taxonifi 0.1.0
Sign up to get free protection for your applications and to get access to all the features.
- data/.document +5 -0
- data/Gemfile +18 -0
- data/Gemfile.lock +30 -0
- data/LICENSE.txt +20 -0
- data/README.rdoc +155 -0
- data/Rakefile +53 -0
- data/VERSION +1 -0
- data/lib/assessor/assessor.rb +31 -0
- data/lib/assessor/base.rb +17 -0
- data/lib/assessor/row_assessor.rb +131 -0
- data/lib/export/export.rb +9 -0
- data/lib/export/format/base.rb +43 -0
- data/lib/export/format/species_file.rb +341 -0
- data/lib/lumper/lumper.rb +334 -0
- data/lib/lumper/lumps/parent_child_name_collection.rb +84 -0
- data/lib/models/author_year.rb +39 -0
- data/lib/models/base.rb +73 -0
- data/lib/models/collection.rb +92 -0
- data/lib/models/generic_object.rb +15 -0
- data/lib/models/geog.rb +59 -0
- data/lib/models/geog_collection.rb +28 -0
- data/lib/models/name.rb +206 -0
- data/lib/models/name_collection.rb +149 -0
- data/lib/models/person.rb +49 -0
- data/lib/models/ref.rb +85 -0
- data/lib/models/ref_collection.rb +106 -0
- data/lib/models/species_name.rb +85 -0
- data/lib/splitter/builder.rb +26 -0
- data/lib/splitter/lexer.rb +70 -0
- data/lib/splitter/parser.rb +54 -0
- data/lib/splitter/splitter.rb +45 -0
- data/lib/splitter/tokens.rb +322 -0
- data/lib/taxonifi.rb +36 -0
- data/test/file_fixtures/Lygaeoidea.csv +801 -0
- data/test/helper.rb +38 -0
- data/test/test_exporter.rb +32 -0
- data/test/test_lumper_geogs.rb +59 -0
- data/test/test_lumper_hierarchical_collection.rb +88 -0
- data/test/test_lumper_names.rb +119 -0
- data/test/test_lumper_parent_child_name_collection.rb +41 -0
- data/test/test_lumper_refs.rb +91 -0
- data/test/test_parser.rb +34 -0
- data/test/test_splitter.rb +27 -0
- data/test/test_splitter_tokens.rb +403 -0
- data/test/test_taxonifi.rb +11 -0
- data/test/test_taxonifi_accessor.rb +61 -0
- data/test/test_taxonifi_geog.rb +51 -0
- data/test/test_taxonifi_name.rb +186 -0
- data/test/test_taxonifi_name_collection.rb +158 -0
- data/test/test_taxonifi_ref.rb +90 -0
- data/test/test_taxonifi_ref_collection.rb +69 -0
- data/test/test_taxonifi_species_name.rb +95 -0
- metadata +167 -0
metadata
ADDED
@@ -0,0 +1,167 @@
|
|
1
|
+
--- !ruby/object:Gem::Specification
|
2
|
+
name: taxonifi
|
3
|
+
version: !ruby/object:Gem::Version
|
4
|
+
version: 0.1.0
|
5
|
+
prerelease:
|
6
|
+
platform: ruby
|
7
|
+
authors:
|
8
|
+
- mjy
|
9
|
+
autorequire:
|
10
|
+
bindir: bin
|
11
|
+
cert_chain: []
|
12
|
+
date: 2012-06-07 00:00:00.000000000 Z
|
13
|
+
dependencies:
|
14
|
+
- !ruby/object:Gem::Dependency
|
15
|
+
name: rdoc
|
16
|
+
requirement: !ruby/object:Gem::Requirement
|
17
|
+
none: false
|
18
|
+
requirements:
|
19
|
+
- - ~>
|
20
|
+
- !ruby/object:Gem::Version
|
21
|
+
version: '3.12'
|
22
|
+
type: :development
|
23
|
+
prerelease: false
|
24
|
+
version_requirements: !ruby/object:Gem::Requirement
|
25
|
+
none: false
|
26
|
+
requirements:
|
27
|
+
- - ~>
|
28
|
+
- !ruby/object:Gem::Version
|
29
|
+
version: '3.12'
|
30
|
+
- !ruby/object:Gem::Dependency
|
31
|
+
name: bundler
|
32
|
+
requirement: !ruby/object:Gem::Requirement
|
33
|
+
none: false
|
34
|
+
requirements:
|
35
|
+
- - ! '>'
|
36
|
+
- !ruby/object:Gem::Version
|
37
|
+
version: 1.0.0
|
38
|
+
type: :development
|
39
|
+
prerelease: false
|
40
|
+
version_requirements: !ruby/object:Gem::Requirement
|
41
|
+
none: false
|
42
|
+
requirements:
|
43
|
+
- - ! '>'
|
44
|
+
- !ruby/object:Gem::Version
|
45
|
+
version: 1.0.0
|
46
|
+
- !ruby/object:Gem::Dependency
|
47
|
+
name: jeweler
|
48
|
+
requirement: !ruby/object:Gem::Requirement
|
49
|
+
none: false
|
50
|
+
requirements:
|
51
|
+
- - ~>
|
52
|
+
- !ruby/object:Gem::Version
|
53
|
+
version: 1.8.3
|
54
|
+
type: :development
|
55
|
+
prerelease: false
|
56
|
+
version_requirements: !ruby/object:Gem::Requirement
|
57
|
+
none: false
|
58
|
+
requirements:
|
59
|
+
- - ~>
|
60
|
+
- !ruby/object:Gem::Version
|
61
|
+
version: 1.8.3
|
62
|
+
- !ruby/object:Gem::Dependency
|
63
|
+
name: debugger
|
64
|
+
requirement: !ruby/object:Gem::Requirement
|
65
|
+
none: false
|
66
|
+
requirements:
|
67
|
+
- - ! '>='
|
68
|
+
- !ruby/object:Gem::Version
|
69
|
+
version: '0'
|
70
|
+
type: :development
|
71
|
+
prerelease: false
|
72
|
+
version_requirements: !ruby/object:Gem::Requirement
|
73
|
+
none: false
|
74
|
+
requirements:
|
75
|
+
- - ! '>='
|
76
|
+
- !ruby/object:Gem::Version
|
77
|
+
version: '0'
|
78
|
+
description: Taxonifi contains simple models and utilties of use in for parsing lists
|
79
|
+
of taxonomic name (life) related metadata
|
80
|
+
email: diapriid@gmail.com
|
81
|
+
executables: []
|
82
|
+
extensions: []
|
83
|
+
extra_rdoc_files:
|
84
|
+
- LICENSE.txt
|
85
|
+
- README.rdoc
|
86
|
+
files:
|
87
|
+
- .document
|
88
|
+
- Gemfile
|
89
|
+
- Gemfile.lock
|
90
|
+
- LICENSE.txt
|
91
|
+
- README.rdoc
|
92
|
+
- Rakefile
|
93
|
+
- VERSION
|
94
|
+
- lib/assessor/assessor.rb
|
95
|
+
- lib/assessor/base.rb
|
96
|
+
- lib/assessor/row_assessor.rb
|
97
|
+
- lib/export/export.rb
|
98
|
+
- lib/export/format/base.rb
|
99
|
+
- lib/export/format/species_file.rb
|
100
|
+
- lib/lumper/lumper.rb
|
101
|
+
- lib/lumper/lumps/parent_child_name_collection.rb
|
102
|
+
- lib/models/author_year.rb
|
103
|
+
- lib/models/base.rb
|
104
|
+
- lib/models/collection.rb
|
105
|
+
- lib/models/generic_object.rb
|
106
|
+
- lib/models/geog.rb
|
107
|
+
- lib/models/geog_collection.rb
|
108
|
+
- lib/models/name.rb
|
109
|
+
- lib/models/name_collection.rb
|
110
|
+
- lib/models/person.rb
|
111
|
+
- lib/models/ref.rb
|
112
|
+
- lib/models/ref_collection.rb
|
113
|
+
- lib/models/species_name.rb
|
114
|
+
- lib/splitter/builder.rb
|
115
|
+
- lib/splitter/lexer.rb
|
116
|
+
- lib/splitter/parser.rb
|
117
|
+
- lib/splitter/splitter.rb
|
118
|
+
- lib/splitter/tokens.rb
|
119
|
+
- lib/taxonifi.rb
|
120
|
+
- test/file_fixtures/Lygaeoidea.csv
|
121
|
+
- test/helper.rb
|
122
|
+
- test/test_exporter.rb
|
123
|
+
- test/test_lumper_geogs.rb
|
124
|
+
- test/test_lumper_hierarchical_collection.rb
|
125
|
+
- test/test_lumper_names.rb
|
126
|
+
- test/test_lumper_parent_child_name_collection.rb
|
127
|
+
- test/test_lumper_refs.rb
|
128
|
+
- test/test_parser.rb
|
129
|
+
- test/test_splitter.rb
|
130
|
+
- test/test_splitter_tokens.rb
|
131
|
+
- test/test_taxonifi.rb
|
132
|
+
- test/test_taxonifi_accessor.rb
|
133
|
+
- test/test_taxonifi_geog.rb
|
134
|
+
- test/test_taxonifi_name.rb
|
135
|
+
- test/test_taxonifi_name_collection.rb
|
136
|
+
- test/test_taxonifi_ref.rb
|
137
|
+
- test/test_taxonifi_ref_collection.rb
|
138
|
+
- test/test_taxonifi_species_name.rb
|
139
|
+
homepage: http://github.com/mjy/taxonifi
|
140
|
+
licenses:
|
141
|
+
- MIT
|
142
|
+
post_install_message:
|
143
|
+
rdoc_options: []
|
144
|
+
require_paths:
|
145
|
+
- lib
|
146
|
+
required_ruby_version: !ruby/object:Gem::Requirement
|
147
|
+
none: false
|
148
|
+
requirements:
|
149
|
+
- - ! '>='
|
150
|
+
- !ruby/object:Gem::Version
|
151
|
+
version: '0'
|
152
|
+
segments:
|
153
|
+
- 0
|
154
|
+
hash: 3742775100880240863
|
155
|
+
required_rubygems_version: !ruby/object:Gem::Requirement
|
156
|
+
none: false
|
157
|
+
requirements:
|
158
|
+
- - ! '>='
|
159
|
+
- !ruby/object:Gem::Version
|
160
|
+
version: '0'
|
161
|
+
requirements: []
|
162
|
+
rubyforge_project:
|
163
|
+
rubygems_version: 1.8.21
|
164
|
+
signing_key:
|
165
|
+
specification_version: 3
|
166
|
+
summary: A general purpose framework for scripted handling of taxonomic names
|
167
|
+
test_files: []
|