taverna-player 0.5.0 → 0.6.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- data/.gitignore +1 -0
- data/.travis.yml +8 -0
- data/CHANGES.rdoc +47 -0
- data/README.rdoc +43 -3
- data/Rakefile +1 -4
- data/app/assets/stylesheets/taverna_player/coderay.css +30 -20
- data/app/controllers/taverna_player/application_controller.rb +2 -2
- data/app/controllers/taverna_player/job_queue_controller.rb +18 -0
- data/app/models/taverna_player/run.rb +10 -3
- data/app/views/taverna_player/job_queue/index.html.erb +47 -0
- data/app/views/taverna_player/runs/_interaction.html.erb +7 -1
- data/app/views/taverna_player/runs/embedded/new.html.erb +1 -1
- data/config/locales/en.yml +36 -0
- data/config/routes.rb +4 -1
- data/db/migrate/20140226135723_change_taverna_player_runs_status_message_to_use_keys.rb +19 -0
- data/lib/generators/taverna_player/install_generator.rb +6 -1
- data/lib/generators/templates/ReadMe.txt +6 -0
- data/lib/generators/templates/controllers/job_queue_controller.rb +19 -0
- data/lib/generators/templates/player_initializer.rb +8 -0
- data/lib/tasks/delete-cancelled-runs.rake +1 -1
- data/lib/taverna-player.rb +9 -1
- data/lib/taverna_player/concerns/controllers/job_queue_controller.rb +38 -0
- data/lib/taverna_player/concerns/controllers/runs_controller.rb +2 -13
- data/lib/taverna_player/concerns/models/run.rb +22 -9
- data/lib/taverna_player/concerns/models/run_port.rb +5 -0
- data/lib/taverna_player/port_renderer.rb +1 -1
- data/lib/taverna_player/version.rb +1 -1
- data/lib/taverna_player/worker.rb +78 -51
- data/taverna_player.gemspec +7 -5
- data/test/dummy/app/views/home/index.html.erb +1 -1
- data/test/dummy/app/views/layouts/application.html.erb +2 -1
- data/test/dummy/config/application.rb +1 -0
- data/test/dummy/config/initializers/taverna_player.rb +8 -3
- data/test/dummy/config/locales/taverna_player.en.yml +36 -0
- data/test/dummy/db/migrate/20140226143013_change_taverna_player_runs_status_message_to_use_keys.taverna_player.rb +20 -0
- data/test/dummy/db/schema.rb +9 -9
- data/test/dummy/lib/callbacks.rb +1 -5
- data/test/fixtures/files/non-ascii.csv +30 -0
- data/test/fixtures/taverna_player/interactions.yml +4 -1
- data/test/fixtures/taverna_player/runs.yml +6 -1
- data/test/functional/taverna_player/job_queue_controller_test.rb +35 -0
- data/test/functional/taverna_player/runs_controller_test.rb +20 -0
- data/test/functional/taverna_player/service_credentials_controller_test.rb +3 -3
- data/test/test_helper.rb +4 -1
- data/test/unit/helpers/taverna_player/runs_helper_test.rb +20 -1
- data/test/unit/taverna_player/run_port_test.rb +41 -5
- data/test/unit/{utils_test.rb → taverna_player/utils_test.rb} +0 -0
- data/test/unit/taverna_player/worker_test.rb +201 -0
- metadata +67 -18
- data/test/fixtures/files/crassostrea_gigas.csv +0 -737
|
File without changes
|
|
@@ -0,0 +1,201 @@
|
|
|
1
|
+
#------------------------------------------------------------------------------
|
|
2
|
+
# Copyright (c) 2014 The University of Manchester, UK.
|
|
3
|
+
#
|
|
4
|
+
# BSD Licenced. See LICENCE.rdoc for details.
|
|
5
|
+
#
|
|
6
|
+
# Taverna Player was developed in the BioVeL project, funded by the European
|
|
7
|
+
# Commission 7th Framework Programme (FP7), through grant agreement
|
|
8
|
+
# number 283359.
|
|
9
|
+
#
|
|
10
|
+
# Author: Robert Haines
|
|
11
|
+
#------------------------------------------------------------------------------
|
|
12
|
+
|
|
13
|
+
require 'flexmock'
|
|
14
|
+
require 'test_helper'
|
|
15
|
+
|
|
16
|
+
class WorkerTest < ActiveSupport::TestCase
|
|
17
|
+
include FlexMock::TestCase
|
|
18
|
+
|
|
19
|
+
setup do
|
|
20
|
+
@noop_callback = Proc.new { }
|
|
21
|
+
|
|
22
|
+
# Taverna Server config that we need to set here for Travis, etc.
|
|
23
|
+
TavernaPlayer.setup do |config|
|
|
24
|
+
config.server_address = "http://localhost:1111/taverna"
|
|
25
|
+
config.server_username = "taverna"
|
|
26
|
+
config.server_password = "taverna"
|
|
27
|
+
config.server_poll_interval = 0
|
|
28
|
+
config.server_retry_interval = 0
|
|
29
|
+
config.pre_run_callback = @noop_callback
|
|
30
|
+
config.post_run_callback = @noop_callback
|
|
31
|
+
config.run_cancelled_callback = @noop_callback
|
|
32
|
+
config.run_failed_callback = @noop_callback
|
|
33
|
+
end
|
|
34
|
+
|
|
35
|
+
# Stuff we can't test yet in TavernaPlayer::Worker.
|
|
36
|
+
flexmock(TavernaPlayer::Worker).new_instances do |w|
|
|
37
|
+
w.should_receive(:download_outputs).and_return_undefined
|
|
38
|
+
w.should_receive(:download_log).and_return_undefined
|
|
39
|
+
w.should_receive(:process_outputs).and_return([])
|
|
40
|
+
end
|
|
41
|
+
|
|
42
|
+
@run = taverna_player_runs(:seven)
|
|
43
|
+
@worker = TavernaPlayer::Worker.new(@run)
|
|
44
|
+
end
|
|
45
|
+
|
|
46
|
+
test "max attempts should be 1" do
|
|
47
|
+
assert_equal 1, @worker.max_attempts, "Max attempts was not 1."
|
|
48
|
+
end
|
|
49
|
+
|
|
50
|
+
test "run a workflow" do
|
|
51
|
+
# Stub the creation of a run on a Taverna Server with a failure first.
|
|
52
|
+
flexmock(T2Server::Server).new_instances do |s|
|
|
53
|
+
s.should_receive(:initialize_run).twice.
|
|
54
|
+
and_raise(T2Server::ServerAtCapacityError).
|
|
55
|
+
and_return(URI.parse("http://localhost/run/01"))
|
|
56
|
+
end
|
|
57
|
+
|
|
58
|
+
# Stub the Taverna Server run calls.
|
|
59
|
+
flexmock(T2Server::Run).new_instances do |r|
|
|
60
|
+
r.should_receive(:status).times(4).and_return(:initialized, :running, :running, :finished)
|
|
61
|
+
r.should_receive(:create_time).and_return(Time.now)
|
|
62
|
+
r.should_receive(:add_password_credential).and_return(true)
|
|
63
|
+
r.should_receive(:name=).once.and_return(true)
|
|
64
|
+
r.should_receive(:start).twice.and_return(false, true)
|
|
65
|
+
r.should_receive(:start_time).and_return(Time.now)
|
|
66
|
+
r.should_receive(:notifications).and_return([])
|
|
67
|
+
r.should_receive(:finish_time).and_return(Time.now)
|
|
68
|
+
r.should_receive(:delete).and_return_undefined
|
|
69
|
+
end
|
|
70
|
+
|
|
71
|
+
assert_equal :pending, @run.state, "Initial run state not ':pending'"
|
|
72
|
+
assert_nil @run.run_id, "Server run ID not nil before creation"
|
|
73
|
+
assert_nil @run.create_time, "Create time not nil before creation"
|
|
74
|
+
assert_nil @run.start_time, "Start time not nil before starting"
|
|
75
|
+
assert_nil @run.finish_time, "Finish time not nil before run"
|
|
76
|
+
|
|
77
|
+
@worker.perform
|
|
78
|
+
|
|
79
|
+
assert_equal :finished, @run.state, "Final run state not ':finished'"
|
|
80
|
+
assert_equal "01", @run.run_id, "Server run ID not set correctly"
|
|
81
|
+
assert_not_nil @run.create_time, "Create time nil after creation"
|
|
82
|
+
assert_not_nil @run.start_time, "Start time nil after starting"
|
|
83
|
+
assert_not_nil @run.finish_time, "Finish time nil after finishing"
|
|
84
|
+
end
|
|
85
|
+
|
|
86
|
+
test "workflow failure" do
|
|
87
|
+
# Stub the creation of a run on a Taverna Server.
|
|
88
|
+
flexmock(T2Server::Server).new_instances do |s|
|
|
89
|
+
s.should_receive(:initialize_run).
|
|
90
|
+
and_return(URI.parse("http://localhost/run/01"))
|
|
91
|
+
end
|
|
92
|
+
|
|
93
|
+
# Stub a Taverna Server run calls so it fails.
|
|
94
|
+
flexmock(T2Server::Run).new_instances do |r|
|
|
95
|
+
r.should_receive(:status).and_raise(RuntimeError)
|
|
96
|
+
end
|
|
97
|
+
|
|
98
|
+
assert_equal :pending, @run.state, "Initial run state not ':pending'"
|
|
99
|
+
|
|
100
|
+
@worker.perform
|
|
101
|
+
|
|
102
|
+
assert_equal :failed, @run.state, "Final run state not ':failed'"
|
|
103
|
+
assert_not_nil @run.failure_message, "Run's failure message is nil"
|
|
104
|
+
end
|
|
105
|
+
|
|
106
|
+
test "fail in failure handler" do
|
|
107
|
+
# Stub the creation of a run on a Taverna Server with complete failure.
|
|
108
|
+
flexmock(T2Server::Server).new_instances do |s|
|
|
109
|
+
s.should_receive(:initialize_run).once.
|
|
110
|
+
and_raise(RuntimeError)
|
|
111
|
+
end
|
|
112
|
+
|
|
113
|
+
# Set a failing failure callback
|
|
114
|
+
TavernaPlayer.run_failed_callback = Proc.new { raise RuntimeError }
|
|
115
|
+
|
|
116
|
+
assert_equal :pending, @run.state, "Initial run state not ':pending'"
|
|
117
|
+
|
|
118
|
+
@worker.perform
|
|
119
|
+
|
|
120
|
+
assert_equal :failed, @run.state, "Final run state not ':failed'"
|
|
121
|
+
assert_not_nil @run.failure_message, "Run's failure message is nil"
|
|
122
|
+
end
|
|
123
|
+
|
|
124
|
+
test "cancelled run" do
|
|
125
|
+
# Stub the creation of a run on a Taverna Server with a failure.
|
|
126
|
+
flexmock(T2Server::Server).new_instances do |s|
|
|
127
|
+
s.should_receive(:initialize_run).once.
|
|
128
|
+
and_raise(T2Server::ServerAtCapacityError)
|
|
129
|
+
end
|
|
130
|
+
|
|
131
|
+
# Cancel the run.
|
|
132
|
+
@run.stop = true
|
|
133
|
+
@run.save
|
|
134
|
+
|
|
135
|
+
assert_equal :pending, @run.state, "Initial run state not ':pending'"
|
|
136
|
+
|
|
137
|
+
@worker.perform
|
|
138
|
+
|
|
139
|
+
assert_equal :cancelled, @run.state, "Final run state not ':cancelled'"
|
|
140
|
+
end
|
|
141
|
+
|
|
142
|
+
test "fail in cancelled callback" do
|
|
143
|
+
# Stub the creation of a run on a Taverna Server with a failure.
|
|
144
|
+
flexmock(T2Server::Server).new_instances do |s|
|
|
145
|
+
s.should_receive(:initialize_run).once.
|
|
146
|
+
and_raise(T2Server::ServerAtCapacityError)
|
|
147
|
+
end
|
|
148
|
+
|
|
149
|
+
# Set a failing cancelled callback
|
|
150
|
+
TavernaPlayer.run_cancelled_callback = Proc.new { raise RuntimeError }
|
|
151
|
+
|
|
152
|
+
# Cancel the run.
|
|
153
|
+
@run.stop = true
|
|
154
|
+
@run.save
|
|
155
|
+
|
|
156
|
+
assert_equal :pending, @run.state, "Initial run state not ':pending'"
|
|
157
|
+
|
|
158
|
+
@worker.perform
|
|
159
|
+
|
|
160
|
+
assert_equal :failed, @run.state, "Final run state not ':failed'"
|
|
161
|
+
assert_not_nil @run.failure_message, "Run's failure message is nil"
|
|
162
|
+
end
|
|
163
|
+
|
|
164
|
+
test "fail in pre run callback" do
|
|
165
|
+
# Set a failing pre_run callback
|
|
166
|
+
TavernaPlayer.pre_run_callback = Proc.new { raise RuntimeError }
|
|
167
|
+
|
|
168
|
+
assert_equal :pending, @run.state, "Initial run state not ':pending'"
|
|
169
|
+
|
|
170
|
+
@worker.perform
|
|
171
|
+
|
|
172
|
+
assert_equal :failed, @run.state, "Final run state not ':failed'"
|
|
173
|
+
assert_not_nil @run.failure_message, "Run's failure message is nil"
|
|
174
|
+
end
|
|
175
|
+
|
|
176
|
+
test "fail in post run callback" do
|
|
177
|
+
# Set a failing post_run callback
|
|
178
|
+
TavernaPlayer.post_run_callback = Proc.new { raise RuntimeError }
|
|
179
|
+
|
|
180
|
+
assert_equal :pending, @run.state, "Initial run state not ':pending'"
|
|
181
|
+
|
|
182
|
+
@worker.perform
|
|
183
|
+
|
|
184
|
+
assert_equal :failed, @run.state, "Final run state not ':failed'"
|
|
185
|
+
assert_not_nil @run.failure_message, "Run's failure message is nil"
|
|
186
|
+
end
|
|
187
|
+
|
|
188
|
+
test "timed out run" do
|
|
189
|
+
# Stub the creation of a run on a Taverna Server with a timeout.
|
|
190
|
+
flexmock(T2Server::Server).new_instances do |s|
|
|
191
|
+
s.should_receive(:initialize_run).once.
|
|
192
|
+
and_raise(Delayed::WorkerTimeout)
|
|
193
|
+
end
|
|
194
|
+
|
|
195
|
+
assert_equal :pending, @run.state, "Initial run state not ':pending'"
|
|
196
|
+
|
|
197
|
+
@worker.perform
|
|
198
|
+
|
|
199
|
+
assert_equal :timeout, @run.state, "Final run state not ':timeout'"
|
|
200
|
+
end
|
|
201
|
+
end
|
metadata
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
|
2
2
|
name: taverna-player
|
|
3
3
|
version: !ruby/object:Gem::Version
|
|
4
|
-
version: 0.
|
|
4
|
+
version: 0.6.0
|
|
5
5
|
prerelease:
|
|
6
6
|
platform: ruby
|
|
7
7
|
authors:
|
|
@@ -9,7 +9,7 @@ authors:
|
|
|
9
9
|
autorequire:
|
|
10
10
|
bindir: bin
|
|
11
11
|
cert_chain: []
|
|
12
|
-
date: 2014-
|
|
12
|
+
date: 2014-03-06 00:00:00.000000000 Z
|
|
13
13
|
dependencies:
|
|
14
14
|
- !ruby/object:Gem::Dependency
|
|
15
15
|
name: rails
|
|
@@ -34,7 +34,7 @@ dependencies:
|
|
|
34
34
|
requirements:
|
|
35
35
|
- - ~>
|
|
36
36
|
- !ruby/object:Gem::Version
|
|
37
|
-
version: 3.0
|
|
37
|
+
version: '3.0'
|
|
38
38
|
type: :runtime
|
|
39
39
|
prerelease: false
|
|
40
40
|
version_requirements: !ruby/object:Gem::Requirement
|
|
@@ -42,7 +42,7 @@ dependencies:
|
|
|
42
42
|
requirements:
|
|
43
43
|
- - ~>
|
|
44
44
|
- !ruby/object:Gem::Version
|
|
45
|
-
version: 3.0
|
|
45
|
+
version: '3.0'
|
|
46
46
|
- !ruby/object:Gem::Dependency
|
|
47
47
|
name: paperclip
|
|
48
48
|
requirement: !ruby/object:Gem::Requirement
|
|
@@ -50,7 +50,7 @@ dependencies:
|
|
|
50
50
|
requirements:
|
|
51
51
|
- - ~>
|
|
52
52
|
- !ruby/object:Gem::Version
|
|
53
|
-
version:
|
|
53
|
+
version: '4.1'
|
|
54
54
|
type: :runtime
|
|
55
55
|
prerelease: false
|
|
56
56
|
version_requirements: !ruby/object:Gem::Requirement
|
|
@@ -58,7 +58,7 @@ dependencies:
|
|
|
58
58
|
requirements:
|
|
59
59
|
- - ~>
|
|
60
60
|
- !ruby/object:Gem::Version
|
|
61
|
-
version:
|
|
61
|
+
version: '4.1'
|
|
62
62
|
- !ruby/object:Gem::Dependency
|
|
63
63
|
name: t2-server
|
|
64
64
|
requirement: !ruby/object:Gem::Requirement
|
|
@@ -82,7 +82,7 @@ dependencies:
|
|
|
82
82
|
requirements:
|
|
83
83
|
- - ~>
|
|
84
84
|
- !ruby/object:Gem::Version
|
|
85
|
-
version:
|
|
85
|
+
version: '4.0'
|
|
86
86
|
type: :runtime
|
|
87
87
|
prerelease: false
|
|
88
88
|
version_requirements: !ruby/object:Gem::Requirement
|
|
@@ -90,7 +90,7 @@ dependencies:
|
|
|
90
90
|
requirements:
|
|
91
91
|
- - ~>
|
|
92
92
|
- !ruby/object:Gem::Version
|
|
93
|
-
version:
|
|
93
|
+
version: '4.0'
|
|
94
94
|
- !ruby/object:Gem::Dependency
|
|
95
95
|
name: daemons
|
|
96
96
|
requirement: !ruby/object:Gem::Requirement
|
|
@@ -130,7 +130,7 @@ dependencies:
|
|
|
130
130
|
requirements:
|
|
131
131
|
- - ~>
|
|
132
132
|
- !ruby/object:Gem::Version
|
|
133
|
-
version: 1.
|
|
133
|
+
version: '1.1'
|
|
134
134
|
type: :runtime
|
|
135
135
|
prerelease: false
|
|
136
136
|
version_requirements: !ruby/object:Gem::Requirement
|
|
@@ -138,7 +138,7 @@ dependencies:
|
|
|
138
138
|
requirements:
|
|
139
139
|
- - ~>
|
|
140
140
|
- !ruby/object:Gem::Version
|
|
141
|
-
version: 1.
|
|
141
|
+
version: '1.1'
|
|
142
142
|
- !ruby/object:Gem::Dependency
|
|
143
143
|
name: rails_autolink
|
|
144
144
|
requirement: !ruby/object:Gem::Requirement
|
|
@@ -178,7 +178,7 @@ dependencies:
|
|
|
178
178
|
requirements:
|
|
179
179
|
- - ~>
|
|
180
180
|
- !ruby/object:Gem::Version
|
|
181
|
-
version:
|
|
181
|
+
version: '2.0'
|
|
182
182
|
type: :runtime
|
|
183
183
|
prerelease: false
|
|
184
184
|
version_requirements: !ruby/object:Gem::Requirement
|
|
@@ -186,7 +186,7 @@ dependencies:
|
|
|
186
186
|
requirements:
|
|
187
187
|
- - ~>
|
|
188
188
|
- !ruby/object:Gem::Version
|
|
189
|
-
version:
|
|
189
|
+
version: '2.0'
|
|
190
190
|
- !ruby/object:Gem::Dependency
|
|
191
191
|
name: pmrpc-rails
|
|
192
192
|
requirement: !ruby/object:Gem::Requirement
|
|
@@ -219,6 +219,38 @@ dependencies:
|
|
|
219
219
|
- - ! '>='
|
|
220
220
|
- !ruby/object:Gem::Version
|
|
221
221
|
version: '0'
|
|
222
|
+
- !ruby/object:Gem::Dependency
|
|
223
|
+
name: coveralls
|
|
224
|
+
requirement: !ruby/object:Gem::Requirement
|
|
225
|
+
none: false
|
|
226
|
+
requirements:
|
|
227
|
+
- - ! '>='
|
|
228
|
+
- !ruby/object:Gem::Version
|
|
229
|
+
version: '0'
|
|
230
|
+
type: :development
|
|
231
|
+
prerelease: false
|
|
232
|
+
version_requirements: !ruby/object:Gem::Requirement
|
|
233
|
+
none: false
|
|
234
|
+
requirements:
|
|
235
|
+
- - ! '>='
|
|
236
|
+
- !ruby/object:Gem::Version
|
|
237
|
+
version: '0'
|
|
238
|
+
- !ruby/object:Gem::Dependency
|
|
239
|
+
name: flexmock
|
|
240
|
+
requirement: !ruby/object:Gem::Requirement
|
|
241
|
+
none: false
|
|
242
|
+
requirements:
|
|
243
|
+
- - ~>
|
|
244
|
+
- !ruby/object:Gem::Version
|
|
245
|
+
version: '1.3'
|
|
246
|
+
type: :development
|
|
247
|
+
prerelease: false
|
|
248
|
+
version_requirements: !ruby/object:Gem::Requirement
|
|
249
|
+
none: false
|
|
250
|
+
requirements:
|
|
251
|
+
- - ~>
|
|
252
|
+
- !ruby/object:Gem::Version
|
|
253
|
+
version: '1.3'
|
|
222
254
|
description: ! 'Taverna Player is a Ruby on Rails plugin to run Taverna Workflows
|
|
223
255
|
using Taverna Server. Taverna Player surfaces a workflow in three ways: As a Web
|
|
224
256
|
interface in the browser; As an embeddable widget to be included in any other Web
|
|
@@ -232,6 +264,7 @@ extensions: []
|
|
|
232
264
|
extra_rdoc_files: []
|
|
233
265
|
files:
|
|
234
266
|
- .gitignore
|
|
267
|
+
- .travis.yml
|
|
235
268
|
- CHANGES.rdoc
|
|
236
269
|
- Gemfile
|
|
237
270
|
- LICENCE.rdoc
|
|
@@ -243,6 +276,7 @@ files:
|
|
|
243
276
|
- app/assets/stylesheets/taverna_player/application.css
|
|
244
277
|
- app/assets/stylesheets/taverna_player/coderay.css
|
|
245
278
|
- app/controllers/taverna_player/application_controller.rb
|
|
279
|
+
- app/controllers/taverna_player/job_queue_controller.rb
|
|
246
280
|
- app/controllers/taverna_player/runs_controller.rb
|
|
247
281
|
- app/controllers/taverna_player/service_credentials_controller.rb
|
|
248
282
|
- app/helpers/taverna_player/application_helper.rb
|
|
@@ -252,6 +286,7 @@ files:
|
|
|
252
286
|
- app/models/taverna_player/run_port.rb
|
|
253
287
|
- app/models/taverna_player/service_credential.rb
|
|
254
288
|
- app/views/layouts/taverna_player/embedded.html.erb
|
|
289
|
+
- app/views/taverna_player/job_queue/index.html.erb
|
|
255
290
|
- app/views/taverna_player/runs/_button.html.erb
|
|
256
291
|
- app/views/taverna_player/runs/_info.html.erb
|
|
257
292
|
- app/views/taverna_player/runs/_info.json.jbuilder
|
|
@@ -280,6 +315,7 @@ files:
|
|
|
280
315
|
- app/views/taverna_player/service_credentials/index.html.erb
|
|
281
316
|
- app/views/taverna_player/service_credentials/new.html.erb
|
|
282
317
|
- app/views/taverna_player/service_credentials/show.html.erb
|
|
318
|
+
- config/locales/en.yml
|
|
283
319
|
- config/routes.rb
|
|
284
320
|
- db/migrate/20130313105546_create_taverna_player_runs.rb
|
|
285
321
|
- db/migrate/20130315163019_create_taverna_player_run_ports.rb
|
|
@@ -310,6 +346,7 @@ files:
|
|
|
310
346
|
- db/migrate/20131127162157_add_indexes_where_missing.rb
|
|
311
347
|
- db/migrate/20131127163438_remove_run_id_index_from_taverna_player_runs.rb
|
|
312
348
|
- db/migrate/20131127171823_remove_unused_paperclip_columns.rb
|
|
349
|
+
- db/migrate/20140226135723_change_taverna_player_runs_status_message_to_use_keys.rb
|
|
313
350
|
- lib/generators/taverna_player/callbacks_generator.rb
|
|
314
351
|
- lib/generators/taverna_player/controllers_generator.rb
|
|
315
352
|
- lib/generators/taverna_player/install_generator.rb
|
|
@@ -320,6 +357,7 @@ files:
|
|
|
320
357
|
- lib/generators/templates/ReadMe.txt
|
|
321
358
|
- lib/generators/templates/callbacks/render_callbacks.rb
|
|
322
359
|
- lib/generators/templates/callbacks/worker_callbacks.rb
|
|
360
|
+
- lib/generators/templates/controllers/job_queue_controller.rb
|
|
323
361
|
- lib/generators/templates/controllers/runs_controller.rb
|
|
324
362
|
- lib/generators/templates/controllers/service_credentials_controller.rb
|
|
325
363
|
- lib/generators/templates/models/run.rb
|
|
@@ -330,6 +368,7 @@ files:
|
|
|
330
368
|
- lib/tasks/delete-old-embedded-runs.rake
|
|
331
369
|
- lib/taverna-player.rb
|
|
332
370
|
- lib/taverna_player/concerns/callback.rb
|
|
371
|
+
- lib/taverna_player/concerns/controllers/job_queue_controller.rb
|
|
333
372
|
- lib/taverna_player/concerns/controllers/runs_controller.rb
|
|
334
373
|
- lib/taverna_player/concerns/controllers/service_credentials_controller.rb
|
|
335
374
|
- lib/taverna_player/concerns/models/input_port.rb
|
|
@@ -377,6 +416,7 @@ files:
|
|
|
377
416
|
- test/dummy/config/initializers/taverna_server.rb.example
|
|
378
417
|
- test/dummy/config/initializers/wrap_parameters.rb
|
|
379
418
|
- test/dummy/config/locales/en.yml
|
|
419
|
+
- test/dummy/config/locales/taverna_player.en.yml
|
|
380
420
|
- test/dummy/config/routes.rb
|
|
381
421
|
- test/dummy/db/migrate/20130314103555_create_workflows.rb
|
|
382
422
|
- test/dummy/db/migrate/20130318141557_create_taverna_player_runs.taverna_player.rb
|
|
@@ -409,6 +449,7 @@ files:
|
|
|
409
449
|
- test/dummy/db/migrate/20131127163538_add_indexes_where_missing.taverna_player.rb
|
|
410
450
|
- test/dummy/db/migrate/20131127163539_remove_run_id_index_from_taverna_player_runs.taverna_player.rb
|
|
411
451
|
- test/dummy/db/migrate/20131127172420_remove_unused_paperclip_columns.taverna_player.rb
|
|
452
|
+
- test/dummy/db/migrate/20140226143013_change_taverna_player_runs_status_message_to_use_keys.taverna_player.rb
|
|
412
453
|
- test/dummy/db/schema.rb
|
|
413
454
|
- test/dummy/lib/callbacks.rb
|
|
414
455
|
- test/dummy/log/.gitkeep
|
|
@@ -420,13 +461,15 @@ files:
|
|
|
420
461
|
- test/dummy/script/rails
|
|
421
462
|
- test/dummy/test/functional/home_controller_test.rb
|
|
422
463
|
- test/dummy/test/functional/workflows_controller_test.rb
|
|
423
|
-
- test/
|
|
464
|
+
- test/dummy/tmp/.gitkeep
|
|
465
|
+
- test/fixtures/files/non-ascii.csv
|
|
424
466
|
- test/fixtures/taverna_player/interactions.yml
|
|
425
467
|
- test/fixtures/taverna_player/run_ports.yml
|
|
426
468
|
- test/fixtures/taverna_player/runs.yml
|
|
427
469
|
- test/fixtures/taverna_player/service_credentials.yml
|
|
428
470
|
- test/fixtures/users.yml
|
|
429
471
|
- test/fixtures/workflows.yml
|
|
472
|
+
- test/functional/taverna_player/job_queue_controller_test.rb
|
|
430
473
|
- test/functional/taverna_player/runs_controller_test.rb
|
|
431
474
|
- test/functional/taverna_player/service_credentials_controller_test.rb
|
|
432
475
|
- test/taverna_player_test.rb
|
|
@@ -437,7 +480,8 @@ files:
|
|
|
437
480
|
- test/unit/taverna_player/run_port_test.rb
|
|
438
481
|
- test/unit/taverna_player/run_test.rb
|
|
439
482
|
- test/unit/taverna_player/service_credential_test.rb
|
|
440
|
-
- test/unit/utils_test.rb
|
|
483
|
+
- test/unit/taverna_player/utils_test.rb
|
|
484
|
+
- test/unit/taverna_player/worker_test.rb
|
|
441
485
|
- test/workflows/hello.t2flow
|
|
442
486
|
- test/workflows/list_with_errors.t2flow
|
|
443
487
|
- test/workflows/pass_through.t2flow
|
|
@@ -456,7 +500,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
|
|
|
456
500
|
version: '0'
|
|
457
501
|
segments:
|
|
458
502
|
- 0
|
|
459
|
-
hash:
|
|
503
|
+
hash: 94152040374779137
|
|
460
504
|
required_rubygems_version: !ruby/object:Gem::Requirement
|
|
461
505
|
none: false
|
|
462
506
|
requirements:
|
|
@@ -465,7 +509,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
|
|
|
465
509
|
version: '0'
|
|
466
510
|
segments:
|
|
467
511
|
- 0
|
|
468
|
-
hash:
|
|
512
|
+
hash: 94152040374779137
|
|
469
513
|
requirements: []
|
|
470
514
|
rubyforge_project:
|
|
471
515
|
rubygems_version: 1.8.21
|
|
@@ -503,6 +547,7 @@ test_files:
|
|
|
503
547
|
- test/dummy/config/initializers/taverna_server.rb.example
|
|
504
548
|
- test/dummy/config/initializers/wrap_parameters.rb
|
|
505
549
|
- test/dummy/config/locales/en.yml
|
|
550
|
+
- test/dummy/config/locales/taverna_player.en.yml
|
|
506
551
|
- test/dummy/config/routes.rb
|
|
507
552
|
- test/dummy/db/migrate/20130314103555_create_workflows.rb
|
|
508
553
|
- test/dummy/db/migrate/20130318141557_create_taverna_player_runs.taverna_player.rb
|
|
@@ -535,6 +580,7 @@ test_files:
|
|
|
535
580
|
- test/dummy/db/migrate/20131127163538_add_indexes_where_missing.taverna_player.rb
|
|
536
581
|
- test/dummy/db/migrate/20131127163539_remove_run_id_index_from_taverna_player_runs.taverna_player.rb
|
|
537
582
|
- test/dummy/db/migrate/20131127172420_remove_unused_paperclip_columns.taverna_player.rb
|
|
583
|
+
- test/dummy/db/migrate/20140226143013_change_taverna_player_runs_status_message_to_use_keys.taverna_player.rb
|
|
538
584
|
- test/dummy/db/schema.rb
|
|
539
585
|
- test/dummy/lib/callbacks.rb
|
|
540
586
|
- test/dummy/log/.gitkeep
|
|
@@ -546,13 +592,15 @@ test_files:
|
|
|
546
592
|
- test/dummy/script/rails
|
|
547
593
|
- test/dummy/test/functional/home_controller_test.rb
|
|
548
594
|
- test/dummy/test/functional/workflows_controller_test.rb
|
|
549
|
-
- test/
|
|
595
|
+
- test/dummy/tmp/.gitkeep
|
|
596
|
+
- test/fixtures/files/non-ascii.csv
|
|
550
597
|
- test/fixtures/taverna_player/interactions.yml
|
|
551
598
|
- test/fixtures/taverna_player/run_ports.yml
|
|
552
599
|
- test/fixtures/taverna_player/runs.yml
|
|
553
600
|
- test/fixtures/taverna_player/service_credentials.yml
|
|
554
601
|
- test/fixtures/users.yml
|
|
555
602
|
- test/fixtures/workflows.yml
|
|
603
|
+
- test/functional/taverna_player/job_queue_controller_test.rb
|
|
556
604
|
- test/functional/taverna_player/runs_controller_test.rb
|
|
557
605
|
- test/functional/taverna_player/service_credentials_controller_test.rb
|
|
558
606
|
- test/taverna_player_test.rb
|
|
@@ -563,7 +611,8 @@ test_files:
|
|
|
563
611
|
- test/unit/taverna_player/run_port_test.rb
|
|
564
612
|
- test/unit/taverna_player/run_test.rb
|
|
565
613
|
- test/unit/taverna_player/service_credential_test.rb
|
|
566
|
-
- test/unit/utils_test.rb
|
|
614
|
+
- test/unit/taverna_player/utils_test.rb
|
|
615
|
+
- test/unit/taverna_player/worker_test.rb
|
|
567
616
|
- test/workflows/hello.t2flow
|
|
568
617
|
- test/workflows/list_with_errors.t2flow
|
|
569
618
|
- test/workflows/pass_through.t2flow
|