talia_core 0.4.22 → 0.5.0

data/generators/talia_admin/templates/public/javascripts/ie7-recalc.js

@@ -0,0 +1,166 @@
+
+// =========================================================================
+// ie7-recalc.js
+// =========================================================================
+
+(function() {
+  /* ---------------------------------------------------------------------
+  
+    This allows refreshing of IE7 style rules. If you modify the DOM
+    you can update IE7 by calling document.recalc().
+  
+    This should be the LAST module included.
+  
+  --------------------------------------------------------------------- */
+  
+  if (!IE7.loaded) return;
+  
+  // remove all IE7 classes from an element
+  CLASSES = /\sie7_class\d+/g;
+  
+  IE7.CSS.extend({
+    // store for elements that have style properties calculated
+    elements: {},
+    handlers: [],
+    
+    // clear IE7 classes and styles
+    reset: function() {
+      this.removeEventHandlers();
+      // reset IE7 classes here
+      var elements = this.elements;
+      for (var i in elements) elements[i].runtimeStyle.cssText = "";
+      this.elements = {};
+      // reset runtimeStyle here
+      var elements = IE7.Rule.elements;
+      for (var i in elements) {
+        with (elements[i]) className = className.replace(CLASSES, "");
+      }
+      IE7.Rule.elements = {};
+    },
+    
+    reload: function() {
+      this.rules = [];
+      this.getInlineStyles();
+      this.screen.load();
+      if (this.print) this.print.load();
+      this.refresh();
+      this.trash();
+    },
+    
+    addRecalc: function(propertyName, test, handler, replacement) {
+      // call the ancestor method to add a wrapped recalc method
+      this.base(propertyName, test, function(element) {
+        // execute the original recalc method
+        handler(element);
+        // store a reference to this element so we can clear its style later
+        IE7.CSS.elements[element.uniqueID] = element;
+      }, replacement);
+    },
+    
+    recalc: function() {
+      // clear IE7 styles and classes
+      this.reset();
+      // execute the ancestor method to perform recalculations
+      this.base();
+    },
+    
+    addEventHandler: function(element, type, handler) {
+      element.attachEvent(type, handler);
+      // store the handler so it can be detached later
+      this.handlers.push(arguments);
+    },
+    
+    removeEventHandlers: function() {
+      var handler;
+       while (handler = this.handlers.pop()) {
+         handler[0].detachEvent(handler[1], handler[2]);
+       }
+    },
+    
+    getInlineStyles: function() {
+      // load inline styles
+      var styleSheets = document.getElementsByTagName("style"), styleSheet;
+      for (var i = styleSheets.length - 1; (styleSheet = styleSheets[i]); i--) {
+        if (!styleSheet.disabled && !styleSheet.ie7) {
+          var cssText = styleSheet.cssText || styleSheet.innerHTML;
+          this.styles.push(cssText);
+          styleSheet.cssText = cssText;
+        }
+      }
+    },
+    
+    trash: function() {
+      // trash the old style sheets
+      var styleSheets = document.styleSheets, styleSheet, i;
+      for (i = 0; i < styleSheets.length; i++) {
+        styleSheet = styleSheets[i];
+        if (!styleSheet.ie7 && !styleSheet.cssText && styleSheet.cssText != '') {
+          styleSheet.cssText = styleSheet.cssText;
+        }
+      }
+      this.base();
+    },
+    
+    getText: function(styleSheet) {
+      return styleSheet.cssText || this.base(styleSheet);
+    }
+  });
+  
+  // remove event handlers (they eat memory)
+  IE7.CSS.addEventHandler(window, "onunload", function() {
+     IE7.CSS.removeEventHandlers();
+  });
+  
+  // store all elements with an IE7 class assigned
+  IE7.Rule.elements = {};
+
+  IE7.Rule.prototype.extend({
+    add: function(element) {
+      // execute the ancestor "add" method
+      this.base(element);
+      // store a reference to this element so we can clear its classes later
+      IE7.Rule.elements[element.uniqueID] = element;
+    }
+  });
+
+  // store created pseudo elements
+  if (IE7.PseudoElement) {
+    IE7.PseudoElement.hash = {};
+  
+    IE7.PseudoElement.prototype.extend({
+      create: function(target) {
+        var key = this.selector + ":" + target.uniqueID;
+        if (!IE7.PseudoElement.hash[key]) {
+          IE7.PseudoElement.hash[key] = true;
+          this.base(target);
+        }
+      }
+    });
+  }
+  
+  IE7.HTML.extend({
+    elements: {},
+    
+    addRecalc: function(selector, handler) {
+      // call the ancestor method to add a wrapped recalc method
+      this.base(selector, function(element) {
+        if (!this.elements[element.uniqueID]) {
+          // execute the original recalc method
+          handler(element);
+          // store a reference to this element so that
+          //  it is not "fixed" again
+          this.elements[element.uniqueID] = element;
+        }
+      });
+    }
+  });
+  
+  // allow refreshing of IE7 fixes
+  document.recalc = function(reload) {
+    if (IE7.CSS.screen) {
+      if (reload) IE7.CSS.reload();
+      IE7.recalc();
+    }
+  };
+
+})();

data/generators/talia_admin/templates/public/javascripts/lowpro.js

@@ -1,10 +1,8 @@
-//= require <prototype>
-
 LowPro = {};
 LowPro.Version = '0.5';
 LowPro.CompatibleWithPrototype = '1.6';
 
-if (Prototype.Version.indexOf(LowPro.CompatibleWithPrototype) != 0 && console && console.warn)
+if (Prototype.Version.indexOf(LowPro.CompatibleWithPrototype) != 0 && window.console && window.console.warn)
   console.warn("This version of Low Pro is tested with Prototype " + LowPro.CompatibleWithPrototype + 
                   " it may not work as expected with this version (" + Prototype.Version + ")");
 
@@ -17,19 +15,19 @@ DOM = {};
 // DOMBuilder for prototype
 DOM.Builder = {
 	tagFunc : function(tag) {
-	  return function() {
-	    var attrs, children; 
-	    if (arguments.length>0) { 
-	      if (arguments[0].nodeName || 
-	        typeof arguments[0] == "string") 
-	        children = arguments; 
-	      else { 
-	        attrs = arguments[0]; 
-	        children = Array.prototype.slice.call(arguments, 1); 
-	      };
-	    }
-	    return DOM.Builder.create(tag, attrs, children);
-	  };
+    return function() {
+     var attrs, children;
+     if (arguments.length>0) {
+       if (arguments[0].constructor == Object) {
+         attrs = arguments[0];
+         children = Array.prototype.slice.call(arguments, 1);
+       } else {
+         children = arguments;
+       };
+       children = $A(children).flatten()
+     }
+     return DOM.Builder.create(tag, attrs, children);
+    };
   },
 	create : function(tag, attrs, children) {
 		attrs = attrs || {}; children = children || []; tag = tag.toLowerCase();
@@ -111,6 +109,14 @@ Event.addBehavior = function(rules) {
   
 };
 
+Event.delegate = function(rules) {
+  return function(e) {
+      var element = $(e.element());
+      for (var selector in rules)
+        if (element.match(selector)) return rules[selector].apply(this, $A(arguments));
+    }
+}
+
 Object.extend(Event.addBehavior, {
   rules : {}, cache : [],
   reassignAfterAjax : false,
@@ -121,12 +127,12 @@ Object.extend(Event.addBehavior, {
       var observer = rules[selector];
       var sels = selector.split(',');
       sels.each(function(sel) {
-        var parts = sel.split(/:(?=[a-z]+$)/), css = parts[0], event = parts[1];
+        var match = sel.match(/^([^:]*)(?::(.*)$)?/), css = match[1], event = match[2];
         $$(css).each(function(element) {
           if (event) {
-            observer = Event.addBehavior._wrapObserver(observer);
-            $(element).observe(event, observer);
-            Event.addBehavior.cache.push([element, event, observer]);
+            var wrappedObserver = Event.addBehavior._wrapObserver(observer);
+            $(element).observe(event, wrappedObserver);
+            Event.addBehavior.cache.push([element, event, wrappedObserver]);
           } else {
             if (!element.$$assigned || !element.$$assigned.include(observer)) {
               if (observer.attach) observer.attach(element);
@@ -200,7 +206,6 @@ var Behavior = {
       parent = properties.shift();
 
       var behavior = function() { 
-        var behavior = arguments.callee;
         if (!this.initialize) {
           var args = $A(arguments);
 
@@ -247,13 +252,17 @@ var Behavior = {
       return new this(element, Array.prototype.slice.call(arguments, 1));
     },
     _bindEvents : function(bound) {
-      for (var member in bound)
-        if (member.match(/^on(.+)/) && typeof bound[member] == 'function')
-          bound.element.observe(RegExp.$1, Event.addBehavior._wrapObserver(bound[member].bindAsEventListener(bound)));
+      for (var member in bound) {
+        var matches = member.match(/^on(.+)/);
+        if (matches && typeof bound[member] == 'function')
+          bound.element.observe(matches[1], Event.addBehavior._wrapObserver(bound[member].bindAsEventListener(bound)));
+      }
     }
   }
 };
 
+
+
 Remote = Behavior.create({
   initialize: function(options) {
     if (this.element.nodeName == 'FORM') new Remote.Form(this.element, options);
@@ -266,11 +275,19 @@ Remote.Base = {
     this.options = Object.extend({
       evaluateScripts : true
     }, options || {});
+    
+    this._bindCallbacks();
   },
   _makeRequest : function(options) {
     if (options.update) new Ajax.Updater(options.update, options.url, options);
     else new Ajax.Request(options.url, options);
     return false;
+  },
+  _bindCallbacks: function() {
+    $w('onCreate onComplete onException onFailure onInteractive onLoading onLoaded onSuccess').each(function(cb) {
+      if (Object.isFunction(this.options[cb]))
+        this.options[cb] = this.options[cb].bind(this);
+    }.bind(this));
   }
 }
 
@@ -318,4 +335,5 @@ Observed = Behavior.create({
     return (this.options.frequency) ? new Form.Element.Observer(this.element, this.options.frequency, this.callback) :
                                       new Form.Element.EventObserver(this.element, this.callback);
   }
-});
+});
+

data/generators/talia_admin/templates/public/stylesheets/hobo-rapid.css

@@ -0,0 +1,94 @@
+/**** Default styling for Rapid ****/
+
+#ajax_progress {
+    color: gray;
+    float: right;
+    margin: 20px;
+    position: fixed;
+    background: white;
+    font-family: tahoma, sans-serif;
+    display: none;
+    z-index: 10;
+}
+
+#ajax_progress div {
+    margin: 10px;
+    padding: 3px;
+/*    padding-top: -15px;*/
+}
+
+#ajax_progress img {
+    padding-left: 6px;
+    vertical-align: middle;
+}
+
+
+/* Scriptaculous Autocompleter ---*/
+
+div.completions_popup {
+    position:absolute;
+    width:250px;
+    background-color:white;
+    border:1px solid #888;
+    margin:0px;
+    padding:0px;
+    z-index:100;
+}
+div.completions_popup ul {
+    list-style-type:none;
+    margin:0px;
+    padding:0px;
+}
+div.completions_popup ul li.selected { background-color: #ffb;}
+div.completions_popup ul li {
+    list-style-type:none;
+    display:block;
+    margin:0;
+    padding:2px;
+    cursor:pointer;
+}
+
+
+.field_list   { width:95%; }
+.field_list td { padding: 5px; vertical-align: middle; }
+.field_list td.field_label {
+    text-align: left; width: 1px; white-space: nowrap; vertical-align: top;
+    padding-top: 10px; padding-bottom: 10px;
+}
+.field_list input[type=text] { width: 100%; }
+.field_list input, .field_list textarea { margin: -2px 0 0 0; }
+.field_list textarea { width: 100%; margin: 0; }
+/*
+td span.in_place_textfield_bhv, td span.in_place_textarea_bhv, td span.in_place_html_textarea_bhv {
+    display: block; border: 1px solid #ddd;
+    padding: 4px; background: #fafafa;
+}
+*/
+table.login-table, table.login-table td {border: none;}
+.login_table td.field_label { vertical-align: middle; }
+/*table.login-table input {font-size: 16px; color: black;}*/
+
+input[type=text].wide { width: 100%; }
+textarea { height: 200px; }
+textarea.wide { width: 100%; }
+textarea.tall { height: 350px; }
+
+.field_list input.percentage {width: 25px; display: inline; margin-right: 5px; padding: 1px 3px;}
+
+/* rails error message */
+.error_messages {
+	font-family: "Lucida Grande", arial, sans-serif;
+	background: #9d0018;
+	border: 1px solid #7a0013;
+	padding: 20px;
+	color: white;
+	margin-bottom: 20px;
+}
+.error_messages h2 {
+	text-transform: none;
+	letter-spacing: normal;
+	color: white;
+}
+.error_messages li {
+	margin-left: 20px;
+}

data/generators/talia_admin/templates/public/stylesheets/reset.css

@@ -0,0 +1,95 @@
+/******** Reset default browser CSS styles. *********/
+/* Based on Blueprint */
+
+html, body, div, span, applet, object, iframe,
+h1, h2, h3, h4, h5, h6, p, blockquote, pre,
+a, abbr, acronym, address, big, cite,
+del, dfn, font, img, ins, kbd, q, s, samp,
+small, strike, sub, sup, tt, var,
+dl, dt, dd, ol, ul, li,
+fieldset, form, label, legend,
+table, caption, tbody, tfoot, thead, tr, th, td {
+	margin: 0;
+	padding: 0;
+	border: 0;
+	outline: 0;
+	font-weight: inherit;
+	font-style: inherit;
+	font-size: 100%;
+	font-family: inherit;
+	vertical-align: baseline;
+}
+
+code {
+	margin: 0;
+	padding: 0;
+	border: 0;
+	outline: 0;
+	font-weight: inherit;
+	font-style: inherit;
+	font-size: 100%;
+	vertical-align: baseline;    
+}
+
+em {
+	margin: 0;
+	padding: 0;
+	border: 0;
+	outline: 0;
+	font-weight: inherit;
+	font-size: 100%;
+	font-family: inherit;
+	vertical-align: baseline;
+}
+
+strong {
+    margin: 0;
+	padding: 0;
+	border: 0;
+	outline: 0;
+	font-style: inherit;
+	font-size: 100%;
+	font-family: inherit;
+	vertical-align: baseline;
+}
+
+/* Remember to define focus styles! */
+:focus {
+	outline: 0;
+}
+body {
+	line-height: 1;
+	color: black;
+	background: white;
+}
+
+/* Tables still need 'cellspacing="0"' in the markup. */
+table {
+	border-collapse: separate;
+	border-spacing: 0;
+}
+caption, th, td {
+	text-align: left;
+	font-weight: normal;
+}
+
+/* Remove possible quote marks (") from <q>, <blockquote>. */
+blockquote:before, blockquote:after,
+q:before, q:after {
+	content: "";
+}
+blockquote, q {
+	quotes: "" "";
+}
+
+body {
+  font-family: "Lucida Grande", Helvetica, Arial, Verdana, sans-serif;
+  font-size: 12px;
+}
+h1,h2,h3,h4,h5,h6 { font-weight: bold; }
+h1 { font-size: 36px;}
+h2 { font-size: 28px;}
+h3 { font-size: 18px;}
+h4 { font-size: 14px;}
+h5 { font-size: 12px;}
+h6 { font-size: 10px;}

data/generators/talia_admin/templates/test/fixtures/users.yml

@@ -0,0 +1,7 @@
+# Read about fixtures at http://ar.rubyonrails.org/classes/Fixtures.html
+
+# one:
+#   column: value
+#
+# two:
+#   column: value

data/generators/talia_admin/templates/test/functional/admin/{custom_templates_controller_test.rb → front_controller_test.rb}

@@ -1,6 +1,6 @@
 require File.dirname(__FILE__) + '/../../test_helper'
 
-class Admin::CustomTemplatesControllerTest < ActionController::TestCase
+class Admin::FrontControllerTest < ActionController::TestCase
   # Replace this with your real tests.
   def test_truth
     assert true

data/generators/talia_admin/templates/test/functional/users_controller_test.rb

@@ -0,0 +1,8 @@
+require File.dirname(__FILE__) + '/../test_helper'
+
+class UsersControllerTest < ActionController::TestCase
+  # Replace this with your real tests.
+  def test_truth
+    assert true
+  end
+end

data/generators/talia_admin/templates/test/unit/user_test.rb

@@ -0,0 +1,8 @@
+require File.dirname(__FILE__) + '/../test_helper'
+
+class UserTest < ActiveSupport::TestCase
+  # Replace this with your real tests.
+  def test_truth
+    assert true
+  end
+end

data/generators/talia_base/talia_base_generator.rb

@@ -4,15 +4,23 @@ class TaliaBaseGenerator < Rails::Generator::Base
   
   include GeneratorHelpers
   
-  def manifest    
-    install_plugin("git://github.com/activescaffold/active_scaffold.git")
-    install_plugin("git://github.com/timcharper/role_requirement.git")
+  def manifest
     
     record do |m|
+      # Write the routes. Remember that these end up in the file in the reverse order of the calls
+      m.rewrite_file 'config/routes.rb', "map.connect ':controller/:action/:id.:format'", "# map.connect ':controller/:action/:id.:format'"
+      m.route "# Default semantic dispatch\n  map.connect ':dispatch_uri.:format', :controller => 'sources', :action => 'dispatch',\n    :requirements => { :dispatch_uri => /[^\\.]+/ }"
+      m.route "# Routes for the sources\n  map.resources :sources, :requirements => { :id => /.+/  }"
+      m.route "# Routes for types\n  map.resources :types"
+      m.route "map.resources :data_records, :controller => 'source_data'"
+      m.route "map.connect 'source_data/:type/:location', :controller => 'source_data',\n    :action => 'show_tloc',\n    :requirements => { :location => /[^\\/]+/ } # Force the location to match also filenames with points etc."
+      m.route "# Routes for the source data\n  map.connect 'source_data/:id', :controller => 'source_data',\n    :action => 'show'"
+      m.route "# Ontologies\n  map.resources :ontologies"
+      m.route "# Autocomplete on URI\n  map.connect 'sources/auto_complete_for_uri', :controller => 'sources', :action => 'auto_complete_for_uri'"
+      
       # Some initialization stuff
       m.directory 'config/initializers'
       m.file "config/talia_initializer.rb", "config/initializers/talia.rb"
-      m.file "config/routes.rb", "config/routes.rb", :collision => :ask
       m.file "talia.sh", "talia.sh", :shebang => '/bin/sh', :chmod => 0755
       m.file "config/warble.rb", "config/warble.rb"
       
@@ -20,16 +28,15 @@ class TaliaBaseGenerator < Rails::Generator::Base
       m.directory 'script'
       m.file 'script/configure_talia', 'script/configure_talia', :shebang => DEFAULT_SHEBANG, :chmod => 0755
       m.file 'script/prepare_images', 'script/prepare_images', :shebang => DEFAULT_SHEBANG, :chmod => 0755
-      m.file 'script/setup_talia_backend', 'script/setup_talia_backend', :shebang => DEFAULT_SHEBANG, :chmod => 0755
       
       # The whole app shebang of files
-      files_in m, 'app'
+      m.files_in 'app'
       
       # The default ontologies
-      files_in m, 'ontologies'
+      m.files_in 'ontologies'
       
       # The whole public dir
-      files_in m, 'public'
+      m.files_in 'public'
       
       # Set up the rake tasks, only if we come from a gem
       if(Gem.source_index.find_name('talia_core').first)
@@ -40,15 +47,15 @@ class TaliaBaseGenerator < Rails::Generator::Base
       # Add the migrations
       m.directory 'db/migrate'
       m.file "migrations/constraint_migration.rb", "db/migrate/constraint_migration.rb"
-      make_migration m, "create_active_sources.rb"
-      make_migration m, "create_semantic_relations.rb"
-      make_migration m, "create_semantic_properties.rb"
-      make_migration m, "create_data_records.rb"
-      make_migration m, "create_workflows.rb"
-      make_migration m, "create_custom_templates.rb"
-      make_migration m, "upgrade_relations.rb"
-      make_migration m, "create_progress_jobs.rb"
-      make_migration m, "bj_migration.rb"
+      m.make_migration "create_active_sources.rb"
+      m.make_migration "create_semantic_relations.rb"
+      m.make_migration "create_semantic_properties.rb"
+      m.make_migration "create_data_records.rb"
+      m.make_migration "create_workflows.rb"
+      m.make_migration "create_custom_templates.rb"
+      m.make_migration "upgrade_relations.rb"
+      m.make_migration "create_progress_jobs.rb"
+      m.make_migration "bj_migration.rb"
       
       m.readme 'README'
     end

data/generators/talia_oai/talia_oai_generator.rb

@@ -0,0 +1,19 @@
+require File.dirname(__FILE__) + '/../generator_helpers'
+
+class TaliaOaiGenerator < Rails::Generator::Base
+  
+  include GeneratorHelpers
+  
+  def self_dir ; File.dirname(__FILE__) ; end
+    
+  def manifest
+    record do |m|
+      m.directory 'config/initializers'
+      m.file "oai_initializer.rb", "config/initializers/talia_oai.rb"
+      m.directory 'app/controllers'
+      m.file 'oai_controller.rb', 'app/controllers/oai_controller.rb'
+      m.route "map.resources :oai"
+    end
+  end
+
+end

data/generators/talia_oai/templates/oai_controller.rb

@@ -0,0 +1,9 @@
+class OaiController < ApplicationController
+  def index
+    # Remove controller and action from the options.  Rails adds them automatically.
+    options = params.delete_if { |k,v| %w{controller action}.include?(k) }
+    provider = TaliaOaiProvider.new
+    response =  provider.process_request(options)
+    render :text => response, :content_type => 'text/xml'
+  end
+end

data/generators/talia_oai/templates/oai_initializer.rb

@@ -0,0 +1,16 @@
+begin
+  require 'oai'
+rescue LoadError
+  puts "ERROR: You have enabled the Talia OAI interface, but the OAI library was not found."
+  puts "Please do 'gem install oai_talia' to fix this. (Gem is hosted on gemcutter.org)"
+  puts 
+  raise
+end
+
+class TaliaOaiProvider < OAI::Provider::Base
+  repository_name 'Talia OAI Interface'
+  repository_url N::LOCAL.oai.to_s
+  record_prefix 'oai:talia'
+  admin_email 'root@localhost'
+  source_model TaliaCore::Oai::ActiveSourceModel.new
+end

data/lib/custom_template.rb

@@ -1,4 +1,28 @@
 class CustomTemplate < ActiveRecord::Base
+  hobo_model # Don't put anything above this
+  
   validates_presence_of :name, :content
   validates_format_of :template_type, :with => /css|xslt/
+  
+  fields do
+    name :string
+    template_type :string
+    content :text
+  end
+  
+  def create_permitted?
+    acting_user.administrator?
+  end
+  
+  def destroy_permitted?
+    acting_user.administrator?
+  end
+  
+  def update_permitted?
+    acting_user.administrator?
+  end
+  
+  def view_permitted?(field)
+    true
+  end
 end