo","Jody Kocsis","Benjamin J. Swartz","Graeme Taylor"],"publisher":"Figshare","title":["Pedillus
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