taxonomite 0.1.0

data/spec/models/taxonomite/model_spec.rb

@@ -0,0 +1,39 @@
+require 'spec_helper'
+require 'models/taxonomite/zoology'
+
+module Taxonomite
+    RSpec.describe Tree, type: :model do
+
+        context 'model function' do
+            let!(:node) { build(:taxonomite_node) }
+
+            it 'instantiates a node' do
+                expect(node.class.name).to eq("Taxonomite::Node")
+            end
+
+            it 'destroys a node' do
+                expect { node.destroy }.not_to raise_error
+            end
+
+            it 'sets the name' do
+                node.name = "new_name"
+                expect(node.name).to eq("new_name")
+            end
+
+            it 'sets the description' do
+                node.description = "new_description"
+                expect(node.description).to eq("new_description")
+            end
+
+            it 'allow access to children' do
+                expect { node.children }.not_to raise_error
+            end
+
+            it 'allow access to parent' do
+                expect { node.parent }.not_to raise_error
+            end
+
+        end
+
+    end
+end

data/spec/models/taxonomite/taxonomite_spec.rb

@@ -0,0 +1,11 @@
+require 'spec_helper'
+require 'models/taxonomite/zoology'
+
+module Taxonomite
+    RSpec.describe Node, type: :model do
+
+      # only the most basic here
+
+    end
+
+end

data/spec/models/taxonomite/tree_spec.rb

@@ -0,0 +1,56 @@
+require 'spec_helper'
+require 'models/taxonomite/zoology'
+
+module Taxonomite
+    RSpec.describe Tree, type: :model do
+
+      context 'tree creation' do
+          let!(:nodes) { Array.new(3){ |index| build(:taxonomite_node)} }
+
+          it 'to disallow direct circular reference' do
+              # rephrase to check validity
+              expect { nodes[0].children << nodes[0] }.to raise_error
+          end
+
+          it 'to disallow circular reference (one deep)' do
+               nodes[0].children << nodes[1]
+               expect { nodes[1].children << nodes[0] }.to raise_error
+          end
+      end
+
+      context 'tree structure' do
+        before(:each) do
+          @nodes = Array.new(3) { build(:taxonomite_node) }
+          @nodes[0].children << @nodes[1]
+          @nodes[1].children << @nodes[2]
+        end
+
+          it 'has appropriate children' do
+            expect(@nodes[0].children.size).to eq(1)
+          end
+
+          it 'to disallow circular reference (two deep)' do
+              expect { @nodes[2].children << @nodes[0] }.to raise_error
+          end
+
+          it 'to iterate children' do
+              @nodes[0].children.each do |p|
+                  expect(p).not_to eq(nil)
+              end
+          end
+
+          it 'to allow real access to parent' do
+              expect(@nodes[1].parent).not_to eq(nil)
+              expect { @nodes[1].parent.name }.not_to raise_error
+          end
+
+          it 'ok to destroy a parent object safely' do
+              expect { @nodes[0].destroy }.not_to raise_error
+              expect(@nodes[1].parent).to eq(nil)
+              expect(@nodes[2].parent).not_to eq(nil)
+          end
+
+      end
+
+    end
+end

data/spec/models/taxonomite/zoology.rb

@@ -0,0 +1,119 @@
+
+require 'taxonomite/entity'
+
+module Taxonomite
+  class Kingdom < Taxonomite::Node
+
+    protected
+    def get_entity_type
+        'Kingdom'
+    end
+
+    def valid_parent_types
+      'Taxonomy'
+    end
+
+  end   # class Kingdom
+
+  class Phylum < ::Taxonomite::Node
+
+    protected
+    def get_entity_type
+        return 'Phylum'
+    end
+
+    def valid_parent_types
+      'Kingdom'
+    end
+  end
+
+  class Class < ::Taxonomite::Node
+
+    protected
+    def get_entity_type
+        return 'Class'
+    end
+
+    def valid_parent_types
+      'Phylum'
+    end
+  end
+
+  class Order < ::Taxonomite::Node
+
+    protected
+    def get_entity_type
+        return 'Order'
+    end
+
+    def valid_parent_types
+      'Class'
+    end
+  end
+
+  class Family < ::Taxonomite::Node
+
+    protected
+    def get_entity_type
+        return 'Family'
+    end
+
+    def valid_parent_types
+      'Order'
+    end
+  end
+
+  class Genus < ::Taxonomite::Node
+
+    protected
+    def get_entity_type
+        return 'Genus'
+    end
+
+    def valid_parent_types
+      'Family'
+    end
+  end
+
+  class Species < ::Taxonomite::Node
+
+    def countme
+      return 1
+    end
+
+    protected
+    def get_entity_type
+        return 'Species'
+    end
+
+    def valid_parent_types
+      'Genus'
+    end
+  end
+
+  class BeingRep
+    include Mongoid::Document
+    include Taxonomite::Entity
+
+    field :name, type: String         # name of this particular object
+
+    protected
+    # overload this to create a specific taxonomy node (i.e. species)
+    def create_taxonomy_node
+      Taxonomite::Species.new(name: self.name)
+    end
+  end
+
+  class GenusRep
+    include Mongoid::Document
+    include Taxonomite::Entity
+
+    field :name, type: String   # name of this genus representation
+
+    protected
+      def create_taxonomy_node
+        Taxonomite::Genus.new(name: self.name)
+      end
+  end
+
+end # module Taxonomite

data/spec/rails_helper.rb

@@ -0,0 +1,53 @@
+# This file is copied to spec/ when you run 'rails generate rspec:install'
+ENV['RAILS_ENV'] ||= 'test'
+require File.expand_path('../dummy/config/environment.rb', __FILE__)
+# Prevent database truncation if the environment is production
+abort("The Rails environment is running in production mode!") if Rails.env.production?
+require 'spec_helper'
+require 'rspec/rails'
+
+# Add additional requires below this line. Rails is not loaded until this point!
+
+# Requires supporting ruby files with custom matchers and macros, etc, in
+# spec/support/ and its subdirectories. Files matching `spec/**/*_spec.rb` are
+# run as spec files by default. This means that files in spec/support that end
+# in _spec.rb will both be required and run as specs, causing the specs to be
+# run twice. It is recommended that you do not name files matching this glob to
+# end with _spec.rb. You can configure this pattern with the --pattern
+# option on the command line or in ~/.rspec, .rspec or `.rspec-local`.
+#
+# The following line is provided for convenience purposes. It has the downside
+# of increasing the boot-up time by auto-requiring all files in the support
+# directory. Alternatively, in the individual `*_spec.rb` files, manually
+# require only the support files necessary.
+#
+# Dir[Rails.root.join('spec/support/**/*.rb')].each { |f| require f }
+
+# Checks for pending migrations before tests are run.
+# If you are not using ActiveRecord, you can remove this line.
+# ActiveRecord::Migration.maintain_test_schema!
+
+RSpec.configure do |config|
+  # Remove this line if you're not using ActiveRecord or ActiveRecord fixtures
+  #config.fixture_path = "#{::Rails.root}/spec/fixtures"
+
+  # If you're not using ActiveRecord, or you'd prefer not to run each of your
+  # examples within a transaction, remove the following line or assign false
+  # instead of true.
+  # config.use_transactional_fixtures = true
+
+  # RSpec Rails can automatically mix in different behaviours to your tests
+  # based on their file location, for example enabling you to call `get` and
+  # `post` in specs under `spec/controllers`.
+  #
+  # You can disable this behaviour by removing the line below, and instead
+  # explicitly tag your specs with their type, e.g.:
+  #
+  #     RSpec.describe UsersController, :type => :controller do
+  #       # ...
+  #     end
+  #
+  # The different available types are documented in the features, such as in
+  # https://relishapp.com/rspec/rspec-rails/docs
+
+end

data/spec/spec_helper.rb

@@ -0,0 +1,32 @@
+ENV['RAILS_ENV'] ||= 'test'
+
+require File.expand_path("../../spec/dummy/config/environment", __FILE__)
+require 'rspec/rails'
+require 'factory_girl_rails'
+require 'taxonomite_helper'
+
+Rails.backtrace_cleaner.remove_silencers!
+
+ENGINE_RAILS_ROOT = File.join(File.dirname(__FILE__), '../')
+
+# this will cause factories to load twice!!
+#Dir[File.join(ENGINE_RAILS_ROOT, "spec/factories/**/*.rb")].each {|f| require f}
+
+# load support files
+Dir["#{File.dirname(__FILE__)}/support/**/*.rb"].each { |f| require f }
+
+RSpec.configure do |config|
+    config.mock_with :rspec
+    #config.use_transactional_fixtures = true
+    config.infer_base_class_for_anonymous_controllers = false
+    config.order = "random"
+    config.infer_spec_type_from_file_location!
+
+    config.include FactoryGirl::Syntax::Methods
+    #config.include EngineControllerTestMonkeyPatch, :type => :controller
+    #config.before(:each, :type => :controller) { @routes = Taxonomite::Engine.routes }
+    #config.before(:each, :type => :routing)    { @routes = Taxonomite::Engine.routes }
+    # !! may want to change this later - once specifics about exceptions from Place
+    # !! are sorted out.
+    RSpec::Expectations.configuration.warn_about_potential_false_positives = false
+end

data/spec/taxonomite_helper.rb

@@ -0,0 +1,5 @@
+require 'taxonomite/taxonomite_configuration.rb'
+
+Taxonomite::Node.configure do |config|
+    config.use_tree_model = :self
+end

data/spec/views/taxonomite/taxonomite/index.html.erb_spec.rb

@@ -0,0 +1,5 @@
+require 'rails_helper'
+
+RSpec.describe "taxonomite/index.html.erb", type: :view do
+  #pending "add some examples to (or delete) #{__FILE__}"
+end

data/spec/views/taxonomite/taxonomite/show.html.erb_spec.rb

@@ -0,0 +1,5 @@
+require 'rails_helper'
+
+RSpec.describe "taxonomite/show.html.erb", type: :view do
+  #pending "add some examples to (or delete) #{__FILE__}"
+end

metadata

@@ -0,0 +1,456 @@
+--- !ruby/object:Gem::Specification
+name: taxonomite
+version: !ruby/object:Gem::Version
+  version: 0.1.0
+platform: ruby
+authors:
+- sgillesp
+autorequire: 
+bindir: bin
+cert_chain: []
+date: 2015-08-12 00:00:00.000000000 Z
+dependencies:
+- !ruby/object:Gem::Dependency
+  name: rails
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '4.2'
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '4.2'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '4.2'
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '4.2'
+- !ruby/object:Gem::Dependency
+  name: mongodb
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 0.0.13
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 0.0.13
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: moped
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 2.0.6
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '2.0'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 2.0.6
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '2.0'
+- !ruby/object:Gem::Dependency
+  name: mongoid
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 4.0.2
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '4.0'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 4.0.2
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '4.0'
+- !ruby/object:Gem::Dependency
+  name: bson_ext
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 1.5.0
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '1.0'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 1.5.0
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '1.0'
+- !ruby/object:Gem::Dependency
+  name: rspec-rails
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - '='
+      - !ruby/object:Gem::Version
+        version: 3.3.2
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - '='
+      - !ruby/object:Gem::Version
+        version: 3.3.2
+- !ruby/object:Gem::Dependency
+  name: factory_girl_rails
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: bundler
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: rake
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: faker
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: better_errors
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: binding_of_caller
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+description: Manages objects classified within a taxonomy and enforces a hierarchical
+  tree structure. Works only with MongoDB currently - may try to abstract the database
+  layer with later versions.
+email:
+- masterofratios@gmail.com
+executables: []
+extensions: []
+extra_rdoc_files: []
+files:
+- Rakefile
+- lib/taxonomite.rb
+- lib/taxonomite/entity.rb
+- lib/taxonomite/exceptions.rb
+- lib/taxonomite/node.rb
+- lib/taxonomite/taxonomite_configuration.rb
+- lib/taxonomite/tree.rb
+- lib/taxonomite/version.rb
+- spec/controllers/taxonomite/taxonomite_controller_spec.rb
+- spec/dummy/README.rdoc
+- spec/dummy/Rakefile
+- spec/dummy/app/assets/javascripts/application.js
+- spec/dummy/app/assets/stylesheets/application.css
+- spec/dummy/app/assets/stylesheets/scaffold.css
+- spec/dummy/app/controllers/application_controller.rb
+- spec/dummy/app/controllers/taxonomite_controller.rb
+- spec/dummy/app/helpers/application_helper.rb
+- spec/dummy/app/helpers/taxonomite_helper.rb
+- spec/dummy/app/views/layouts/application.html.erb
+- spec/dummy/app/views/shared/_error_messages.html.erb
+- spec/dummy/app/views/shared/_flash_messages.html.erb
+- spec/dummy/app/views/taxonomite/_node.html.erb
+- spec/dummy/app/views/taxonomite/edit.html.erb
+- spec/dummy/app/views/taxonomite/index.html.erb
+- spec/dummy/app/views/taxonomite/new.html.erb
+- spec/dummy/app/views/taxonomite/show.html.erb
+- spec/dummy/bin/bundle
+- spec/dummy/bin/rails
+- spec/dummy/bin/rake
+- spec/dummy/bin/setup
+- spec/dummy/config.ru
+- spec/dummy/config/application.rb
+- spec/dummy/config/boot.rb
+- spec/dummy/config/environment.rb
+- spec/dummy/config/environments/development.rb
+- spec/dummy/config/environments/production.rb
+- spec/dummy/config/environments/test.rb
+- spec/dummy/config/initializers/assets.rb
+- spec/dummy/config/initializers/backtrace_silencers.rb
+- spec/dummy/config/initializers/cookies_serializer.rb
+- spec/dummy/config/initializers/filter_parameter_logging.rb
+- spec/dummy/config/initializers/inflections.rb
+- spec/dummy/config/initializers/mime_types.rb
+- spec/dummy/config/initializers/mongoid.rb
+- spec/dummy/config/initializers/session_store.rb
+- spec/dummy/config/initializers/wrap_parameters.rb
+- spec/dummy/config/locales/en.yml
+- spec/dummy/config/mongoid.yml
+- spec/dummy/config/routes.rb
+- spec/dummy/config/secrets.yml
+- spec/dummy/lib/tasks/db_populate.rake
+- spec/dummy/lib/util.rb
+- spec/dummy/log/development.log
+- spec/dummy/log/test.log
+- spec/dummy/public/404.html
+- spec/dummy/public/422.html
+- spec/dummy/public/500.html
+- spec/dummy/public/favicon.ico
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+- spec/factories/entity.rb
+- spec/factories/taxonomy_taxon.rb
+- spec/models/taxonomite/entity_spec.rb
+- spec/models/taxonomite/hierarchy_spec.rb
+- spec/models/taxonomite/model_spec.rb
+- spec/models/taxonomite/taxonomite_spec.rb
+- spec/models/taxonomite/tree_spec.rb
+- spec/models/taxonomite/zoology.rb
+- spec/rails_helper.rb
+- spec/spec_helper.rb
+- spec/taxonomite_helper.rb
+- spec/views/taxonomite/taxonomite/index.html.erb_spec.rb
+- spec/views/taxonomite/taxonomite/show.html.erb_spec.rb
+homepage: http://github.com/sgillesp/places
+licenses:
+- MIT
+metadata: {}
+post_install_message: 
+rdoc_options: []
+require_paths:
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '0'
+required_rubygems_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '0'
+requirements: []
+rubyforge_project: 
+rubygems_version: 2.4.8
+signing_key: 
+specification_version: 4
+summary: Manages objects classified within a taxonomy and enforces a hierarchical
+  tree structure. Persently works only with MongoDB.
+test_files:
+- spec/models/taxonomite/model_spec.rb
+- spec/models/taxonomite/zoology.rb
+- spec/models/taxonomite/hierarchy_spec.rb
+- spec/models/taxonomite/taxonomite_spec.rb
+- spec/models/taxonomite/entity_spec.rb
+- spec/models/taxonomite/tree_spec.rb
+- spec/controllers/taxonomite/taxonomite_controller_spec.rb
+- spec/factories/taxonomy_taxon.rb
+- spec/factories/entity.rb
+- spec/views/taxonomite/taxonomite/index.html.erb_spec.rb
+- spec/views/taxonomite/taxonomite/show.html.erb_spec.rb
+- spec/dummy/README.rdoc
+- spec/dummy/lib/tasks/db_populate.rake
+- spec/dummy/lib/util.rb
+- spec/dummy/config.ru
+- spec/dummy/Rakefile
+- spec/dummy/bin/rake
+- spec/dummy/bin/rails
+- spec/dummy/bin/bundle
+- spec/dummy/bin/setup
+- spec/dummy/config/locales/en.yml
+- spec/dummy/config/mongoid.yml
+- spec/dummy/config/secrets.yml
+- spec/dummy/config/initializers/mongoid.rb
+- spec/dummy/config/initializers/assets.rb
+- spec/dummy/config/initializers/cookies_serializer.rb
+- spec/dummy/config/initializers/backtrace_silencers.rb
+- spec/dummy/config/initializers/session_store.rb
+- spec/dummy/config/initializers/mime_types.rb
+- spec/dummy/config/initializers/inflections.rb
+- spec/dummy/config/initializers/filter_parameter_logging.rb
+- spec/dummy/config/initializers/wrap_parameters.rb
+- spec/dummy/config/boot.rb
+- spec/dummy/config/environment.rb
+- spec/dummy/config/routes.rb
+- spec/dummy/config/application.rb
+- spec/dummy/config/environments/test.rb
+- spec/dummy/config/environments/production.rb
+- spec/dummy/config/environments/development.rb
+- spec/dummy/app/helpers/application_helper.rb
+- spec/dummy/app/helpers/taxonomite_helper.rb
+- spec/dummy/app/controllers/taxonomite_controller.rb
+- spec/dummy/app/controllers/application_controller.rb
+- spec/dummy/app/views/taxonomite/show.html.erb
+- spec/dummy/app/views/taxonomite/edit.html.erb
+- spec/dummy/app/views/taxonomite/index.html.erb
+- spec/dummy/app/views/taxonomite/new.html.erb
+- spec/dummy/app/views/taxonomite/_node.html.erb
+- spec/dummy/app/views/layouts/application.html.erb
+- spec/dummy/app/views/shared/_flash_messages.html.erb
+- spec/dummy/app/views/shared/_error_messages.html.erb
+- spec/dummy/app/assets/stylesheets/scaffold.css
+- spec/dummy/app/assets/stylesheets/application.css
+- spec/dummy/app/assets/javascripts/application.js
+- spec/dummy/public/422.html
+- spec/dummy/public/favicon.ico
+- spec/dummy/public/404.html
+- spec/dummy/public/500.html
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+- spec/dummy/log/development.log
+- spec/taxonomite_helper.rb
+- spec/spec_helper.rb
+- spec/rails_helper.rb
+has_rdoc: