t2-web 0.0.5 → 0.0.6

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (66) hide show
  1. data/README +1 -1
  2. data/Rakefile +4 -4
  3. data/doc/classes/WebT2App.html +1123 -0
  4. data/doc/classes/WebT2App.src/M000001.html +18 -0
  5. data/doc/classes/WebT2App.src/M000002.html +25 -0
  6. data/doc/classes/WebT2App.src/M000003.html +22 -0
  7. data/doc/classes/WebT2App.src/M000004.html +18 -0
  8. data/doc/classes/WebT2App.src/M000005.html +18 -0
  9. data/doc/classes/WebT2App.src/M000006.html +18 -0
  10. data/doc/classes/WebT2App.src/M000007.html +18 -0
  11. data/doc/classes/WebT2App.src/M000008.html +32 -0
  12. data/doc/classes/WebT2App.src/M000009.html +27 -0
  13. data/doc/classes/WebT2App.src/M000010.html +18 -0
  14. data/doc/classes/WebT2App.src/M000011.html +21 -0
  15. data/doc/classes/WebT2App.src/M000012.html +25 -0
  16. data/doc/classes/WebT2App.src/M000013.html +22 -0
  17. data/doc/classes/WebT2App.src/M000014.html +23 -0
  18. data/doc/classes/WebT2App.src/M000015.html +32 -0
  19. data/doc/classes/WebT2App.src/M000016.html +27 -0
  20. data/doc/classes/WebT2App.src/M000017.html +18 -0
  21. data/doc/classes/WebT2App.src/M000018.html +25 -0
  22. data/doc/classes/WebT2App.src/M000019.html +22 -0
  23. data/doc/classes/WebT2App.src/M000020.html +18 -0
  24. data/doc/classes/WebT2App.src/M000021.html +18 -0
  25. data/doc/classes/WebT2App.src/M000022.html +18 -0
  26. data/doc/classes/WebT2App.src/M000023.html +18 -0
  27. data/doc/classes/WebT2App.src/M000024.html +32 -0
  28. data/doc/classes/WebT2App.src/M000025.html +27 -0
  29. data/doc/classes/WebT2App.src/M000026.html +18 -0
  30. data/doc/classes/WebT2App.src/M000027.html +21 -0
  31. data/doc/classes/WebT2App.src/M000028.html +25 -0
  32. data/doc/classes/WebT2App.src/M000029.html +22 -0
  33. data/doc/classes/WebT2App.src/M000030.html +23 -0
  34. data/doc/classes/WebT2App.src/M000031.html +32 -0
  35. data/doc/classes/WebT2App.src/M000032.html +27 -0
  36. data/doc/classes/WebT2App.src/M000033.html +18 -0
  37. data/doc/classes/WebT2App.src/M000034.html +25 -0
  38. data/doc/classes/WebT2App.src/M000035.html +22 -0
  39. data/doc/classes/WebT2App.src/M000036.html +18 -0
  40. data/doc/classes/WebT2App.src/M000037.html +18 -0
  41. data/doc/classes/WebT2App.src/M000038.html +18 -0
  42. data/doc/classes/WebT2App.src/M000039.html +18 -0
  43. data/doc/classes/WebT2App.src/M000040.html +32 -0
  44. data/doc/classes/WebT2App.src/M000041.html +27 -0
  45. data/doc/classes/WebT2App.src/M000042.html +18 -0
  46. data/doc/classes/WebT2App.src/M000043.html +25 -0
  47. data/doc/classes/WebT2App.src/M000044.html +22 -0
  48. data/doc/classes/WebT2App.src/M000045.html +18 -0
  49. data/doc/classes/WebT2App.src/M000046.html +18 -0
  50. data/doc/classes/WebT2App.src/M000047.html +18 -0
  51. data/doc/classes/WebT2App.src/M000048.html +18 -0
  52. data/doc/classes/WebT2App.src/M000049.html +32 -0
  53. data/doc/classes/WebT2App.src/M000050.html +27 -0
  54. data/doc/created.rid +1 -0
  55. data/doc/files/bin/t2_webapp_rb.html +115 -0
  56. data/doc/files/pkg/t2-web-0_0_2/bin/web_t2_service_rb.html +114 -0
  57. data/doc/files/pkg/t2-web-0_0_3/bin/t2_webapp_rb.html +115 -0
  58. data/doc/files/pkg/t2-web-0_0_3/bin/web_t2_service_rb.html +114 -0
  59. data/doc/files/pkg/t2-web-0_0_4/bin/t2_webapp_rb.html +115 -0
  60. data/doc/files/pkg/t2-web-0_0_5/bin/t2_webapp_rb.html +115 -0
  61. data/doc/fr_class_index.html +27 -0
  62. data/doc/fr_file_index.html +32 -0
  63. data/doc/fr_method_index.html +76 -0
  64. data/doc/index.html +24 -0
  65. data/doc/rdoc-style.css +208 -0
  66. metadata +71 -8
data/README CHANGED
@@ -2,7 +2,7 @@
2
2
 
3
3
 
4
4
  Authors:: Konstantinos Karasavvas
5
- Gem Version:: 0.0.5
5
+ Gem Version:: 0.0.6
6
6
  Contact:: mailto:kostas.karasavvas@nbic.nl
7
7
  Licence:: MIT (See LICENCE or http://www.opensource.org/licenses/mit-license)
8
8
  Copyright:: (c) 2010 Netherlands Bioinformatics Centre, The Netherlands
data/Rakefile CHANGED
@@ -12,21 +12,21 @@ require 'rdoc/task'
12
12
 
13
13
  spec = Gem::Specification.new do |s|
14
14
  s.name = 't2-web'
15
- s.version = '0.0.5'
15
+ s.version = '0.0.6'
16
16
  s.extra_rdoc_files = ['README', 'LICENSE', 'CHANGES']
17
- s.summary = 'WS (with libs) that generates a Web UI form for a Taverna2 workflow and then enacts it to a T2 server.'
17
+ s.summary = 'Web application that generates a Web UI form for a Taverna2 workflow, given its myExperiment id, for ease of execution. The only requirement for the user is a web browser.'
18
18
  s.description = s.summary
19
19
  s.author = 'Kostas Karasavvas'
20
20
  s.email = 'kostas.karasavvas@nbic.nl'
21
21
  s.executables = ['t2_webapp.rb']
22
- s.files = %w(LICENSE README CHANGES Rakefile) + Dir.glob("{bin,lib,spec,public,views}/**/*")
22
+ s.files = %w(LICENSE README CHANGES Rakefile) + Dir.glob("{bin,lib,doc,spec,public,views}/**/*")
23
23
  s.require_path = "lib"
24
24
  s.bindir = "bin"
25
25
  s.add_dependency 'sinatra', '~> 1.2.6'
26
26
  s.add_dependency 'haml', '~> 3.1.2'
27
27
  s.add_dependency 'rest-client', '~> 1.6.3'
28
28
  s.add_dependency 't2-server', '~> 0.6.1'
29
- s.add_dependency 'myexperiment-rest', '~> 0.3.0'
29
+ s.add_dependency 'myexperiment-rest', '~> 0.3.3'
30
30
  end
31
31
 
32
32
  Gem::PackageTask.new(spec) do |p|
@@ -0,0 +1,1123 @@
1
+ <?xml version="1.0" encoding="iso-8859-1"?>
2
+ <!DOCTYPE html
3
+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
4
+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
5
+
6
+ <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
7
+ <head>
8
+ <title>Class: WebT2App</title>
9
+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
10
+ <meta http-equiv="Content-Script-Type" content="text/javascript" />
11
+ <link rel="stylesheet" href=".././rdoc-style.css" type="text/css" media="screen" />
12
+ <script type="text/javascript">
13
+ // <![CDATA[
14
+
15
+ function popupCode( url ) {
16
+ window.open(url, "Code", "resizable=yes,scrollbars=yes,toolbar=no,status=no,height=150,width=400")
17
+ }
18
+
19
+ function toggleCode( id ) {
20
+ if ( document.getElementById )
21
+ elem = document.getElementById( id );
22
+ else if ( document.all )
23
+ elem = eval( "document.all." + id );
24
+ else
25
+ return false;
26
+
27
+ elemStyle = elem.style;
28
+
29
+ if ( elemStyle.display != "block" ) {
30
+ elemStyle.display = "block"
31
+ } else {
32
+ elemStyle.display = "none"
33
+ }
34
+
35
+ return true;
36
+ }
37
+
38
+ // Make codeblocks hidden by default
39
+ document.writeln( "<style type=\"text/css\">div.method-source-code { display: none }</style>" )
40
+
41
+ // ]]>
42
+ </script>
43
+
44
+ </head>
45
+ <body>
46
+
47
+
48
+
49
+ <div id="classHeader">
50
+ <table class="header-table">
51
+ <tr class="top-aligned-row">
52
+ <td><strong>Class</strong></td>
53
+ <td class="class-name-in-header">WebT2App</td>
54
+ </tr>
55
+ <tr class="top-aligned-row">
56
+ <td><strong>In:</strong></td>
57
+ <td>
58
+ <a href="../files/bin/t2_webapp_rb.html">
59
+ bin/t2_webapp.rb
60
+ </a>
61
+ <br />
62
+ <a href="../files/pkg/t2-web-0_0_3/bin/web_t2_service_rb.html">
63
+ pkg/t2-web-0.0.3/bin/web_t2_service.rb
64
+ </a>
65
+ <br />
66
+ <a href="../files/pkg/t2-web-0_0_3/bin/t2_webapp_rb.html">
67
+ pkg/t2-web-0.0.3/bin/t2_webapp.rb
68
+ </a>
69
+ <br />
70
+ <a href="../files/pkg/t2-web-0_0_2/bin/web_t2_service_rb.html">
71
+ pkg/t2-web-0.0.2/bin/web_t2_service.rb
72
+ </a>
73
+ <br />
74
+ <a href="../files/pkg/t2-web-0_0_4/bin/t2_webapp_rb.html">
75
+ pkg/t2-web-0.0.4/bin/t2_webapp.rb
76
+ </a>
77
+ <br />
78
+ <a href="../files/pkg/t2-web-0_0_5/bin/t2_webapp_rb.html">
79
+ pkg/t2-web-0.0.5/bin/t2_webapp.rb
80
+ </a>
81
+ <br />
82
+ </td>
83
+ </tr>
84
+
85
+ <tr class="top-aligned-row">
86
+ <td><strong>Parent:</strong></td>
87
+ <td>
88
+ Sinatra::Base
89
+ </td>
90
+ </tr>
91
+ </table>
92
+ </div>
93
+ <!-- banner header -->
94
+
95
+ <div id="bodyContent">
96
+
97
+
98
+
99
+ <div id="contextContent">
100
+
101
+ <div id="description">
102
+ <p>
103
+ require &quot;web-t2&quot; TODO: move whole of <a
104
+ href="WebT2App.html">WebT2App</a> in lib
105
+ </p>
106
+
107
+ </div>
108
+
109
+
110
+ </div>
111
+
112
+ <div id="method-list">
113
+ <h3 class="section-bar">Methods</h3>
114
+
115
+ <div class="name-list">
116
+ <a href="#M000018">chomp_last_newline</a>&nbsp;&nbsp;
117
+ <a href="#M000002">chomp_last_newline</a>&nbsp;&nbsp;
118
+ <a href="#M000043">chomp_last_newline</a>&nbsp;&nbsp;
119
+ <a href="#M000028">chomp_last_newline</a>&nbsp;&nbsp;
120
+ <a href="#M000012">chomp_last_newline</a>&nbsp;&nbsp;
121
+ <a href="#M000034">chomp_last_newline</a>&nbsp;&nbsp;
122
+ <a href="#M000031">generate_data_navigation_frame</a>&nbsp;&nbsp;
123
+ <a href="#M000008">generate_data_navigation_frame</a>&nbsp;&nbsp;
124
+ <a href="#M000040">generate_data_navigation_frame</a>&nbsp;&nbsp;
125
+ <a href="#M000049">generate_data_navigation_frame</a>&nbsp;&nbsp;
126
+ <a href="#M000015">generate_data_navigation_frame</a>&nbsp;&nbsp;
127
+ <a href="#M000024">generate_data_navigation_frame</a>&nbsp;&nbsp;
128
+ <a href="#M000020">generate_header_frame</a>&nbsp;&nbsp;
129
+ <a href="#M000014">generate_header_frame</a>&nbsp;&nbsp;
130
+ <a href="#M000036">generate_header_frame</a>&nbsp;&nbsp;
131
+ <a href="#M000004">generate_header_frame</a>&nbsp;&nbsp;
132
+ <a href="#M000030">generate_header_frame</a>&nbsp;&nbsp;
133
+ <a href="#M000045">generate_header_frame</a>&nbsp;&nbsp;
134
+ <a href="#M000046">generate_header_table</a>&nbsp;&nbsp;
135
+ <a href="#M000005">generate_header_table</a>&nbsp;&nbsp;
136
+ <a href="#M000021">generate_header_table</a>&nbsp;&nbsp;
137
+ <a href="#M000037">generate_header_table</a>&nbsp;&nbsp;
138
+ <a href="#M000050">generate_html_result</a>&nbsp;&nbsp;
139
+ <a href="#M000032">generate_html_result</a>&nbsp;&nbsp;
140
+ <a href="#M000025">generate_html_result</a>&nbsp;&nbsp;
141
+ <a href="#M000009">generate_html_result</a>&nbsp;&nbsp;
142
+ <a href="#M000041">generate_html_result</a>&nbsp;&nbsp;
143
+ <a href="#M000016">generate_html_result</a>&nbsp;&nbsp;
144
+ <a href="#M000038">generate_label_tooltip</a>&nbsp;&nbsp;
145
+ <a href="#M000022">generate_label_tooltip</a>&nbsp;&nbsp;
146
+ <a href="#M000047">generate_label_tooltip</a>&nbsp;&nbsp;
147
+ <a href="#M000006">generate_label_tooltip</a>&nbsp;&nbsp;
148
+ <a href="#M000007">generate_textarea_tooltip</a>&nbsp;&nbsp;
149
+ <a href="#M000048">generate_textarea_tooltip</a>&nbsp;&nbsp;
150
+ <a href="#M000039">generate_textarea_tooltip</a>&nbsp;&nbsp;
151
+ <a href="#M000023">generate_textarea_tooltip</a>&nbsp;&nbsp;
152
+ <a href="#M000035">get_url_from_wid</a>&nbsp;&nbsp;
153
+ <a href="#M000029">get_url_from_wid</a>&nbsp;&nbsp;
154
+ <a href="#M000044">get_url_from_wid</a>&nbsp;&nbsp;
155
+ <a href="#M000019">get_url_from_wid</a>&nbsp;&nbsp;
156
+ <a href="#M000003">get_url_from_wid</a>&nbsp;&nbsp;
157
+ <a href="#M000013">get_url_from_wid</a>&nbsp;&nbsp;
158
+ <a href="#M000011">html_sanitise</a>&nbsp;&nbsp;
159
+ <a href="#M000027">html_sanitise</a>&nbsp;&nbsp;
160
+ <a href="#M000026">t2_library_sanitize</a>&nbsp;&nbsp;
161
+ <a href="#M000033">t2_library_sanitize</a>&nbsp;&nbsp;
162
+ <a href="#M000042">t2_library_sanitize</a>&nbsp;&nbsp;
163
+ <a href="#M000017">t2_library_sanitize</a>&nbsp;&nbsp;
164
+ <a href="#M000010">t2_library_sanitize</a>&nbsp;&nbsp;
165
+ <a href="#M000001">t2_library_sanitize</a>&nbsp;&nbsp;
166
+ </div>
167
+ </div>
168
+
169
+ </div>
170
+
171
+
172
+ <!-- if includes -->
173
+
174
+ <div id="section">
175
+
176
+
177
+ <div id="constants-list">
178
+ <h3 class="section-bar">Constants</h3>
179
+
180
+ <div class="name-list">
181
+ <table summary="Constants">
182
+ <tr class="top-aligned-row context-row">
183
+ <td class="context-item-name">WEB_APP_NAME</td>
184
+ <td>=</td>
185
+ <td class="context-item-value">&quot;t2web&quot;</td>
186
+ </tr>
187
+ <tr class="top-aligned-row context-row">
188
+ <td class="context-item-name">WEB_APP_NAME</td>
189
+ <td>=</td>
190
+ <td class="context-item-value">&quot;t2web&quot;</td>
191
+ </tr>
192
+ <tr class="top-aligned-row context-row">
193
+ <td class="context-item-name">WEB_APP_NAME</td>
194
+ <td>=</td>
195
+ <td class="context-item-value">&quot;t2web&quot;</td>
196
+ </tr>
197
+ <tr class="top-aligned-row context-row">
198
+ <td class="context-item-name">WEB_APP_NAME</td>
199
+ <td>=</td>
200
+ <td class="context-item-value">&quot;t2web&quot;</td>
201
+ </tr>
202
+ <tr class="top-aligned-row context-row">
203
+ <td class="context-item-name">WEB_APP_NAME</td>
204
+ <td>=</td>
205
+ <td class="context-item-value">&quot;t2web&quot;</td>
206
+ </tr>
207
+ <tr class="top-aligned-row context-row">
208
+ <td class="context-item-name">WEB_APP_NAME</td>
209
+ <td>=</td>
210
+ <td class="context-item-value">&quot;t2web&quot;</td>
211
+ </tr>
212
+ </table>
213
+ </div>
214
+ </div>
215
+
216
+
217
+
218
+
219
+
220
+
221
+ <!-- if method_list -->
222
+ <div id="methods">
223
+ <h3 class="section-bar">Public Instance methods</h3>
224
+
225
+ <div id="method-M000018" class="method-detail">
226
+ <a name="M000018"></a>
227
+
228
+ <div class="method-heading">
229
+ <a href="WebT2App.src/M000018.html" target="Code" class="method-signature"
230
+ onclick="popupCode('WebT2App.src/M000018.html');return false;">
231
+ <span class="method-name">chomp_last_newline</span><span class="method-args">(file)</span>
232
+ </a>
233
+ </div>
234
+
235
+ <div class="method-description">
236
+ <p>
237
+ Deletes last new line of file if it exists! It is needed for t2 workflows
238
+ that do not sanitize properly, i.e. via a user-provided beanshell script
239
+ </p>
240
+ </div>
241
+ </div>
242
+
243
+ <div id="method-M000002" class="method-detail">
244
+ <a name="M000002"></a>
245
+
246
+ <div class="method-heading">
247
+ <a href="WebT2App.src/M000002.html" target="Code" class="method-signature"
248
+ onclick="popupCode('WebT2App.src/M000002.html');return false;">
249
+ <span class="method-name">chomp_last_newline</span><span class="method-args">(file)</span>
250
+ </a>
251
+ </div>
252
+
253
+ <div class="method-description">
254
+ <p>
255
+ Deletes last new line of file if it exists! It is needed for t2 workflows
256
+ that do not sanitize properly, i.e. via a user-provided beanshell script
257
+ </p>
258
+ </div>
259
+ </div>
260
+
261
+ <div id="method-M000043" class="method-detail">
262
+ <a name="M000043"></a>
263
+
264
+ <div class="method-heading">
265
+ <a href="WebT2App.src/M000043.html" target="Code" class="method-signature"
266
+ onclick="popupCode('WebT2App.src/M000043.html');return false;">
267
+ <span class="method-name">chomp_last_newline</span><span class="method-args">(file)</span>
268
+ </a>
269
+ </div>
270
+
271
+ <div class="method-description">
272
+ <p>
273
+ Deletes last new line of file if it exists! It is needed for t2 workflows
274
+ that do not sanitize properly, i.e. via a user-provided beanshell script
275
+ </p>
276
+ </div>
277
+ </div>
278
+
279
+ <div id="method-M000028" class="method-detail">
280
+ <a name="M000028"></a>
281
+
282
+ <div class="method-heading">
283
+ <a href="WebT2App.src/M000028.html" target="Code" class="method-signature"
284
+ onclick="popupCode('WebT2App.src/M000028.html');return false;">
285
+ <span class="method-name">chomp_last_newline</span><span class="method-args">(file)</span>
286
+ </a>
287
+ </div>
288
+
289
+ <div class="method-description">
290
+ <p>
291
+ Deletes last new line of file if it exists! It is needed for t2 workflows
292
+ that do not sanitize properly, i.e. via a user-provided beanshell script
293
+ </p>
294
+ </div>
295
+ </div>
296
+
297
+ <div id="method-M000012" class="method-detail">
298
+ <a name="M000012"></a>
299
+
300
+ <div class="method-heading">
301
+ <a href="WebT2App.src/M000012.html" target="Code" class="method-signature"
302
+ onclick="popupCode('WebT2App.src/M000012.html');return false;">
303
+ <span class="method-name">chomp_last_newline</span><span class="method-args">(file)</span>
304
+ </a>
305
+ </div>
306
+
307
+ <div class="method-description">
308
+ <p>
309
+ Deletes last new line of file if it exists! It is needed for t2 workflows
310
+ that do not sanitize properly, i.e. via a user-provided beanshell script
311
+ </p>
312
+ </div>
313
+ </div>
314
+
315
+ <div id="method-M000034" class="method-detail">
316
+ <a name="M000034"></a>
317
+
318
+ <div class="method-heading">
319
+ <a href="WebT2App.src/M000034.html" target="Code" class="method-signature"
320
+ onclick="popupCode('WebT2App.src/M000034.html');return false;">
321
+ <span class="method-name">chomp_last_newline</span><span class="method-args">(file)</span>
322
+ </a>
323
+ </div>
324
+
325
+ <div class="method-description">
326
+ <p>
327
+ Deletes last new line of file if it exists! It is needed for t2 workflows
328
+ that do not sanitize properly, i.e. via a user-provided beanshell script
329
+ </p>
330
+ </div>
331
+ </div>
332
+
333
+ <div id="method-M000031" class="method-detail">
334
+ <a name="M000031"></a>
335
+
336
+ <div class="method-heading">
337
+ <a href="WebT2App.src/M000031.html" target="Code" class="method-signature"
338
+ onclick="popupCode('WebT2App.src/M000031.html');return false;">
339
+ <span class="method-name">generate_data_navigation_frame</span><span class="method-args">(my_exp_wkf, uuid, wid, wkf_version, t2_server, finished_execution)</span>
340
+ </a>
341
+ </div>
342
+
343
+ <div class="method-description">
344
+ <p>
345
+ Generates the contents of the data-navigation frame
346
+ </p>
347
+ </div>
348
+ </div>
349
+
350
+ <div id="method-M000008" class="method-detail">
351
+ <a name="M000008"></a>
352
+
353
+ <div class="method-heading">
354
+ <a href="WebT2App.src/M000008.html" target="Code" class="method-signature"
355
+ onclick="popupCode('WebT2App.src/M000008.html');return false;">
356
+ <span class="method-name">generate_data_navigation_frame</span><span class="method-args">(my_exp_wkf, uuid, wid, wkf_version, t2_server, finished_execution)</span>
357
+ </a>
358
+ </div>
359
+
360
+ <div class="method-description">
361
+ <p>
362
+ Generates the contents of the data-navigation frame
363
+ </p>
364
+ </div>
365
+ </div>
366
+
367
+ <div id="method-M000040" class="method-detail">
368
+ <a name="M000040"></a>
369
+
370
+ <div class="method-heading">
371
+ <a href="WebT2App.src/M000040.html" target="Code" class="method-signature"
372
+ onclick="popupCode('WebT2App.src/M000040.html');return false;">
373
+ <span class="method-name">generate_data_navigation_frame</span><span class="method-args">(my_exp_wkf, uuid, wid, wkf_version, t2_server, finished_execution)</span>
374
+ </a>
375
+ </div>
376
+
377
+ <div class="method-description">
378
+ <p>
379
+ Generates the contents of the data-navigation frame
380
+ </p>
381
+ </div>
382
+ </div>
383
+
384
+ <div id="method-M000049" class="method-detail">
385
+ <a name="M000049"></a>
386
+
387
+ <div class="method-heading">
388
+ <a href="WebT2App.src/M000049.html" target="Code" class="method-signature"
389
+ onclick="popupCode('WebT2App.src/M000049.html');return false;">
390
+ <span class="method-name">generate_data_navigation_frame</span><span class="method-args">(my_exp_wkf, uuid, wid, wkf_version, t2_server, finished_execution)</span>
391
+ </a>
392
+ </div>
393
+
394
+ <div class="method-description">
395
+ <p>
396
+ Generates the contents of the data-navigation frame
397
+ </p>
398
+ </div>
399
+ </div>
400
+
401
+ <div id="method-M000015" class="method-detail">
402
+ <a name="M000015"></a>
403
+
404
+ <div class="method-heading">
405
+ <a href="WebT2App.src/M000015.html" target="Code" class="method-signature"
406
+ onclick="popupCode('WebT2App.src/M000015.html');return false;">
407
+ <span class="method-name">generate_data_navigation_frame</span><span class="method-args">(my_exp_wkf, uuid, wid, wkf_version, t2_server, finished_execution)</span>
408
+ </a>
409
+ </div>
410
+
411
+ <div class="method-description">
412
+ <p>
413
+ Generates the contents of the data-navigation frame
414
+ </p>
415
+ </div>
416
+ </div>
417
+
418
+ <div id="method-M000024" class="method-detail">
419
+ <a name="M000024"></a>
420
+
421
+ <div class="method-heading">
422
+ <a href="WebT2App.src/M000024.html" target="Code" class="method-signature"
423
+ onclick="popupCode('WebT2App.src/M000024.html');return false;">
424
+ <span class="method-name">generate_data_navigation_frame</span><span class="method-args">(my_exp_wkf, uuid, wid, wkf_version, t2_server, finished_execution)</span>
425
+ </a>
426
+ </div>
427
+
428
+ <div class="method-description">
429
+ <p>
430
+ Generates the contents of the data-navigation frame
431
+ </p>
432
+ </div>
433
+ </div>
434
+
435
+ <div id="method-M000020" class="method-detail">
436
+ <a name="M000020"></a>
437
+
438
+ <div class="method-heading">
439
+ <a href="WebT2App.src/M000020.html" target="Code" class="method-signature"
440
+ onclick="popupCode('WebT2App.src/M000020.html');return false;">
441
+ <span class="method-name">generate_header_frame</span><span class="method-args">(my_exp_wkf, my_exp_usr)</span>
442
+ </a>
443
+ </div>
444
+
445
+ <div class="method-description">
446
+ <p>
447
+ Generates the contents of the header frame
448
+ </p>
449
+ </div>
450
+ </div>
451
+
452
+ <div id="method-M000014" class="method-detail">
453
+ <a name="M000014"></a>
454
+
455
+ <div class="method-heading">
456
+ <a href="WebT2App.src/M000014.html" target="Code" class="method-signature"
457
+ onclick="popupCode('WebT2App.src/M000014.html');return false;">
458
+ <span class="method-name">generate_header_frame</span><span class="method-args">(my_exp_wkf)</span>
459
+ </a>
460
+ </div>
461
+
462
+ <div class="method-description">
463
+ <p>
464
+ Generates the contents of the header frame
465
+ </p>
466
+ </div>
467
+ </div>
468
+
469
+ <div id="method-M000036" class="method-detail">
470
+ <a name="M000036"></a>
471
+
472
+ <div class="method-heading">
473
+ <a href="WebT2App.src/M000036.html" target="Code" class="method-signature"
474
+ onclick="popupCode('WebT2App.src/M000036.html');return false;">
475
+ <span class="method-name">generate_header_frame</span><span class="method-args">(my_exp_wkf, my_exp_usr)</span>
476
+ </a>
477
+ </div>
478
+
479
+ <div class="method-description">
480
+ <p>
481
+ Generates the contents of the header frame
482
+ </p>
483
+ </div>
484
+ </div>
485
+
486
+ <div id="method-M000004" class="method-detail">
487
+ <a name="M000004"></a>
488
+
489
+ <div class="method-heading">
490
+ <a href="WebT2App.src/M000004.html" target="Code" class="method-signature"
491
+ onclick="popupCode('WebT2App.src/M000004.html');return false;">
492
+ <span class="method-name">generate_header_frame</span><span class="method-args">(my_exp_wkf, my_exp_usr)</span>
493
+ </a>
494
+ </div>
495
+
496
+ <div class="method-description">
497
+ <p>
498
+ Generates the contents of the header frame
499
+ </p>
500
+ </div>
501
+ </div>
502
+
503
+ <div id="method-M000030" class="method-detail">
504
+ <a name="M000030"></a>
505
+
506
+ <div class="method-heading">
507
+ <a href="WebT2App.src/M000030.html" target="Code" class="method-signature"
508
+ onclick="popupCode('WebT2App.src/M000030.html');return false;">
509
+ <span class="method-name">generate_header_frame</span><span class="method-args">(my_exp_wkf)</span>
510
+ </a>
511
+ </div>
512
+
513
+ <div class="method-description">
514
+ <p>
515
+ Generates the contents of the header frame
516
+ </p>
517
+ </div>
518
+ </div>
519
+
520
+ <div id="method-M000045" class="method-detail">
521
+ <a name="M000045"></a>
522
+
523
+ <div class="method-heading">
524
+ <a href="WebT2App.src/M000045.html" target="Code" class="method-signature"
525
+ onclick="popupCode('WebT2App.src/M000045.html');return false;">
526
+ <span class="method-name">generate_header_frame</span><span class="method-args">(my_exp_wkf, my_exp_usr)</span>
527
+ </a>
528
+ </div>
529
+
530
+ <div class="method-description">
531
+ <p>
532
+ Generates the contents of the header frame
533
+ </p>
534
+ </div>
535
+ </div>
536
+
537
+ <div id="method-M000046" class="method-detail">
538
+ <a name="M000046"></a>
539
+
540
+ <div class="method-heading">
541
+ <a href="WebT2App.src/M000046.html" target="Code" class="method-signature"
542
+ onclick="popupCode('WebT2App.src/M000046.html');return false;">
543
+ <span class="method-name">generate_header_table</span><span class="method-args">(my_exp_wkf, my_exp_usr)</span>
544
+ </a>
545
+ </div>
546
+
547
+ <div class="method-description">
548
+ <p>
549
+ Generates the contents of the header frame
550
+ </p>
551
+ </div>
552
+ </div>
553
+
554
+ <div id="method-M000005" class="method-detail">
555
+ <a name="M000005"></a>
556
+
557
+ <div class="method-heading">
558
+ <a href="WebT2App.src/M000005.html" target="Code" class="method-signature"
559
+ onclick="popupCode('WebT2App.src/M000005.html');return false;">
560
+ <span class="method-name">generate_header_table</span><span class="method-args">(my_exp_wkf, my_exp_usr)</span>
561
+ </a>
562
+ </div>
563
+
564
+ <div class="method-description">
565
+ <p>
566
+ Generates the contents of the header frame
567
+ </p>
568
+ </div>
569
+ </div>
570
+
571
+ <div id="method-M000021" class="method-detail">
572
+ <a name="M000021"></a>
573
+
574
+ <div class="method-heading">
575
+ <a href="WebT2App.src/M000021.html" target="Code" class="method-signature"
576
+ onclick="popupCode('WebT2App.src/M000021.html');return false;">
577
+ <span class="method-name">generate_header_table</span><span class="method-args">(my_exp_wkf, my_exp_usr)</span>
578
+ </a>
579
+ </div>
580
+
581
+ <div class="method-description">
582
+ <p>
583
+ Generates the contents of the header frame
584
+ </p>
585
+ </div>
586
+ </div>
587
+
588
+ <div id="method-M000037" class="method-detail">
589
+ <a name="M000037"></a>
590
+
591
+ <div class="method-heading">
592
+ <a href="WebT2App.src/M000037.html" target="Code" class="method-signature"
593
+ onclick="popupCode('WebT2App.src/M000037.html');return false;">
594
+ <span class="method-name">generate_header_table</span><span class="method-args">(my_exp_wkf, my_exp_usr)</span>
595
+ </a>
596
+ </div>
597
+
598
+ <div class="method-description">
599
+ <p>
600
+ Generates the contents of the header frame
601
+ </p>
602
+ </div>
603
+ </div>
604
+
605
+ <div id="method-M000050" class="method-detail">
606
+ <a name="M000050"></a>
607
+
608
+ <div class="method-heading">
609
+ <a href="WebT2App.src/M000050.html" target="Code" class="method-signature"
610
+ onclick="popupCode('WebT2App.src/M000050.html');return false;">
611
+ <span class="method-name">generate_html_result</span><span class="method-args">(data)</span>
612
+ </a>
613
+ </div>
614
+
615
+ <div class="method-description">
616
+ <p>
617
+ Check type of data and generate appropriate html for that result!
618
+ </p>
619
+ </div>
620
+ </div>
621
+
622
+ <div id="method-M000032" class="method-detail">
623
+ <a name="M000032"></a>
624
+
625
+ <div class="method-heading">
626
+ <a href="WebT2App.src/M000032.html" target="Code" class="method-signature"
627
+ onclick="popupCode('WebT2App.src/M000032.html');return false;">
628
+ <span class="method-name">generate_html_result</span><span class="method-args">(data)</span>
629
+ </a>
630
+ </div>
631
+
632
+ <div class="method-description">
633
+ <p>
634
+ Check type of data and generate appropriate html for that result!
635
+ </p>
636
+ </div>
637
+ </div>
638
+
639
+ <div id="method-M000025" class="method-detail">
640
+ <a name="M000025"></a>
641
+
642
+ <div class="method-heading">
643
+ <a href="WebT2App.src/M000025.html" target="Code" class="method-signature"
644
+ onclick="popupCode('WebT2App.src/M000025.html');return false;">
645
+ <span class="method-name">generate_html_result</span><span class="method-args">(data)</span>
646
+ </a>
647
+ </div>
648
+
649
+ <div class="method-description">
650
+ <p>
651
+ Check type of data and generate appropriate html for that result!
652
+ </p>
653
+ </div>
654
+ </div>
655
+
656
+ <div id="method-M000009" class="method-detail">
657
+ <a name="M000009"></a>
658
+
659
+ <div class="method-heading">
660
+ <a href="WebT2App.src/M000009.html" target="Code" class="method-signature"
661
+ onclick="popupCode('WebT2App.src/M000009.html');return false;">
662
+ <span class="method-name">generate_html_result</span><span class="method-args">(data)</span>
663
+ </a>
664
+ </div>
665
+
666
+ <div class="method-description">
667
+ <p>
668
+ Check type of data and generate appropriate html for that result!
669
+ </p>
670
+ </div>
671
+ </div>
672
+
673
+ <div id="method-M000041" class="method-detail">
674
+ <a name="M000041"></a>
675
+
676
+ <div class="method-heading">
677
+ <a href="WebT2App.src/M000041.html" target="Code" class="method-signature"
678
+ onclick="popupCode('WebT2App.src/M000041.html');return false;">
679
+ <span class="method-name">generate_html_result</span><span class="method-args">(data)</span>
680
+ </a>
681
+ </div>
682
+
683
+ <div class="method-description">
684
+ <p>
685
+ Check type of data and generate appropriate html for that result!
686
+ </p>
687
+ </div>
688
+ </div>
689
+
690
+ <div id="method-M000016" class="method-detail">
691
+ <a name="M000016"></a>
692
+
693
+ <div class="method-heading">
694
+ <a href="WebT2App.src/M000016.html" target="Code" class="method-signature"
695
+ onclick="popupCode('WebT2App.src/M000016.html');return false;">
696
+ <span class="method-name">generate_html_result</span><span class="method-args">(data)</span>
697
+ </a>
698
+ </div>
699
+
700
+ <div class="method-description">
701
+ <p>
702
+ Check type of data and generate appropriate html for that result!
703
+ </p>
704
+ </div>
705
+ </div>
706
+
707
+ <div id="method-M000038" class="method-detail">
708
+ <a name="M000038"></a>
709
+
710
+ <div class="method-heading">
711
+ <a href="WebT2App.src/M000038.html" target="Code" class="method-signature"
712
+ onclick="popupCode('WebT2App.src/M000038.html');return false;">
713
+ <span class="method-name">generate_label_tooltip</span><span class="method-args">(input)</span>
714
+ </a>
715
+ </div>
716
+
717
+ <div class="method-description">
718
+ <p>
719
+ Generates tooltip html text for descriptions
720
+ </p>
721
+ </div>
722
+ </div>
723
+
724
+ <div id="method-M000022" class="method-detail">
725
+ <a name="M000022"></a>
726
+
727
+ <div class="method-heading">
728
+ <a href="WebT2App.src/M000022.html" target="Code" class="method-signature"
729
+ onclick="popupCode('WebT2App.src/M000022.html');return false;">
730
+ <span class="method-name">generate_label_tooltip</span><span class="method-args">(input)</span>
731
+ </a>
732
+ </div>
733
+
734
+ <div class="method-description">
735
+ <p>
736
+ Generates tooltip html text for descriptions
737
+ </p>
738
+ </div>
739
+ </div>
740
+
741
+ <div id="method-M000047" class="method-detail">
742
+ <a name="M000047"></a>
743
+
744
+ <div class="method-heading">
745
+ <a href="WebT2App.src/M000047.html" target="Code" class="method-signature"
746
+ onclick="popupCode('WebT2App.src/M000047.html');return false;">
747
+ <span class="method-name">generate_label_tooltip</span><span class="method-args">(input)</span>
748
+ </a>
749
+ </div>
750
+
751
+ <div class="method-description">
752
+ <p>
753
+ Generates tooltip html text for descriptions
754
+ </p>
755
+ </div>
756
+ </div>
757
+
758
+ <div id="method-M000006" class="method-detail">
759
+ <a name="M000006"></a>
760
+
761
+ <div class="method-heading">
762
+ <a href="WebT2App.src/M000006.html" target="Code" class="method-signature"
763
+ onclick="popupCode('WebT2App.src/M000006.html');return false;">
764
+ <span class="method-name">generate_label_tooltip</span><span class="method-args">(input)</span>
765
+ </a>
766
+ </div>
767
+
768
+ <div class="method-description">
769
+ <p>
770
+ Generates tooltip html text for descriptions
771
+ </p>
772
+ </div>
773
+ </div>
774
+
775
+ <div id="method-M000007" class="method-detail">
776
+ <a name="M000007"></a>
777
+
778
+ <div class="method-heading">
779
+ <a href="WebT2App.src/M000007.html" target="Code" class="method-signature"
780
+ onclick="popupCode('WebT2App.src/M000007.html');return false;">
781
+ <span class="method-name">generate_textarea_tooltip</span><span class="method-args">(input)</span>
782
+ </a>
783
+ </div>
784
+
785
+ <div class="method-description">
786
+ <p>
787
+ Generates tooltip html text for textarea example
788
+ </p>
789
+ </div>
790
+ </div>
791
+
792
+ <div id="method-M000048" class="method-detail">
793
+ <a name="M000048"></a>
794
+
795
+ <div class="method-heading">
796
+ <a href="WebT2App.src/M000048.html" target="Code" class="method-signature"
797
+ onclick="popupCode('WebT2App.src/M000048.html');return false;">
798
+ <span class="method-name">generate_textarea_tooltip</span><span class="method-args">(input)</span>
799
+ </a>
800
+ </div>
801
+
802
+ <div class="method-description">
803
+ <p>
804
+ Generates tooltip html text for textarea example
805
+ </p>
806
+ </div>
807
+ </div>
808
+
809
+ <div id="method-M000039" class="method-detail">
810
+ <a name="M000039"></a>
811
+
812
+ <div class="method-heading">
813
+ <a href="WebT2App.src/M000039.html" target="Code" class="method-signature"
814
+ onclick="popupCode('WebT2App.src/M000039.html');return false;">
815
+ <span class="method-name">generate_textarea_tooltip</span><span class="method-args">(input)</span>
816
+ </a>
817
+ </div>
818
+
819
+ <div class="method-description">
820
+ <p>
821
+ Generates tooltip html text for textarea example
822
+ </p>
823
+ </div>
824
+ </div>
825
+
826
+ <div id="method-M000023" class="method-detail">
827
+ <a name="M000023"></a>
828
+
829
+ <div class="method-heading">
830
+ <a href="WebT2App.src/M000023.html" target="Code" class="method-signature"
831
+ onclick="popupCode('WebT2App.src/M000023.html');return false;">
832
+ <span class="method-name">generate_textarea_tooltip</span><span class="method-args">(input)</span>
833
+ </a>
834
+ </div>
835
+
836
+ <div class="method-description">
837
+ <p>
838
+ Generates tooltip html text for textarea example
839
+ </p>
840
+ </div>
841
+ </div>
842
+
843
+ <div id="method-M000035" class="method-detail">
844
+ <a name="M000035"></a>
845
+
846
+ <div class="method-heading">
847
+ <a href="WebT2App.src/M000035.html" target="Code" class="method-signature"
848
+ onclick="popupCode('WebT2App.src/M000035.html');return false;">
849
+ <span class="method-name">get_url_from_wid</span><span class="method-args">(wid, wkf_version)</span>
850
+ </a>
851
+ </div>
852
+
853
+ <div class="method-description">
854
+ <p>
855
+ Construct the complete or partial URL as MyExperimentRest lib expects it
856
+ TODO: Maybe update myExperimentREST lib to accept only wid and wkf_version
857
+ Minor for now
858
+ </p>
859
+ </div>
860
+ </div>
861
+
862
+ <div id="method-M000029" class="method-detail">
863
+ <a name="M000029"></a>
864
+
865
+ <div class="method-heading">
866
+ <a href="WebT2App.src/M000029.html" target="Code" class="method-signature"
867
+ onclick="popupCode('WebT2App.src/M000029.html');return false;">
868
+ <span class="method-name">get_url_from_wid</span><span class="method-args">(wid, wkf_version)</span>
869
+ </a>
870
+ </div>
871
+
872
+ <div class="method-description">
873
+ <p>
874
+ Construct the complete or partial URL as MyExperimentRest lib expects it
875
+ TODO: Maybe update myExperimentRest lib to accept only wid and wkf_version
876
+ Minor for now
877
+ </p>
878
+ </div>
879
+ </div>
880
+
881
+ <div id="method-M000044" class="method-detail">
882
+ <a name="M000044"></a>
883
+
884
+ <div class="method-heading">
885
+ <a href="WebT2App.src/M000044.html" target="Code" class="method-signature"
886
+ onclick="popupCode('WebT2App.src/M000044.html');return false;">
887
+ <span class="method-name">get_url_from_wid</span><span class="method-args">(wid, wkf_version)</span>
888
+ </a>
889
+ </div>
890
+
891
+ <div class="method-description">
892
+ <p>
893
+ Construct the complete or partial URL as MyExperimentRest lib expects it
894
+ TODO: Maybe update myExperimentREST lib to accept only wid and wkf_version
895
+ Minor for now
896
+ </p>
897
+ </div>
898
+ </div>
899
+
900
+ <div id="method-M000019" class="method-detail">
901
+ <a name="M000019"></a>
902
+
903
+ <div class="method-heading">
904
+ <a href="WebT2App.src/M000019.html" target="Code" class="method-signature"
905
+ onclick="popupCode('WebT2App.src/M000019.html');return false;">
906
+ <span class="method-name">get_url_from_wid</span><span class="method-args">(wid, wkf_version)</span>
907
+ </a>
908
+ </div>
909
+
910
+ <div class="method-description">
911
+ <p>
912
+ Construct the complete or partial URL as MyExperimentRest lib expects it
913
+ TODO: Maybe update myExperimentREST lib to accept only wid and wkf_version
914
+ Minor for now
915
+ </p>
916
+ </div>
917
+ </div>
918
+
919
+ <div id="method-M000003" class="method-detail">
920
+ <a name="M000003"></a>
921
+
922
+ <div class="method-heading">
923
+ <a href="WebT2App.src/M000003.html" target="Code" class="method-signature"
924
+ onclick="popupCode('WebT2App.src/M000003.html');return false;">
925
+ <span class="method-name">get_url_from_wid</span><span class="method-args">(wid, wkf_version)</span>
926
+ </a>
927
+ </div>
928
+
929
+ <div class="method-description">
930
+ <p>
931
+ Construct the complete or partial URL as MyExperimentRest lib expects it
932
+ TODO: Maybe update myExperimentREST lib to accept only wid and wkf_version
933
+ Minor for now
934
+ </p>
935
+ </div>
936
+ </div>
937
+
938
+ <div id="method-M000013" class="method-detail">
939
+ <a name="M000013"></a>
940
+
941
+ <div class="method-heading">
942
+ <a href="WebT2App.src/M000013.html" target="Code" class="method-signature"
943
+ onclick="popupCode('WebT2App.src/M000013.html');return false;">
944
+ <span class="method-name">get_url_from_wid</span><span class="method-args">(wid, wkf_version)</span>
945
+ </a>
946
+ </div>
947
+
948
+ <div class="method-description">
949
+ <p>
950
+ Construct the complete or partial URL as MyExperimentRest lib expects it
951
+ TODO: Maybe update myExperimentRest lib to accept only wid and wkf_version
952
+ Minor for now
953
+ </p>
954
+ </div>
955
+ </div>
956
+
957
+ <div id="method-M000011" class="method-detail">
958
+ <a name="M000011"></a>
959
+
960
+ <div class="method-heading">
961
+ <a href="WebT2App.src/M000011.html" target="Code" class="method-signature"
962
+ onclick="popupCode('WebT2App.src/M000011.html');return false;">
963
+ <span class="method-name">html_sanitise</span><span class="method-args">(string)</span>
964
+ </a>
965
+ </div>
966
+
967
+ <div class="method-description">
968
+ <p>
969
+ used by haml code to place default values in textareas, etc.
970
+ </p>
971
+ </div>
972
+ </div>
973
+
974
+ <div id="method-M000027" class="method-detail">
975
+ <a name="M000027"></a>
976
+
977
+ <div class="method-heading">
978
+ <a href="WebT2App.src/M000027.html" target="Code" class="method-signature"
979
+ onclick="popupCode('WebT2App.src/M000027.html');return false;">
980
+ <span class="method-name">html_sanitise</span><span class="method-args">(string)</span>
981
+ </a>
982
+ </div>
983
+
984
+ <div class="method-description">
985
+ <p>
986
+ used by haml code to place default values in textareas, etc.
987
+ </p>
988
+ </div>
989
+ </div>
990
+
991
+ <div id="method-M000026" class="method-detail">
992
+ <a name="M000026"></a>
993
+
994
+ <div class="method-heading">
995
+ <a href="WebT2App.src/M000026.html" target="Code" class="method-signature"
996
+ onclick="popupCode('WebT2App.src/M000026.html');return false;">
997
+ <span class="method-name">t2_library_sanitize</span><span class="method-args">(string)</span>
998
+ </a>
999
+ </div>
1000
+
1001
+ <div class="method-description">
1002
+ <p>
1003
+ Used before we sent the workflow inputs to the taverna server. Just
1004
+ converts double quotations to single ones. That is because the t2-server
1005
+ library is confused with double quotes and apparently it is not easy to
1006
+ fix.
1007
+ </p>
1008
+ </div>
1009
+ </div>
1010
+
1011
+ <div id="method-M000033" class="method-detail">
1012
+ <a name="M000033"></a>
1013
+
1014
+ <div class="method-heading">
1015
+ <a href="WebT2App.src/M000033.html" target="Code" class="method-signature"
1016
+ onclick="popupCode('WebT2App.src/M000033.html');return false;">
1017
+ <span class="method-name">t2_library_sanitize</span><span class="method-args">(string)</span>
1018
+ </a>
1019
+ </div>
1020
+
1021
+ <div class="method-description">
1022
+ <p>
1023
+ Used before we sent the workflow inputs to the taverna server. Just
1024
+ converts double quotations to single ones. That is because the t2-server
1025
+ library is confused with double quotes and apparently it is not easy to
1026
+ fix.
1027
+ </p>
1028
+ </div>
1029
+ </div>
1030
+
1031
+ <div id="method-M000042" class="method-detail">
1032
+ <a name="M000042"></a>
1033
+
1034
+ <div class="method-heading">
1035
+ <a href="WebT2App.src/M000042.html" target="Code" class="method-signature"
1036
+ onclick="popupCode('WebT2App.src/M000042.html');return false;">
1037
+ <span class="method-name">t2_library_sanitize</span><span class="method-args">(string)</span>
1038
+ </a>
1039
+ </div>
1040
+
1041
+ <div class="method-description">
1042
+ <p>
1043
+ Used before we sent the workflow inputs to the taverna server. Just
1044
+ converts double quotations to single ones. That is because the t2-server
1045
+ library is confused with double quotes and apparently it is not easy to
1046
+ fix.
1047
+ </p>
1048
+ </div>
1049
+ </div>
1050
+
1051
+ <div id="method-M000017" class="method-detail">
1052
+ <a name="M000017"></a>
1053
+
1054
+ <div class="method-heading">
1055
+ <a href="WebT2App.src/M000017.html" target="Code" class="method-signature"
1056
+ onclick="popupCode('WebT2App.src/M000017.html');return false;">
1057
+ <span class="method-name">t2_library_sanitize</span><span class="method-args">(string)</span>
1058
+ </a>
1059
+ </div>
1060
+
1061
+ <div class="method-description">
1062
+ <p>
1063
+ Used before we sent the workflow inputs to the taverna server. Just
1064
+ converts double quotations to single ones. That is because the t2-server
1065
+ library is confused with double quotes and apparently it is not easy to
1066
+ fix.
1067
+ </p>
1068
+ </div>
1069
+ </div>
1070
+
1071
+ <div id="method-M000010" class="method-detail">
1072
+ <a name="M000010"></a>
1073
+
1074
+ <div class="method-heading">
1075
+ <a href="WebT2App.src/M000010.html" target="Code" class="method-signature"
1076
+ onclick="popupCode('WebT2App.src/M000010.html');return false;">
1077
+ <span class="method-name">t2_library_sanitize</span><span class="method-args">(string)</span>
1078
+ </a>
1079
+ </div>
1080
+
1081
+ <div class="method-description">
1082
+ <p>
1083
+ Used before we sent the workflow inputs to the taverna server. Just
1084
+ converts double quotations to single ones. That is because the t2-server
1085
+ library is confused with double quotes and apparently it is not easy to
1086
+ fix.
1087
+ </p>
1088
+ </div>
1089
+ </div>
1090
+
1091
+ <div id="method-M000001" class="method-detail">
1092
+ <a name="M000001"></a>
1093
+
1094
+ <div class="method-heading">
1095
+ <a href="WebT2App.src/M000001.html" target="Code" class="method-signature"
1096
+ onclick="popupCode('WebT2App.src/M000001.html');return false;">
1097
+ <span class="method-name">t2_library_sanitize</span><span class="method-args">(string)</span>
1098
+ </a>
1099
+ </div>
1100
+
1101
+ <div class="method-description">
1102
+ <p>
1103
+ Used before we sent the workflow inputs to the taverna server. Just
1104
+ converts double quotations to single ones. That is because the t2-server
1105
+ library is confused with double quotes and apparently it is not easy to
1106
+ fix.
1107
+ </p>
1108
+ </div>
1109
+ </div>
1110
+
1111
+
1112
+ </div>
1113
+
1114
+
1115
+ </div>
1116
+
1117
+
1118
+ <div id="validator-badges">
1119
+ <p><small><a href="http://validator.w3.org/check/referer">[Validate]</a></small></p>
1120
+ </div>
1121
+
1122
+ </body>
1123
+ </html>