taxonifi 0.1.0

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Files changed (53) hide show
  1. data/.document +5 -0
  2. data/Gemfile +18 -0
  3. data/Gemfile.lock +30 -0
  4. data/LICENSE.txt +20 -0
  5. data/README.rdoc +155 -0
  6. data/Rakefile +53 -0
  7. data/VERSION +1 -0
  8. data/lib/assessor/assessor.rb +31 -0
  9. data/lib/assessor/base.rb +17 -0
  10. data/lib/assessor/row_assessor.rb +131 -0
  11. data/lib/export/export.rb +9 -0
  12. data/lib/export/format/base.rb +43 -0
  13. data/lib/export/format/species_file.rb +341 -0
  14. data/lib/lumper/lumper.rb +334 -0
  15. data/lib/lumper/lumps/parent_child_name_collection.rb +84 -0
  16. data/lib/models/author_year.rb +39 -0
  17. data/lib/models/base.rb +73 -0
  18. data/lib/models/collection.rb +92 -0
  19. data/lib/models/generic_object.rb +15 -0
  20. data/lib/models/geog.rb +59 -0
  21. data/lib/models/geog_collection.rb +28 -0
  22. data/lib/models/name.rb +206 -0
  23. data/lib/models/name_collection.rb +149 -0
  24. data/lib/models/person.rb +49 -0
  25. data/lib/models/ref.rb +85 -0
  26. data/lib/models/ref_collection.rb +106 -0
  27. data/lib/models/species_name.rb +85 -0
  28. data/lib/splitter/builder.rb +26 -0
  29. data/lib/splitter/lexer.rb +70 -0
  30. data/lib/splitter/parser.rb +54 -0
  31. data/lib/splitter/splitter.rb +45 -0
  32. data/lib/splitter/tokens.rb +322 -0
  33. data/lib/taxonifi.rb +36 -0
  34. data/test/file_fixtures/Lygaeoidea.csv +801 -0
  35. data/test/helper.rb +38 -0
  36. data/test/test_exporter.rb +32 -0
  37. data/test/test_lumper_geogs.rb +59 -0
  38. data/test/test_lumper_hierarchical_collection.rb +88 -0
  39. data/test/test_lumper_names.rb +119 -0
  40. data/test/test_lumper_parent_child_name_collection.rb +41 -0
  41. data/test/test_lumper_refs.rb +91 -0
  42. data/test/test_parser.rb +34 -0
  43. data/test/test_splitter.rb +27 -0
  44. data/test/test_splitter_tokens.rb +403 -0
  45. data/test/test_taxonifi.rb +11 -0
  46. data/test/test_taxonifi_accessor.rb +61 -0
  47. data/test/test_taxonifi_geog.rb +51 -0
  48. data/test/test_taxonifi_name.rb +186 -0
  49. data/test/test_taxonifi_name_collection.rb +158 -0
  50. data/test/test_taxonifi_ref.rb +90 -0
  51. data/test/test_taxonifi_ref_collection.rb +69 -0
  52. data/test/test_taxonifi_species_name.rb +95 -0
  53. metadata +167 -0
metadata ADDED
@@ -0,0 +1,167 @@
1
+ --- !ruby/object:Gem::Specification
2
+ name: taxonifi
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+ version: !ruby/object:Gem::Version
4
+ version: 0.1.0
5
+ prerelease:
6
+ platform: ruby
7
+ authors:
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+ - mjy
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+ autorequire:
10
+ bindir: bin
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+ cert_chain: []
12
+ date: 2012-06-07 00:00:00.000000000 Z
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+ dependencies:
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+ - !ruby/object:Gem::Dependency
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+ name: rdoc
16
+ requirement: !ruby/object:Gem::Requirement
17
+ none: false
18
+ requirements:
19
+ - - ~>
20
+ - !ruby/object:Gem::Version
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+ version: '3.12'
22
+ type: :development
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+ prerelease: false
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+ version_requirements: !ruby/object:Gem::Requirement
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+ none: false
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+ requirements:
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+ - - ~>
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+ - !ruby/object:Gem::Version
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+ version: '3.12'
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+ - !ruby/object:Gem::Dependency
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+ name: bundler
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+ requirement: !ruby/object:Gem::Requirement
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+ none: false
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+ requirements:
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+ - - ! '>'
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+ - !ruby/object:Gem::Version
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+ version: 1.0.0
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+ type: :development
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+ prerelease: false
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+ version_requirements: !ruby/object:Gem::Requirement
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+ none: false
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+ requirements:
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+ - - ! '>'
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+ - !ruby/object:Gem::Version
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+ version: 1.0.0
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+ - !ruby/object:Gem::Dependency
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+ name: jeweler
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+ requirement: !ruby/object:Gem::Requirement
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+ none: false
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+ requirements:
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+ - - ~>
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+ - !ruby/object:Gem::Version
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+ version: 1.8.3
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+ type: :development
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+ prerelease: false
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+ version_requirements: !ruby/object:Gem::Requirement
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+ none: false
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+ requirements:
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+ - - ~>
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+ - !ruby/object:Gem::Version
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+ version: 1.8.3
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+ - !ruby/object:Gem::Dependency
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+ name: debugger
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+ requirement: !ruby/object:Gem::Requirement
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+ none: false
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+ requirements:
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+ - - ! '>='
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+ - !ruby/object:Gem::Version
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+ version: '0'
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+ type: :development
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+ prerelease: false
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+ version_requirements: !ruby/object:Gem::Requirement
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+ none: false
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+ requirements:
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+ - - ! '>='
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+ - !ruby/object:Gem::Version
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+ version: '0'
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+ description: Taxonifi contains simple models and utilties of use in for parsing lists
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+ of taxonomic name (life) related metadata
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+ email: diapriid@gmail.com
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+ executables: []
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+ extensions: []
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+ extra_rdoc_files:
84
+ - LICENSE.txt
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+ - README.rdoc
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+ files:
87
+ - .document
88
+ - Gemfile
89
+ - Gemfile.lock
90
+ - LICENSE.txt
91
+ - README.rdoc
92
+ - Rakefile
93
+ - VERSION
94
+ - lib/assessor/assessor.rb
95
+ - lib/assessor/base.rb
96
+ - lib/assessor/row_assessor.rb
97
+ - lib/export/export.rb
98
+ - lib/export/format/base.rb
99
+ - lib/export/format/species_file.rb
100
+ - lib/lumper/lumper.rb
101
+ - lib/lumper/lumps/parent_child_name_collection.rb
102
+ - lib/models/author_year.rb
103
+ - lib/models/base.rb
104
+ - lib/models/collection.rb
105
+ - lib/models/generic_object.rb
106
+ - lib/models/geog.rb
107
+ - lib/models/geog_collection.rb
108
+ - lib/models/name.rb
109
+ - lib/models/name_collection.rb
110
+ - lib/models/person.rb
111
+ - lib/models/ref.rb
112
+ - lib/models/ref_collection.rb
113
+ - lib/models/species_name.rb
114
+ - lib/splitter/builder.rb
115
+ - lib/splitter/lexer.rb
116
+ - lib/splitter/parser.rb
117
+ - lib/splitter/splitter.rb
118
+ - lib/splitter/tokens.rb
119
+ - lib/taxonifi.rb
120
+ - test/file_fixtures/Lygaeoidea.csv
121
+ - test/helper.rb
122
+ - test/test_exporter.rb
123
+ - test/test_lumper_geogs.rb
124
+ - test/test_lumper_hierarchical_collection.rb
125
+ - test/test_lumper_names.rb
126
+ - test/test_lumper_parent_child_name_collection.rb
127
+ - test/test_lumper_refs.rb
128
+ - test/test_parser.rb
129
+ - test/test_splitter.rb
130
+ - test/test_splitter_tokens.rb
131
+ - test/test_taxonifi.rb
132
+ - test/test_taxonifi_accessor.rb
133
+ - test/test_taxonifi_geog.rb
134
+ - test/test_taxonifi_name.rb
135
+ - test/test_taxonifi_name_collection.rb
136
+ - test/test_taxonifi_ref.rb
137
+ - test/test_taxonifi_ref_collection.rb
138
+ - test/test_taxonifi_species_name.rb
139
+ homepage: http://github.com/mjy/taxonifi
140
+ licenses:
141
+ - MIT
142
+ post_install_message:
143
+ rdoc_options: []
144
+ require_paths:
145
+ - lib
146
+ required_ruby_version: !ruby/object:Gem::Requirement
147
+ none: false
148
+ requirements:
149
+ - - ! '>='
150
+ - !ruby/object:Gem::Version
151
+ version: '0'
152
+ segments:
153
+ - 0
154
+ hash: 3742775100880240863
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+ required_rubygems_version: !ruby/object:Gem::Requirement
156
+ none: false
157
+ requirements:
158
+ - - ! '>='
159
+ - !ruby/object:Gem::Version
160
+ version: '0'
161
+ requirements: []
162
+ rubyforge_project:
163
+ rubygems_version: 1.8.21
164
+ signing_key:
165
+ specification_version: 3
166
+ summary: A general purpose framework for scripted handling of taxonomic names
167
+ test_files: []