taxonifi 0.3.3 → 0.3.4

checksums.yaml

@@ -1,7 +1,7 @@
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+  metadata.gz: 8a47e76270c05d20bb7414449757319b5af4a3c6
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data/Gemfile.lock

@@ -1,8 +1,8 @@
 PATH
   remote: .
   specs:
-    taxonifi (0.3.3)
-      byebug (~> 4.0)
+    taxonifi (0.3.4)
+      byebug (~> 5.0)
       rake (~> 10.4)
       require_all (~> 1.3)
 
@@ -11,7 +11,7 @@ GEM
   specs:
     awesome_print (1.6.1)
     builder (3.2.2)
-    byebug (4.0.5)
+    byebug (5.0.0)
       columnize (= 0.9.0)
     columnize (0.9.0)
     did_you_mean (0.9.8)

data/README.md

@@ -184,8 +184,9 @@ Copyright (c) 2012 Illinois Natural History Survey. See LICENSE.txt for
 further details.
 
 
+
 [1]: https://secure.travis-ci.org/SpeciesFileGroup/taxonifi.png?branch=master
-[2]: http://travis-ci.org/SpeciesFileGroup/taxonifi?branch=master
+[2]: https://travis-ci.org/SpeciesFileGroup/taxonifi.svg?branch=master
 [7]: https://gemnasium.com/SpeciesFileGroup/taxonifi.png?branch=master
 [8]: https://gemnasium.com/SpeciesFileGroup/taxonifi?branch=master
 

data/lib/taxonifi/assessor/row_assessor.rb

@@ -8,7 +8,7 @@ module Taxonifi
     # !! that have particular attributes
     module RowAssessor
 
-      class RowAssessorError < StandardError; end
+      class RowAssessorError < TaxonifiError; end
 
       # Pass a CSV (require "csv") row as read with the following 
       # parameters: 

data/lib/taxonifi/assessor.rb

@@ -2,7 +2,7 @@ module Taxonifi
 
   Dir[File.join(__dir__, 'assessor', '*.rb')].each {|file| require file }
 
-  class AssessorError < StandardError; end
+  class AssessorError < TaxonifiError; end
 
   # The assessor assesses!
   # 

data/lib/taxonifi/base.rb

@@ -1,5 +1,5 @@
 module Taxonifi
-  class ModelError < StandardError; end
+  class ModelError < TaxonifiError; end
   module Model
   end
 end

data/lib/taxonifi/export.rb

@@ -1,7 +1,7 @@
 module Taxonifi
   # Export related functionality.
   module Export
-    class ExportError < StandardError; end 
+    class ExportError < TaxonifiError; end 
     Dir.glob( File.expand_path(File.join(File.dirname(__FILE__), "format/*.rb") )) do |file|
       require file
     end

data/lib/taxonifi/lumper.rb

@@ -7,7 +7,7 @@ module Taxonifi::Lumper
   module Lumps
   end
 
-  class LumperError < StandardError; end
+  class LumperError < Taxonifi::TaxonifiError; end
 
   # Columns used for species epithets.
   # !! Todo: map DwC URIs to these labels (at present they largely correllate with Tokens,

data/lib/taxonifi/model/collection.rb

@@ -1,5 +1,5 @@
 module Taxonifi
-  class CollectionError < StandardError; end
+  class CollectionError < TaxonifiError; end
   module Model
 
     require File.expand_path(File.join(File.dirname(__FILE__), 'shared_class_methods'))

data/lib/taxonifi/model/generic_object.rb

@@ -1,5 +1,5 @@
 module Taxonifi
-  class ModelError < StandardError; end
+  class ModelError < TaxonifiError; end
   module Model
 
     # A generic object, has name, parent, rank properties. 

data/lib/taxonifi/model/geog.rb

@@ -1,5 +1,5 @@
 module Taxonifi
-  class GeogError < StandardError; end
+  class GeogError < TaxonifiError; end
   module Model
 
     # An instance of some geopolitical unit.

data/lib/taxonifi/model/geog_collection.rb

@@ -1,5 +1,5 @@
 module Taxonifi
-  class GeogCollectionError < StandardError; end
+  class GeogCollectionError < TaxonifiError; end
   module Model
 
     # Collection of geog objects.

data/lib/taxonifi/model/name.rb

@@ -1,5 +1,5 @@
 module Taxonifi
-  class NameError < StandardError; end
+  class NameError < TaxonifiError; end
 
   # A taxonomic name.
   class Model::Name < Taxonifi::Model::Base

data/lib/taxonifi/model/name_collection.rb

@@ -2,7 +2,7 @@
 require File.expand_path(File.join(File.dirname(__FILE__), 'collection'))
 
 module Taxonifi
-  class NameCollectionError < StandardError; end
+  class NameCollectionError < TaxonifiError; end
   module Model
 
     # A collection of taxonomic names. 

data/lib/taxonifi/model/ref.rb

@@ -1,5 +1,5 @@
 module Taxonifi
-  class RefError < StandardError; end
+  class RefError < TaxonifiError; end
   module Model
 
     # A basic reference object.  

data/lib/taxonifi/model/ref_collection.rb

@@ -1,5 +1,5 @@
 module Taxonifi
-  class RefCollectionError < StandardError; end
+  class RefCollectionError < TaxonifiError; end
 
   module Model
 

data/lib/taxonifi/model/species_name.rb

@@ -1,5 +1,5 @@
 module Taxonifi
-  class SpeciesNameError < StandardError; end
+  class SpeciesNameError < TaxonifiError; end
   module Model
 
     # The species name model is just a pointer to 5 Taxonifi::Model::Names. 

data/lib/taxonifi/splitter.rb

@@ -12,7 +12,7 @@ module Taxonifi
       :species_name
     ]
 
-    class SplitterError < StandardError; end
+    class SplitterError < TaxonifiError; end
 
     # stub, we might not need
     class Splitter

data/lib/taxonifi/version.rb

@@ -1,3 +1,3 @@
 module Taxonifi 
-  VERSION = "0.3.3"
+  VERSION = "0.3.4"
 end

data/lib/taxonifi.rb

@@ -5,6 +5,8 @@ require 'require_all'
 # Everything in Taxonifi is in here.
 module Taxonifi
 
+  class TaxonifiError < StandardError; end;
+
   # Taxonomic ranks. 
   RANKS = %w{
       kingdom

data/taxonifi.gemspec

@@ -28,7 +28,7 @@ Gem::Specification.new do |s|
   s.rubygems_version = "2.4.5"
 
   s.add_dependency "rake", '~> 10.4'
-  s.add_dependency "byebug", "~> 4.0"
+  s.add_dependency "byebug", "~> 5.0"
   s.add_dependency "require_all", "~> 1.3"
 
   s.add_development_dependency "bundler", "~> 1.9"

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: taxonifi
 version: !ruby/object:Gem::Version
-  version: 0.3.3
+  version: 0.3.4
 platform: ruby
 authors:
 - mjy
@@ -30,14 +30,14 @@ dependencies:
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: '4.0'
+        version: '5.0'
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: '4.0'
+        version: '5.0'
 - !ruby/object:Gem::Dependency
   name: require_all
   requirement: !ruby/object:Gem::Requirement
@@ -252,4 +252,3 @@ test_files:
 - test/test_taxonifi_ref.rb
 - test/test_taxonifi_ref_collection.rb
 - test/test_taxonifi_species_name.rb
-has_rdoc: