theoj 1.3.4 → 1.4.0

checksums.yaml

@@ -1,7 +1,7 @@
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data/CHANGELOG.md

@@ -1,5 +1,18 @@
 # Changelog
 
+## 1.4.0 (2022-08-01)
+
+- Added method to Journal to get year/volume/issue information for any date
+- Submission metadata now takes into account published paper status
+
+## 1.3.6 (2022-07-11)
+
+- Improve parsing os author names
+
+## 1.3.5 (2022-07-01)
+
+- Added configuration for JuliaCon
+
 ## 1.3.4 (2022-05-29)
 
 - Use Faraday v2 (updated Octokit and other dependencies)

data/lib/theoj/author.rb

@@ -45,7 +45,19 @@ module Theoj
     private
 
     def parse_name(author_name)
-      @parsed_name = Nameable::Latin.new.parse(strip_footnotes(author_name))
+      if author_name.is_a? Hash
+        g = author_name["given-names"] || author_name["given"] || author_name["first"] || author_name["firstname"]
+        m = author_name["dropping-particle"]
+        s = author_name["surname"] || author_name["family"]
+
+        g = strip_footnotes(g) unless g.nil?
+        s = strip_footnotes(s) unless s.nil?
+
+        @parsed_name = m.nil? ? Nameable::Latin.new(g, s) : Nameable::Latin.new(g, m, s)
+      else
+        @parsed_name = Nameable::Latin.new.parse(strip_footnotes(author_name))
+      end
+
       @name = @parsed_name.to_nameable
     end
 

data/lib/theoj/journal.rb

@@ -42,6 +42,15 @@ module Theoj
       reviews_url
     end
 
+    def year_volume_issue_for_date(d)
+      d = Date.parse(d) if d.is_a? String
+      year = d.year
+      volume = year - (launch_year - 1)
+      issue = (1 + ((year * 12 + d.month) - (launch_year * 12 + launch_month)))
+
+      [year, volume, issue]
+    end
+
     private
 
     def set_data(custom_data)

data/lib/theoj/journals_data.rb

@@ -1,3 +1,5 @@
+require "date"
+
 module Theoj
   JOURNALS_DATA = {
     joss: {
@@ -20,6 +22,16 @@ module Theoj
       reviews_repository: "openjournals/jose-reviews",
       deposit_url: "https://joss.theoj.org/papers/api_deposit"
     },
+    jcon: {
+      doi_prefix: "10.21105",
+      url: "https://proceedings.juliacon.org/",
+      name: "The Proceedings of the JuliaCon Conferences",
+      alias: "jcon",
+      launch_date: "2019-07-21",
+      papers_repository: "JuliaCon/juliacon-proceedings-papers",
+      reviews_repository: "JuliaCon/juliacon-proceedings-reviews",
+      deposit_url: "https://proceedings.juliacon.org/papers/api_deposit"
+    },
     test_journal: {
       doi_prefix: "10.21105",
       url: "https://test.joss.theoj.org/",

data/lib/theoj/paper.rb

@@ -121,6 +121,7 @@ module Theoj
 
         # Loop through the authors block and build up the affiliation
         authors_metadata.each do |author|
+          author['name'] = author.dup if author['name'].nil?
           affiliation_index = author['affiliation']
           failure "Author (#{author['name']}) is missing affiliation" if affiliation_index.nil?
           begin

data/lib/theoj/submission.rb

@@ -20,58 +20,105 @@ module Theoj
     # Create the payload to use to post for depositing with Open Journals
     def deposit_payload
       {
-        id: review_issue.issue_id,
+        id: metadata_info[:review_issue_id],
         metadata: Base64.encode64(metadata_payload),
-        doi: paper_doi,
-        archive_doi: review_issue.archive,
+        doi: metadata_info[:doi],
+        archive_doi: metadata_info[:archive_doi],
         citation_string: citation_string,
-        title: paper.title
+        title: metadata_info[:title]
       }
     end
 
     # Create a metadata json payload
     def metadata_payload
-      metadata = {
+      {
         paper: {
-          title: paper.title,
-          tags: paper.tags,
-          languages: paper.languages,
-          authors: paper.authors.collect { |a| a.to_h },
-          doi: paper_doi,
-          archive_doi: review_issue.archive,
-          repository_address: review_issue.target_repository,
-          editor: review_issue.editor,
-          reviewers: review_issue.reviewers.collect(&:strip),
-          volume: journal.current_volume,
-          issue: journal.current_issue,
-          year: journal.current_year,
-          page: review_issue.issue_id,
+          title: metadata_info[:title],
+          tags: metadata_info[:tags],
+          languages: metadata_info[:languages],
+          authors: metadata_info[:authors],
+          doi: metadata_info[:doi],
+          archive_doi: metadata_info[:archive_doi],
+          repository_address: metadata_info[:software_repository_url],
+          editor: metadata_info[:review_editor],
+          reviewers: metadata_info[:reviewers].collect(&:strip),
+          volume: metadata_info[:volume],
+          issue: metadata_info[:issue],
+          year: metadata_info[:year],
+          page: metadata_info[:page]
         }
-      }
-
-      metadata.to_json
+      }.to_json
     end
 
     # Create metadata used to generate PDF/JATS outputs
     def article_metadata
-        metadata = {
-          title: paper.title,
-          tags: paper.tags,
-          authors: paper.authors.collect { |a| a.to_h },
-          doi: paper_doi,
-          software_repository_url: review_issue.target_repository,
-          reviewers: review_issue.reviewers.collect{|r| user_login(r)},
-          volume: journal.current_volume,
-          issue: journal.current_issue,
-          year: journal.current_year,
-          page: review_issue.issue_id,
-          journal_alias: journal.alias,
-          software_review_url: journal.reviews_repository_url(review_issue.issue_id),
-          archive_doi: review_issue.archive,
-          citation_string: citation_string
-        }
+      {
+        title: metadata_info[:title],
+        tags: metadata_info[:tags],
+        authors: metadata_info[:authors],
+        doi: metadata_info[:doi],
+        software_repository_url: metadata_info[:software_repository_url],
+        reviewers: metadata_info[:reviewers].collect{|r| user_login(r)},
+        volume: metadata_info[:volume],
+        issue: metadata_info[:issue],
+        year: metadata_info[:year],
+        page: metadata_info[:page],
+        journal_alias: metadata_info[:journal_alias],
+        software_review_url: metadata_info[:software_review_url],
+        archive_doi: metadata_info[:archive_doi],
+        citation_string: metadata_info[:citation_string],
+        editor: metadata_info[:editor],
+        submitted_at: metadata_info[:submitted_at],
+        published_at: metadata_info[:published_at]
+      }
+    end
+
+    def metadata_info
+      @metadata_info ||= all_metadata
+    end
+
+    def deposit!(secret)
+      parameters = deposit_payload.merge(secret: secret)
+      Faraday.post(journal.data[:deposit_url], parameters.to_json, {"Content-Type" => "application/json"})
+    end
+
+    def citation_string
+      metadata_info[:citation_string]
+    end
+
+    def paper_id
+      journal.paper_id_from_issue(review_issue.issue_id)
+    end
+
+    def paper_doi
+      journal.paper_doi_for_id(paper_id)
+    end
 
-        metadata.merge(editor_info, dates_info)
+    def all_metadata
+      metadata = {
+        title: paper.title,
+        tags: paper.tags,
+        languages: paper.languages,
+        authors: paper.authors.collect { |a| a.to_h },
+        doi: paper_doi,
+        software_repository_url: review_issue.target_repository,
+        review_issue_id: review_issue.issue_id,
+        review_editor: review_issue.editor,
+        reviewers: review_issue.reviewers,
+        volume: journal.current_volume,
+        issue: journal.current_issue,
+        year: journal.current_year,
+        page: review_issue.issue_id,
+        journal_alias: journal.alias,
+        journal_name: journal.name,
+        software_review_url: journal.reviews_repository_url(review_issue.issue_id),
+        archive_doi: review_issue.archive,
+        citation_author: paper.citation_author
+      }
+
+      metadata.merge!(editor_info, dates_info)
+      metadata[:citation_string] = build_citation_string(metadata)
+      metadata
     end
 
     def editor_info
@@ -106,30 +153,24 @@ module Theoj
           dates_info[:submitted_at] = format_date(info[:submitted]) if info[:submitted]
           dates_info[:published_at] = format_date(info[:accepted]) if info[:accepted]
         end
+
+        if dates_info[:published_at]
+          yvi = journal.year_volume_issue_for_date(Date.parse(dates_info[:published_at]))
+          dates_info[:year] = yvi[0]
+          dates_info[:volume] = yvi[1]
+          dates_info[:issue] = yvi[2]
+        end
       end
 
       dates_info
     end
 
-    def deposit!(secret)
-      parameters = deposit_payload.merge(secret: secret)
-      Faraday.post(journal.data[:deposit_url], parameters.to_json, {"Content-Type" => "application/json"})
-    end
-
-    def citation_string
-      paper_year = Time.now.strftime('%Y')
-      "#{paper.citation_author}, (#{paper_year}). #{paper.title}. #{journal.name}, #{journal.current_volume}(#{journal.current_issue}), #{review_issue.issue_id}, https://doi.org/#{paper_doi}"
-    end
-
-    def paper_id
-      journal.paper_id_from_issue(review_issue.issue_id)
-    end
+    private
 
-    def paper_doi
-      journal.paper_doi_for_id(paper_id)
+    def build_citation_string(metadata)
+      "#{metadata[:citation_author]}, (#{metadata[:year]}). #{metadata[:title]}. #{metadata[:journal_name]}, #{metadata[:volume]}(#{metadata[:issue]}), #{metadata[:review_issue_id]}, https://doi.org/#{metadata[:doi]}"
     end
 
-    private
     def format_date(date_string)
       Date.parse(date_string.to_s).strftime("%Y-%m-%d")
     rescue Date::Error

data/lib/theoj/version.rb

@@ -1,3 +1,3 @@
 module Theoj
-  VERSION = "1.3.4"
+  VERSION = "1.4.0"
 end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: theoj
 version: !ruby/object:Gem::Version
-  version: 1.3.4
+  version: 1.4.0
 platform: ruby
 authors:
 - Juanjo Bazán
 autorequire:
 bindir: bin
 cert_chain: []
-date: 2022-05-29 00:00:00.000000000 Z
+date: 2022-08-01 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: octokit
@@ -16,28 +16,28 @@ dependencies:
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: '4.23'
+        version: 5.1.0
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: '4.23'
+        version: 5.1.0
 - !ruby/object:Gem::Dependency
   name: faraday
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: 2.3.0
+        version: 2.4.0
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: 2.3.0
+        version: 2.4.0
 - !ruby/object:Gem::Dependency
   name: openjournals-nameable
   requirement: !ruby/object:Gem::Requirement
@@ -72,14 +72,14 @@ dependencies:
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: 1.4.3
+        version: 1.5.0
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: 1.4.3
+        version: 1.5.0
 - !ruby/object:Gem::Dependency
   name: rake
   requirement: !ruby/object:Gem::Requirement