text-checkm 0.7
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +7 -0
- data/.document +5 -0
- data/.gitignore +312 -0
- data/.idea/$CACHE_FILE$ +26 -0
- data/.idea/.gitignore +6 -0
- data/.idea/go.imports.xml +6 -0
- data/.idea/inspectionProfiles/Project_Default.xml +17 -0
- data/.idea/inspectionProfiles/profiles_settings.xml +7 -0
- data/.idea/misc.xml +9 -0
- data/.idea/modules.xml +8 -0
- data/.idea/vcs.xml +6 -0
- data/.rubocop.yml +144 -0
- data/.ruby-version +1 -0
- data/.simplecov +7 -0
- data/CHANGELOG.md +7 -0
- data/Gemfile +2 -0
- data/Gemfile.lock +98 -0
- data/LICENSE.md +23 -0
- data/README.md +23 -0
- data/Rakefile +36 -0
- data/SPEC.txt +468 -0
- data/lib/text/checkm.rb +2 -0
- data/lib/text/checkm/checksum.rb +40 -0
- data/lib/text/checkm/entry.rb +77 -0
- data/lib/text/checkm/manifest.rb +115 -0
- data/lib/text/checkm/module_info.rb +16 -0
- data/rakelib/bundle.rake +8 -0
- data/rakelib/coverage.rake +5 -0
- data/rakelib/rubocop.rake +16 -0
- data/spec/.rubocop.yml +19 -0
- data/spec/data/merritt-manifest.checkm +9 -0
- data/spec/data/myfirst.checkm +5 -0
- data/spec/data/test_1/1 +1 -0
- data/spec/data/two-level-manifest.checkm +8 -0
- data/spec/lib/text/checkm/checksum_spec.rb +24 -0
- data/spec/lib/text/checkm/entry_spec.rb +52 -0
- data/spec/lib/text/checkm/manifest_spec.rb +157 -0
- data/spec/spec_helper.rb +23 -0
- data/text-checkm.gemspec +29 -0
- data/text-checkm.iml +51 -0
- metadata +236 -0
checksums.yaml
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---
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SHA256:
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metadata.gz: f46c51dd805d1e12eb1d3c91aa0f238f9f0760951e585c2b47f4bd03e34fe253
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data.tar.gz: 68d29caa7df2d95a133f05b301939569819c0c5bd993bedc4a2cc7e94e5a3db0
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SHA512:
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metadata.gz: 1c99abc9034038707e8edc566cb7cc91996d098840d98dd63305c780667b2f192969191c04b1216169f6804a7701c7a3ca2780b6f8a173303ff564f1f1486f71
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data.tar.gz: f8e3c007325b03ce145cb477f3bae2317a5d8fa0da89b6b52b80aef2658ec74beada9827e75465d005790e1b32c6da1532cda6530e13a0847bd8d65e7e9b85bc
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data/.document
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data/.gitignore
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############################################################
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# Custom ignores
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# github-markdown-preview previews
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*.md.html
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# Additional IDEA/RubyMine ignores
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.idea/.rakeTasks
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# Build/test artifacts
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/artifacts/
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############################################################
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# Generated ignores
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#### joe made this: http://goel.io/joe
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#### ruby ####
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*.gem
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*.rbc
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/.config
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/coverage/
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/InstalledFiles
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/pkg/
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/spec/reports/
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/spec/examples.txt
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/test/tmp/
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/test/version_tmp/
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/tmp/
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# Used by dotenv library to load environment variables.
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# .env
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# Ignore Byebug command history file.
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.byebug_history
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## Specific to RubyMotion:
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.dat*
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.repl_history
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build/
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*.bridgesupport
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build-iPhoneOS/
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build-iPhoneSimulator/
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## Specific to RubyMotion (use of CocoaPods):
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#
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# We recommend against adding the Pods directory to your .gitignore. However
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# you should judge for yourself, the pros and cons are mentioned at:
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# https://guides.cocoapods.org/using/using-cocoapods.html#should-i-check-the-pods-directory-into-source-control
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#
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# vendor/Pods/
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## Documentation cache and generated files:
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/.yardoc/
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/_yardoc/
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/doc/
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/rdoc/
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## Environment normalization:
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/.bundle/
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/vendor/bundle
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/lib/bundler/man/
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# for a library or gem, you might want to ignore these files since the code is
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# intended to run in multiple environments; otherwise, check them in:
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# Gemfile.lock
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# .ruby-version
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# .ruby-gemset
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# unless supporting rvm < 1.11.0 or doing something fancy, ignore this:
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.rvmrc
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# Used by RuboCop. Remote config files pulled in from inherit_from directive.
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# .rubocop-https?--*
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#### rails ####
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*.rbc
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capybara-*.html
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.rspec
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/db/*.sqlite3
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/db/*.sqlite3-journal
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/db/*.sqlite3-[0-9]*
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/public/system
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/coverage/
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/spec/tmp
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*.orig
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rerun.txt
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pickle-email-*.html
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# Ignore all logfiles and tempfiles.
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/log/*
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/tmp/*
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!/log/.keep
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!/tmp/.keep
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# TODO Comment out this rule if you are OK with secrets being uploaded to the repo
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config/initializers/secret_token.rb
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config/master.key
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# Only include if you have production secrets in this file, which is no longer a Rails default
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# config/secrets.yml
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# dotenv, dotenv-rails
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# TODO Comment out these rules if environment variables can be committed
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.env
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.env.*
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## Environment normalization:
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/.bundle
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/vendor/bundle
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# these should all be checked in to normalize the environment:
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# Gemfile.lock, .ruby-version, .ruby-gemset
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# unless supporting rvm < 1.11.0 or doing something fancy, ignore this:
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.rvmrc
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# if using bower-rails ignore default bower_components path bower.json files
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/vendor/assets/bower_components
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*.bowerrc
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bower.json
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# Ignore pow environment settings
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.powenv
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# Ignore Byebug command history file.
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.byebug_history
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# Ignore node_modules
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node_modules/
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# Ignore precompiled javascript packs
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/public/packs
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/public/packs-test
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/public/assets
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# Ignore yarn files
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/yarn-error.log
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yarn-debug.log*
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.yarn-integrity
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# Ignore uploaded files in development
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/storage/*
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!/storage/.keep
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/public/uploads
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#### emacs ####
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# -*- mode: gitignore; -*-
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*~
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\#*\#
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/.emacs.desktop
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/.emacs.desktop.lock
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*.elc
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auto-save-list
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tramp
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.\#*
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# Org-mode
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.org-id-locations
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*_archive
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# flymake-mode
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*_flymake.*
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# eshell files
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/eshell/history
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/eshell/lastdir
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# elpa packages
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/elpa/
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# reftex files
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*.rel
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# AUCTeX auto folder
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/auto/
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# cask packages
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.cask/
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dist/
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# Flycheck
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flycheck_*.el
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# server auth directory
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/server/
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# projectiles files
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.projectile
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# directory configuration
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.dir-locals.el
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# network security
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/network-security.data
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#### jetbrains ####
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# Covers JetBrains IDEs: IntelliJ, RubyMine, PhpStorm, AppCode, PyCharm, CLion, Android Studio, WebStorm and Rider
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# Reference: https://intellij-support.jetbrains.com/hc/en-us/articles/206544839
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# User-specific stuff
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.idea/**/workspace.xml
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.idea/**/tasks.xml
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.idea/**/usage.statistics.xml
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.idea/**/dictionaries
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.idea/**/shelf
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# Generated files
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.idea/**/contentModel.xml
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# Sensitive or high-churn files
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.idea/**/dataSources/
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.idea/**/dataSources.ids
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.idea/**/dataSources.local.xml
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.idea/**/sqlDataSources.xml
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.idea/**/dynamic.xml
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.idea/**/uiDesigner.xml
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.idea/**/dbnavigator.xml
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# Gradle
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.idea/**/gradle.xml
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.idea/**/libraries
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# Gradle and Maven with auto-import
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# When using Gradle or Maven with auto-import, you should exclude module files,
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# since they will be recreated, and may cause churn. Uncomment if using
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# auto-import.
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# .idea/artifacts
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# .idea/compiler.xml
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# .idea/jarRepositories.xml
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# .idea/modules.xml
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# .idea/*.iml
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# .idea/modules
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# *.iml
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# *.ipr
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# CMake
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cmake-build-*/
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# Mongo Explorer plugin
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.idea/**/mongoSettings.xml
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# File-based project format
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*.iws
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# IntelliJ
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out/
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.idea_modules/
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# JIRA plugin
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atlassian-ide-plugin.xml
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# Cursive Clojure plugin
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# Crashlytics plugin (for Android Studio and IntelliJ)
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com_crashlytics_export_strings.xml
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crashlytics.properties
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crashlytics-build.properties
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fabric.properties
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# Editor-based Rest Client
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# Android studio 3.1+ serialized cache file
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#### macos ####
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# General
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.DS_Store
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.AppleDouble
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.LSOverride
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# Icon must end with two \r
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Icon
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.DocumentRevisions-V100
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.fseventsd
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.Spotlight-V100
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.TemporaryItems
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.Trashes
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.VolumeIcon.icns
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.com.apple.timemachine.donotpresent
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# Directories potentially created on remote AFP share
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.AppleDB
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.AppleDesktop
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Network Trash Folder
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Temporary Items
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.apdisk
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# Ignore master key for decrypting credentials and more.
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/config/master.key
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/public/packs
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/public/packs-test
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/node_modules
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/yarn-error.log
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yarn-debug.log*
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.yarn-integrity
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data/.idea/$CACHE_FILE$
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<?xml version="1.0" encoding="UTF-8"?>
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<project version="4">
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<component name="NodePackageJsonFileManager">
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<packageJsonPaths />
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</component>
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<component name="ProjectInspectionProfilesVisibleTreeState">
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<entry key="Project Default">
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<profile-state>
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<expanded-state>
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<State />
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<State>
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<id>Declaration redundancyGo</id>
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</State>
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<State>
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<id>Go</id>
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</State>
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</expanded-state>
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<selected-state>
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<State>
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<id>GoUnusedLabel</id>
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</State>
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</selected-state>
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</profile-state>
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</entry>
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</component>
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</project>
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data/.idea/.gitignore
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<component name="InspectionProjectProfileManager">
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<profile version="1.0">
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<option name="myName" value="Project Default" />
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<inspection_tool class="GoNameStartsWithPackageName" enabled="false" level="WEAK WARNING" enabled_by_default="false" />
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<inspection_tool class="GoSnakeCaseUsage" enabled="false" level="WEAK WARNING" enabled_by_default="false" />
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<inspection_tool class="GoUnusedGlobalVariable" enabled="false" level="WEAK WARNING" enabled_by_default="false" />
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<inspection_tool class="GoUnusedVariable" enabled="true" level="WARNING" enabled_by_default="true" />
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<inspection_tool class="Rubocop" enabled="false" level="WARNING" enabled_by_default="false" />
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<inspection_tool class="RubyCaseWithoutElseBlockInspection" enabled="false" level="WARNING" enabled_by_default="false" />
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<inspection_tool class="RubyStringKeysInHashInspection" enabled="true" level="INFORMATION" enabled_by_default="true" />
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<inspection_tool class="SpellCheckingInspection" enabled="false" level="TYPO" enabled_by_default="false">
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<option name="processCode" value="true" />
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<option name="processLiterals" value="true" />
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<option name="processComments" value="true" />
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</inspection_tool>
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</profile>
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</component>
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<project version="4">
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+
<component name="JavaScriptSettings">
|
4
|
+
<option name="languageLevel" value="ES6" />
|
5
|
+
</component>
|
6
|
+
<component name="ProjectRootManager" version="2" languageLevel="JDK_11" default="false" project-jdk-name="RVM: ruby-2.7.0" project-jdk-type="RUBY_SDK">
|
7
|
+
<output url="file://$PROJECT_DIR$/out" />
|
8
|
+
</component>
|
9
|
+
</project>
|
data/.idea/modules.xml
ADDED
data/.idea/vcs.xml
ADDED
data/.rubocop.yml
ADDED
@@ -0,0 +1,144 @@
|
|
1
|
+
AllCops:
|
2
|
+
# Exclude generated files
|
3
|
+
Exclude:
|
4
|
+
- 'bin/**/*'
|
5
|
+
- 'db/**/*'
|
6
|
+
- 'out/**/*'
|
7
|
+
- 'node_modules/**/*'
|
8
|
+
|
9
|
+
# Added in RuboCop 0.83
|
10
|
+
Layout/EmptyLinesAroundAttributeAccessor:
|
11
|
+
Enabled: true
|
12
|
+
|
13
|
+
# Allow one line around block body (Layout/EmptyLines will still disallow two or more)
|
14
|
+
Layout/EmptyLinesAroundBlockBody:
|
15
|
+
Enabled: false
|
16
|
+
|
17
|
+
# Allow one line around class body (Layout/EmptyLines will still disallow two or more)
|
18
|
+
Layout/EmptyLinesAroundClassBody:
|
19
|
+
Enabled: false
|
20
|
+
|
21
|
+
# Allow one line around module body (Layout/EmptyLines will still disallow two or more)
|
22
|
+
Layout/EmptyLinesAroundModuleBody:
|
23
|
+
Enabled: false
|
24
|
+
|
25
|
+
# Reasonable line-length check; it's too easy for the cure to be worse than the disease
|
26
|
+
Layout/LineLength:
|
27
|
+
Max: 150
|
28
|
+
|
29
|
+
# Make indents consistent regardless of the lengths of variables and method names and whatnot
|
30
|
+
Layout/MultilineMethodCallIndentation:
|
31
|
+
EnforcedStyle: indented
|
32
|
+
|
33
|
+
# Produces monsters
|
34
|
+
Layout/MultilineOperationIndentation:
|
35
|
+
Enabled: false
|
36
|
+
|
37
|
+
# Added in RuboCop 0.84
|
38
|
+
Lint/DeprecatedOpenSSLConstant:
|
39
|
+
Enabled: true
|
40
|
+
|
41
|
+
# Added in RuboCop 0.81
|
42
|
+
Lint/RaiseException:
|
43
|
+
Enabled: true
|
44
|
+
|
45
|
+
# Added in RuboCop 0.85
|
46
|
+
Lint/MixedRegexpCaptureTypes:
|
47
|
+
Enabled: true
|
48
|
+
|
49
|
+
# Added in RuboCop 0.82
|
50
|
+
Layout/SpaceAroundMethodCallOperator:
|
51
|
+
Enabled: true
|
52
|
+
|
53
|
+
# Added in RuboCop 0.81
|
54
|
+
Lint/StructNewOverride:
|
55
|
+
Enabled: true
|
56
|
+
|
57
|
+
# We meant to do that
|
58
|
+
Naming/MemoizedInstanceVariableName:
|
59
|
+
Enabled: False
|
60
|
+
|
61
|
+
# It works in context, trust us
|
62
|
+
Naming/MethodParameterName:
|
63
|
+
Enabled: False
|
64
|
+
|
65
|
+
# Confusing and weird
|
66
|
+
Naming/VariableNumber:
|
67
|
+
Enabled: False
|
68
|
+
|
69
|
+
# Do what's readable in the context you're in
|
70
|
+
Style/AccessModifierDeclarations:
|
71
|
+
Enabled: false
|
72
|
+
|
73
|
+
# 👎 to cultural imperialism
|
74
|
+
Style/AsciiComments:
|
75
|
+
Enabled: false
|
76
|
+
|
77
|
+
# Seriously?
|
78
|
+
Style/CommentedKeyword:
|
79
|
+
Enabled: False
|
80
|
+
|
81
|
+
# Disable problematic module documentation check (see https://github.com/bbatsov/rubocop/issues/947)
|
82
|
+
Style/Documentation:
|
83
|
+
Enabled: false
|
84
|
+
|
85
|
+
# Added in RuboCop 0.82
|
86
|
+
Style/ExponentialNotation:
|
87
|
+
Enabled: false
|
88
|
+
|
89
|
+
# Adding more line noise to format strings will not improve them
|
90
|
+
Style/FormatStringToken:
|
91
|
+
Enabled: false
|
92
|
+
|
93
|
+
# Putting '# frozen_string_literal: true' everywhere does not make the world a better place
|
94
|
+
Style/FrozenStringLiteralComment:
|
95
|
+
Enabled: false
|
96
|
+
|
97
|
+
# Added in RuboCop 0.80
|
98
|
+
Style/HashEachMethods:
|
99
|
+
Enabled: true
|
100
|
+
|
101
|
+
# Added in RuboCop 0.80
|
102
|
+
Style/HashTransformKeys:
|
103
|
+
Enabled: true
|
104
|
+
|
105
|
+
# Added in RuboCop 0.80
|
106
|
+
Style/HashTransformValues:
|
107
|
+
Enabled: true
|
108
|
+
|
109
|
+
# Requiring the lambda() method just makes wordy calls wordier
|
110
|
+
Style/Lambda:
|
111
|
+
EnforcedStyle: literal
|
112
|
+
|
113
|
+
# `foo.positive?` is cute, but it's not actually more readable than `foo > 0`
|
114
|
+
Style/NumericPredicate:
|
115
|
+
Enabled: false
|
116
|
+
|
117
|
+
# Added in RuboCop 0.86
|
118
|
+
Style/RedundantFetchBlock:
|
119
|
+
Enabled: true
|
120
|
+
|
121
|
+
# Added in RuboCop 0.85
|
122
|
+
Style/RedundantRegexpCharacterClass:
|
123
|
+
Enabled: true
|
124
|
+
|
125
|
+
# Added in RuboCop 0.85
|
126
|
+
Style/RedundantRegexpEscape:
|
127
|
+
Enabled: true
|
128
|
+
|
129
|
+
# Don't be unnecessarily redundant
|
130
|
+
Style/ReturnNil:
|
131
|
+
Enabled: true
|
132
|
+
EnforcedStyle: return
|
133
|
+
|
134
|
+
# Unclear why it's a good idea to give parameters semantically meaningless names
|
135
|
+
Style/SingleLineBlockParams:
|
136
|
+
Enabled: false
|
137
|
+
|
138
|
+
# Added in RuboCop 0.83
|
139
|
+
Style/SlicingWithRange:
|
140
|
+
Enabled: true
|
141
|
+
|
142
|
+
# The semantics of `foo&.bar` are a lot less interchangeable with `foo && foo.bar` than RuboCop thinks
|
143
|
+
Style/SafeNavigation:
|
144
|
+
Enabled: false
|