t2-web 0.0.5 → 0.0.6

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (66) hide show
  1. data/README +1 -1
  2. data/Rakefile +4 -4
  3. data/doc/classes/WebT2App.html +1123 -0
  4. data/doc/classes/WebT2App.src/M000001.html +18 -0
  5. data/doc/classes/WebT2App.src/M000002.html +25 -0
  6. data/doc/classes/WebT2App.src/M000003.html +22 -0
  7. data/doc/classes/WebT2App.src/M000004.html +18 -0
  8. data/doc/classes/WebT2App.src/M000005.html +18 -0
  9. data/doc/classes/WebT2App.src/M000006.html +18 -0
  10. data/doc/classes/WebT2App.src/M000007.html +18 -0
  11. data/doc/classes/WebT2App.src/M000008.html +32 -0
  12. data/doc/classes/WebT2App.src/M000009.html +27 -0
  13. data/doc/classes/WebT2App.src/M000010.html +18 -0
  14. data/doc/classes/WebT2App.src/M000011.html +21 -0
  15. data/doc/classes/WebT2App.src/M000012.html +25 -0
  16. data/doc/classes/WebT2App.src/M000013.html +22 -0
  17. data/doc/classes/WebT2App.src/M000014.html +23 -0
  18. data/doc/classes/WebT2App.src/M000015.html +32 -0
  19. data/doc/classes/WebT2App.src/M000016.html +27 -0
  20. data/doc/classes/WebT2App.src/M000017.html +18 -0
  21. data/doc/classes/WebT2App.src/M000018.html +25 -0
  22. data/doc/classes/WebT2App.src/M000019.html +22 -0
  23. data/doc/classes/WebT2App.src/M000020.html +18 -0
  24. data/doc/classes/WebT2App.src/M000021.html +18 -0
  25. data/doc/classes/WebT2App.src/M000022.html +18 -0
  26. data/doc/classes/WebT2App.src/M000023.html +18 -0
  27. data/doc/classes/WebT2App.src/M000024.html +32 -0
  28. data/doc/classes/WebT2App.src/M000025.html +27 -0
  29. data/doc/classes/WebT2App.src/M000026.html +18 -0
  30. data/doc/classes/WebT2App.src/M000027.html +21 -0
  31. data/doc/classes/WebT2App.src/M000028.html +25 -0
  32. data/doc/classes/WebT2App.src/M000029.html +22 -0
  33. data/doc/classes/WebT2App.src/M000030.html +23 -0
  34. data/doc/classes/WebT2App.src/M000031.html +32 -0
  35. data/doc/classes/WebT2App.src/M000032.html +27 -0
  36. data/doc/classes/WebT2App.src/M000033.html +18 -0
  37. data/doc/classes/WebT2App.src/M000034.html +25 -0
  38. data/doc/classes/WebT2App.src/M000035.html +22 -0
  39. data/doc/classes/WebT2App.src/M000036.html +18 -0
  40. data/doc/classes/WebT2App.src/M000037.html +18 -0
  41. data/doc/classes/WebT2App.src/M000038.html +18 -0
  42. data/doc/classes/WebT2App.src/M000039.html +18 -0
  43. data/doc/classes/WebT2App.src/M000040.html +32 -0
  44. data/doc/classes/WebT2App.src/M000041.html +27 -0
  45. data/doc/classes/WebT2App.src/M000042.html +18 -0
  46. data/doc/classes/WebT2App.src/M000043.html +25 -0
  47. data/doc/classes/WebT2App.src/M000044.html +22 -0
  48. data/doc/classes/WebT2App.src/M000045.html +18 -0
  49. data/doc/classes/WebT2App.src/M000046.html +18 -0
  50. data/doc/classes/WebT2App.src/M000047.html +18 -0
  51. data/doc/classes/WebT2App.src/M000048.html +18 -0
  52. data/doc/classes/WebT2App.src/M000049.html +32 -0
  53. data/doc/classes/WebT2App.src/M000050.html +27 -0
  54. data/doc/created.rid +1 -0
  55. data/doc/files/bin/t2_webapp_rb.html +115 -0
  56. data/doc/files/pkg/t2-web-0_0_2/bin/web_t2_service_rb.html +114 -0
  57. data/doc/files/pkg/t2-web-0_0_3/bin/t2_webapp_rb.html +115 -0
  58. data/doc/files/pkg/t2-web-0_0_3/bin/web_t2_service_rb.html +114 -0
  59. data/doc/files/pkg/t2-web-0_0_4/bin/t2_webapp_rb.html +115 -0
  60. data/doc/files/pkg/t2-web-0_0_5/bin/t2_webapp_rb.html +115 -0
  61. data/doc/fr_class_index.html +27 -0
  62. data/doc/fr_file_index.html +32 -0
  63. data/doc/fr_method_index.html +76 -0
  64. data/doc/index.html +24 -0
  65. data/doc/rdoc-style.css +208 -0
  66. metadata +71 -8
data/doc/classes/WebT2App.src/M000001.html ADDED
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+ <?xml version="1.0" encoding="iso-8859-1"?>
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+ <!DOCTYPE html
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+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+
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+ <html>
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+ <head>
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+ <title>t2_library_sanitize (WebT2App)</title>
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+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
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+ <link rel="stylesheet" href="../.././rdoc-style.css" type="text/css" media="screen" />
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+ </head>
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+ <body class="standalone-code">
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+ <pre><span class="ruby-comment cmt"># File bin/t2_webapp.rb, line 29</span>
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+ <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">t2_library_sanitize</span>(<span class="ruby-identifier">string</span>)
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+ <span class="ruby-identifier">ex</span> = <span class="ruby-identifier">string</span>.<span class="ruby-identifier">gsub</span>(<span class="ruby-value str">'&quot;'</span>, <span class="ruby-value str">&quot;'&quot;</span>)
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+ <span class="ruby-keyword kw">end</span></pre>
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+ </body>
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+ </html>
data/doc/classes/WebT2App.src/M000002.html ADDED
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+ <?xml version="1.0" encoding="iso-8859-1"?>
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+ <!DOCTYPE html
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+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+
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+ <html>
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+ <head>
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+ <title>chomp_last_newline (WebT2App)</title>
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+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
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+ <link rel="stylesheet" href="../.././rdoc-style.css" type="text/css" media="screen" />
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+ </head>
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+ <body class="standalone-code">
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+ <pre><span class="ruby-comment cmt"># File bin/t2_webapp.rb, line 37</span>
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+ <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">chomp_last_newline</span>(<span class="ruby-identifier">file</span>)
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+
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+ <span class="ruby-keyword kw">if</span> <span class="ruby-constant">File</span>.<span class="ruby-identifier">file?</span>(<span class="ruby-identifier">file</span>) <span class="ruby-keyword kw">and</span> <span class="ruby-constant">File</span>.<span class="ruby-identifier">size</span>(<span class="ruby-identifier">file</span>) <span class="ruby-operator">&gt;</span> <span class="ruby-value">1</span>
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+ <span class="ruby-identifier">f</span> = <span class="ruby-identifier">open</span>(<span class="ruby-identifier">file</span>, <span class="ruby-value str">&quot;rb+&quot;</span>)
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+ <span class="ruby-identifier">f</span>.<span class="ruby-identifier">seek</span>(<span class="ruby-value">-1</span>, <span class="ruby-constant">File</span><span class="ruby-operator">::</span><span class="ruby-constant">SEEK_END</span>)
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+ <span class="ruby-identifier">f</span>.<span class="ruby-identifier">truncate</span>(<span class="ruby-constant">File</span>.<span class="ruby-identifier">size</span>(<span class="ruby-identifier">file</span>) <span class="ruby-operator">-</span> <span class="ruby-value">1</span>) <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">f</span>.<span class="ruby-identifier">read</span>(<span class="ruby-value">1</span>) <span class="ruby-operator">==</span> <span class="ruby-value str">&quot;\n&quot;</span>
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+ <span class="ruby-identifier">f</span>.<span class="ruby-identifier">close</span>
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+ <span class="ruby-keyword kw">end</span>
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+
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+ <span class="ruby-keyword kw">end</span></pre>
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+ </body>
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+ </html>
data/doc/classes/WebT2App.src/M000003.html ADDED
@@ -0,0 +1,22 @@
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+ <?xml version="1.0" encoding="iso-8859-1"?>
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+ <!DOCTYPE html
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+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+
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+ <html>
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+ <head>
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+ <title>get_url_from_wid (WebT2App)</title>
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+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
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+ <link rel="stylesheet" href="../.././rdoc-style.css" type="text/css" media="screen" />
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+ </head>
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+ <body class="standalone-code">
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+ <pre><span class="ruby-comment cmt"># File bin/t2_webapp.rb, line 51</span>
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+ <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">get_url_from_wid</span>(<span class="ruby-identifier">wid</span>, <span class="ruby-identifier">wkf_version</span>)
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+ <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">wkf_version</span> <span class="ruby-operator">==</span> <span class="ruby-value str">&quot;default&quot;</span>
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+ <span class="ruby-node">&quot;/workflows/#{wid}&quot;</span>
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+ <span class="ruby-keyword kw">else</span>
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+ <span class="ruby-node">&quot;/workflows/#{wid}?version=#{wkf_version}&quot;</span>
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+ <span class="ruby-keyword kw">end</span>
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+ <span class="ruby-keyword kw">end</span></pre>
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+ </body>
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+ </html>
data/doc/classes/WebT2App.src/M000004.html ADDED
@@ -0,0 +1,18 @@
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+ <?xml version="1.0" encoding="iso-8859-1"?>
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+ <!DOCTYPE html
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+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+
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+ <html>
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+ <head>
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+ <title>generate_header_frame (WebT2App)</title>
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+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
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+ <link rel="stylesheet" href="../.././rdoc-style.css" type="text/css" media="screen" />
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+ </head>
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+ <body class="standalone-code">
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+ <pre><span class="ruby-comment cmt"># File bin/t2_webapp.rb, line 61</span>
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+ <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">generate_header_frame</span>(<span class="ruby-identifier">my_exp_wkf</span>, <span class="ruby-identifier">my_exp_usr</span>)
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+ <span class="ruby-value str">&quot;&lt;html&gt;\n &lt;head&gt;&lt;link href='/css/form.css' rel='stylesheet'/&gt;&lt;/head&gt;\n &lt;body&gt;\n \#{generate_header_table(my_exp_wkf, my_exp_usr)}\n &lt;/body&gt;\n&lt;/html&gt;\n&quot;</span>
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+ <span class="ruby-keyword kw">end</span></pre>
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+ </body>
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+ </html>
data/doc/classes/WebT2App.src/M000005.html ADDED
@@ -0,0 +1,18 @@
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+ <?xml version="1.0" encoding="iso-8859-1"?>
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+ <!DOCTYPE html
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+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+
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+ <html>
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+ <head>
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+ <title>generate_header_table (WebT2App)</title>
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+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
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+ <link rel="stylesheet" href="../.././rdoc-style.css" type="text/css" media="screen" />
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+ </head>
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+ <body class="standalone-code">
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+ <pre><span class="ruby-comment cmt"># File bin/t2_webapp.rb, line 75</span>
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+ <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">generate_header_table</span>(<span class="ruby-identifier">my_exp_wkf</span>, <span class="ruby-identifier">my_exp_usr</span>)
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+ <span class="ruby-value str">&quot; &lt;div id='header'&gt;\n &lt;table class='header'&gt;\n &lt;tr&gt;\n &lt;td&gt;\n &lt;img alt='NBIC logo' src='/images/nbic_logo.gif' /&gt;\n &lt;/td&gt;\n &lt;td&gt;\n &lt;table class='header-title'&gt;\n &lt;tr&gt;\n &lt;td class='header-title'&gt;Workflow: \#{@my_exp_wkf.title}&lt;/td&gt;\n &lt;/tr&gt;\n &lt;tr&gt;\n &lt;td class='right'&gt;workflow by \#{@my_exp_usr.name}&lt;/td&gt;\n\n &lt;/tr&gt;\n &lt;/table&gt;\n &lt;/td&gt;\n &lt;td&gt;\n &lt;img alt='LUMC logo' class='right' src='/images/lumc_logo2.png' /&gt;\n &lt;/td&gt;\n &lt;/tr&gt;\n &lt;/table&gt;\n &lt;/div&gt;\n&quot;</span>
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+ <span class="ruby-keyword kw">end</span></pre>
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+ </body>
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+ </html>
data/doc/classes/WebT2App.src/M000006.html ADDED
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+ <?xml version="1.0" encoding="iso-8859-1"?>
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+ <!DOCTYPE html
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+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+
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+ <html>
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+ <head>
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+ <title>generate_label_tooltip (WebT2App)</title>
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+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
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+ <link rel="stylesheet" href="../.././rdoc-style.css" type="text/css" media="screen" />
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+ </head>
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+ <body class="standalone-code">
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+ <pre><span class="ruby-comment cmt"># File bin/t2_webapp.rb, line 106</span>
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+ <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">generate_label_tooltip</span>(<span class="ruby-identifier">input</span>)
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+ <span class="ruby-value str">&quot;Description: &quot;</span> <span class="ruby-operator">&lt;&lt;</span> <span class="ruby-constant">CGI</span><span class="ruby-operator">::</span><span class="ruby-identifier">unescapeHTML</span>(<span class="ruby-identifier">input</span>.<span class="ruby-identifier">descriptions</span>[<span class="ruby-value">0</span>])
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+ <span class="ruby-keyword kw">end</span></pre>
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+ </body>
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+ </html>
data/doc/classes/WebT2App.src/M000007.html ADDED
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+ <?xml version="1.0" encoding="iso-8859-1"?>
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+ <!DOCTYPE html
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+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+
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+ <html>
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+ <head>
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+ <title>generate_textarea_tooltip (WebT2App)</title>
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+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
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+ <link rel="stylesheet" href="../.././rdoc-style.css" type="text/css" media="screen" />
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+ </head>
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+ <body class="standalone-code">
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+ <pre><span class="ruby-comment cmt"># File bin/t2_webapp.rb, line 111</span>
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+ <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">generate_textarea_tooltip</span>(<span class="ruby-identifier">input</span>)
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+ <span class="ruby-value str">&quot;Example: &quot;</span> <span class="ruby-operator">&lt;&lt;</span> <span class="ruby-constant">CGI</span><span class="ruby-operator">::</span><span class="ruby-identifier">unescapeHTML</span>(<span class="ruby-identifier">input</span>.<span class="ruby-identifier">examples</span>[<span class="ruby-value">0</span>])
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+ <span class="ruby-keyword kw">end</span></pre>
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+ </body>
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+ </html>
data/doc/classes/WebT2App.src/M000008.html ADDED
@@ -0,0 +1,32 @@
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+ <?xml version="1.0" encoding="iso-8859-1"?>
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+ <!DOCTYPE html
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+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+
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+ <html>
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+ <head>
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+ <title>generate_data_navigation_frame (WebT2App)</title>
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+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
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+ <link rel="stylesheet" href="../.././rdoc-style.css" type="text/css" media="screen" />
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+ </head>
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+ <body class="standalone-code">
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+ <pre><span class="ruby-comment cmt"># File bin/t2_webapp.rb, line 117</span>
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+ <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">generate_data_navigation_frame</span>(<span class="ruby-identifier">my_exp_wkf</span>, <span class="ruby-identifier">uuid</span>, <span class="ruby-identifier">wid</span>, <span class="ruby-identifier">wkf_version</span>, <span class="ruby-identifier">t2_server</span>, <span class="ruby-identifier">finished_execution</span>)
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+
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+ <span class="ruby-identifier">data_navigation_frame</span> = <span class="ruby-value str">&quot;&lt;html&gt;&lt;head&gt;&lt;link href='/css/results_navigation.css' rel='stylesheet'/&gt;&lt;/head&gt;&lt;body&gt;&lt;table&gt;&quot;</span>
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+ <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">my_exp_wkf</span>.<span class="ruby-identifier">outputs</span>.<span class="ruby-identifier">size</span> <span class="ruby-operator">&gt;=</span><span class="ruby-value">1</span>
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+ <span class="ruby-identifier">my_exp_wkf</span>.<span class="ruby-identifier">outputs</span>.<span class="ruby-identifier">each</span> <span class="ruby-keyword kw">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">output</span><span class="ruby-operator">|</span>
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+ <span class="ruby-identifier">data_navigation_frame</span> <span class="ruby-operator">&lt;&lt;</span> <span class="ruby-value str">&quot;&lt;tr&gt;&quot;</span>
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+ <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">finished_execution</span>
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+ <span class="ruby-identifier">data_navigation_frame</span> <span class="ruby-operator">&lt;&lt;</span> <span class="ruby-node">&quot;&lt;td&gt;&lt;a href='javascript:void(0);' onclick='parent.getSampleOutput(\\\&quot;#{t2_server}\\\&quot;, \\\&quot;#{uuid}\\\&quot;, &quot;</span> <span class="ruby-operator">&lt;&lt;</span>
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+ <span class="ruby-node">&quot;\\\&quot;#{output.name}\\\&quot;, \\\&quot;#{wid}\\\&quot;, \\\&quot;#{wkf_version}\\\&quot;);'&gt;#{output.name}&lt;/a&gt;&lt;/td&gt;&lt;td&gt;&lt;/td&gt;&quot;</span>
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+ <span class="ruby-keyword kw">else</span>
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+ <span class="ruby-identifier">data_navigation_frame</span> <span class="ruby-operator">&lt;&lt;</span> <span class="ruby-node">&quot;&lt;td&gt;#{output.name}&lt;/td&gt;&lt;td&gt;&lt;img src='/images/snake_transparent.gif' alt='Loading Content...'&gt;&lt;/td&gt;&quot;</span>
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+ <span class="ruby-keyword kw">end</span>
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+ <span class="ruby-identifier">data_navigation_frame</span> <span class="ruby-operator">&lt;&lt;</span> <span class="ruby-value str">&quot;&lt;/tr&gt;&quot;</span>
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+ <span class="ruby-keyword kw">end</span>
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+ <span class="ruby-keyword kw">end</span>
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+ <span class="ruby-identifier">data_navigation_frame</span> <span class="ruby-operator">&lt;&lt;</span> <span class="ruby-value str">&quot;&lt;/table&gt;&lt;/body&gt;&lt;/html&gt;&quot;</span>
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+ <span class="ruby-keyword kw">end</span></pre>
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+ </body>
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+ </html>
data/doc/classes/WebT2App.src/M000009.html ADDED
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+ <?xml version="1.0" encoding="iso-8859-1"?>
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+ <!DOCTYPE html
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+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+
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+ <html>
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+ <head>
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+ <title>generate_html_result (WebT2App)</title>
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+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
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+ <link rel="stylesheet" href="../.././rdoc-style.css" type="text/css" media="screen" />
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+ </head>
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+ <body class="standalone-code">
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+ <pre><span class="ruby-comment cmt"># File bin/t2_webapp.rb, line 137</span>
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+ <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">generate_html_result</span>(<span class="ruby-identifier">data</span>)
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+ <span class="ruby-identifier">html</span> = <span class="ruby-value str">&quot;&quot;</span>
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+ <span class="ruby-comment cmt">#p data</span>
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+ <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">data</span>.<span class="ruby-identifier">instance_of?</span> <span class="ruby-constant">Array</span>
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+ <span class="ruby-identifier">html</span> = <span class="ruby-identifier">data</span>.<span class="ruby-identifier">flatten</span>.<span class="ruby-identifier">join</span>(<span class="ruby-value str">'&lt;br&gt;'</span>)
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+ <span class="ruby-keyword kw">elsif</span> <span class="ruby-identifier">data</span>.<span class="ruby-identifier">instance_of?</span> <span class="ruby-constant">String</span>
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+ <span class="ruby-identifier">html</span> = <span class="ruby-identifier">data</span>.<span class="ruby-identifier">gsub</span>(<span class="ruby-regexp re">/[\n]/</span>, <span class="ruby-value str">'&lt;br&gt;'</span>)
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+ <span class="ruby-keyword kw">else</span>
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+ <span class="ruby-identifier">html</span> = <span class="ruby-identifier">data</span>
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+ <span class="ruby-keyword kw">end</span>
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+ <span class="ruby-identifier">html</span>
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+ <span class="ruby-keyword kw">end</span></pre>
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+ </body>
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+ </html>
data/doc/classes/WebT2App.src/M000010.html ADDED
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+ <?xml version="1.0" encoding="iso-8859-1"?>
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+ <!DOCTYPE html
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+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+
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+ <html>
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+ <head>
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+ <title>t2_library_sanitize (WebT2App)</title>
9
+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
10
+ <link rel="stylesheet" href="../.././rdoc-style.css" type="text/css" media="screen" />
11
+ </head>
12
+ <body class="standalone-code">
13
+ <pre><span class="ruby-comment cmt"># File pkg/t2-web-0.0.3/bin/web_t2_service.rb, line 28</span>
14
+ <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">t2_library_sanitize</span>(<span class="ruby-identifier">string</span>)
15
+ <span class="ruby-identifier">ex</span> = <span class="ruby-identifier">string</span>.<span class="ruby-identifier">gsub</span>(<span class="ruby-value str">'&quot;'</span>, <span class="ruby-value str">&quot;'&quot;</span>)
16
+ <span class="ruby-keyword kw">end</span></pre>
17
+ </body>
18
+ </html>
data/doc/classes/WebT2App.src/M000011.html ADDED
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+ <?xml version="1.0" encoding="iso-8859-1"?>
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+ <!DOCTYPE html
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+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+
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+ <html>
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+ <head>
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+ <title>html_sanitise (WebT2App)</title>
9
+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
10
+ <link rel="stylesheet" href="../.././rdoc-style.css" type="text/css" media="screen" />
11
+ </head>
12
+ <body class="standalone-code">
13
+ <pre><span class="ruby-comment cmt"># File pkg/t2-web-0.0.3/bin/web_t2_service.rb, line 34</span>
14
+ <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">html_sanitise</span>(<span class="ruby-identifier">string</span>)
15
+ <span class="ruby-comment cmt"># escape double quotes characters</span>
16
+ <span class="ruby-identifier">ex</span> = <span class="ruby-identifier">string</span>.<span class="ruby-identifier">gsub</span>(<span class="ruby-value str">'&quot;'</span>, <span class="ruby-value str">'&amp;quot;'</span>)
17
+ <span class="ruby-comment cmt"># convert newlines to HTML newlines to display in textareas inputs</span>
18
+ <span class="ruby-identifier">ex</span> = <span class="ruby-identifier">ex</span>.<span class="ruby-identifier">gsub</span>(<span class="ruby-regexp re">/[\n]/</span>, <span class="ruby-value str">'&amp;#xA;'</span>)
19
+ <span class="ruby-keyword kw">end</span></pre>
20
+ </body>
21
+ </html>
data/doc/classes/WebT2App.src/M000012.html ADDED
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1
+ <?xml version="1.0" encoding="iso-8859-1"?>
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+ <!DOCTYPE html
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+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
5
+
6
+ <html>
7
+ <head>
8
+ <title>chomp_last_newline (WebT2App)</title>
9
+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
10
+ <link rel="stylesheet" href="../.././rdoc-style.css" type="text/css" media="screen" />
11
+ </head>
12
+ <body class="standalone-code">
13
+ <pre><span class="ruby-comment cmt"># File pkg/t2-web-0.0.3/bin/web_t2_service.rb, line 45</span>
14
+ <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">chomp_last_newline</span>(<span class="ruby-identifier">file</span>)
15
+
16
+ <span class="ruby-keyword kw">if</span> <span class="ruby-constant">File</span>.<span class="ruby-identifier">file?</span>(<span class="ruby-identifier">file</span>) <span class="ruby-keyword kw">and</span> <span class="ruby-constant">File</span>.<span class="ruby-identifier">size</span>(<span class="ruby-identifier">file</span>) <span class="ruby-operator">&gt;</span> <span class="ruby-value">1</span>
17
+ <span class="ruby-identifier">f</span> = <span class="ruby-identifier">open</span>(<span class="ruby-identifier">file</span>, <span class="ruby-value str">&quot;rb+&quot;</span>)
18
+ <span class="ruby-identifier">f</span>.<span class="ruby-identifier">seek</span>(<span class="ruby-value">-1</span>, <span class="ruby-constant">File</span><span class="ruby-operator">::</span><span class="ruby-constant">SEEK_END</span>)
19
+ <span class="ruby-identifier">f</span>.<span class="ruby-identifier">truncate</span>(<span class="ruby-constant">File</span>.<span class="ruby-identifier">size</span>(<span class="ruby-identifier">file</span>) <span class="ruby-operator">-</span> <span class="ruby-value">1</span>) <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">f</span>.<span class="ruby-identifier">read</span>(<span class="ruby-value">1</span>) <span class="ruby-operator">==</span> <span class="ruby-value str">&quot;\n&quot;</span>
20
+ <span class="ruby-identifier">f</span>.<span class="ruby-identifier">close</span>
21
+ <span class="ruby-keyword kw">end</span>
22
+
23
+ <span class="ruby-keyword kw">end</span></pre>
24
+ </body>
25
+ </html>
data/doc/classes/WebT2App.src/M000013.html ADDED
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1
+ <?xml version="1.0" encoding="iso-8859-1"?>
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+ <!DOCTYPE html
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+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
4
+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
5
+
6
+ <html>
7
+ <head>
8
+ <title>get_url_from_wid (WebT2App)</title>
9
+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
10
+ <link rel="stylesheet" href="../.././rdoc-style.css" type="text/css" media="screen" />
11
+ </head>
12
+ <body class="standalone-code">
13
+ <pre><span class="ruby-comment cmt"># File pkg/t2-web-0.0.3/bin/web_t2_service.rb, line 59</span>
14
+ <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">get_url_from_wid</span>(<span class="ruby-identifier">wid</span>, <span class="ruby-identifier">wkf_version</span>)
15
+ <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">wkf_version</span> <span class="ruby-operator">==</span> <span class="ruby-value str">&quot;default&quot;</span>
16
+ <span class="ruby-node">&quot;/workflows/#{wid}&quot;</span>
17
+ <span class="ruby-keyword kw">else</span>
18
+ <span class="ruby-node">&quot;/workflows/#{wid}?version=#{wkf_version}&quot;</span>
19
+ <span class="ruby-keyword kw">end</span>
20
+ <span class="ruby-keyword kw">end</span></pre>
21
+ </body>
22
+ </html>
data/doc/classes/WebT2App.src/M000014.html ADDED
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1
+ <?xml version="1.0" encoding="iso-8859-1"?>
2
+ <!DOCTYPE html
3
+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
4
+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
5
+
6
+ <html>
7
+ <head>
8
+ <title>generate_header_frame (WebT2App)</title>
9
+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
10
+ <link rel="stylesheet" href="../.././rdoc-style.css" type="text/css" media="screen" />
11
+ </head>
12
+ <body class="standalone-code">
13
+ <pre><span class="ruby-comment cmt"># File pkg/t2-web-0.0.3/bin/web_t2_service.rb, line 69</span>
14
+ <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">generate_header_frame</span>(<span class="ruby-identifier">my_exp_wkf</span>)
15
+ <span class="ruby-value str">&quot;&lt;html&gt;&quot;</span> <span class="ruby-operator">&lt;&lt;</span>
16
+ <span class="ruby-value str">&quot;&lt;head&gt;&lt;link href='/css/results_header.css' rel='stylesheet'/&gt;&lt;/head&gt;&quot;</span> <span class="ruby-operator">&lt;&lt;</span>
17
+ <span class="ruby-value str">&quot;&lt;body&gt;&lt;table class='header'&gt;&quot;</span> <span class="ruby-operator">&lt;&lt;</span>
18
+ <span class="ruby-node">&quot;&lt;tr&gt;&lt;td class='header'&gt;Workflow: #{my_exp_wkf.title}&lt;/td&gt;&lt;/tr&gt;&quot;</span> <span class="ruby-operator">&lt;&lt;</span>
19
+ <span class="ruby-value str">&quot;&lt;/table&gt;&lt;/body&gt;&quot;</span> <span class="ruby-operator">&lt;&lt;</span>
20
+ <span class="ruby-value str">&quot;&lt;/html&gt;&quot;</span>
21
+ <span class="ruby-keyword kw">end</span></pre>
22
+ </body>
23
+ </html>
data/doc/classes/WebT2App.src/M000015.html ADDED
@@ -0,0 +1,32 @@
1
+ <?xml version="1.0" encoding="iso-8859-1"?>
2
+ <!DOCTYPE html
3
+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
4
+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
5
+
6
+ <html>
7
+ <head>
8
+ <title>generate_data_navigation_frame (WebT2App)</title>
9
+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
10
+ <link rel="stylesheet" href="../.././rdoc-style.css" type="text/css" media="screen" />
11
+ </head>
12
+ <body class="standalone-code">
13
+ <pre><span class="ruby-comment cmt"># File pkg/t2-web-0.0.3/bin/web_t2_service.rb, line 80</span>
14
+ <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">generate_data_navigation_frame</span>(<span class="ruby-identifier">my_exp_wkf</span>, <span class="ruby-identifier">uuid</span>, <span class="ruby-identifier">wid</span>, <span class="ruby-identifier">wkf_version</span>, <span class="ruby-identifier">t2_server</span>, <span class="ruby-identifier">finished_execution</span>)
15
+
16
+ <span class="ruby-identifier">data_navigation_frame</span> = <span class="ruby-value str">&quot;&lt;html&gt;&lt;head&gt;&lt;link href='/css/results_navigation.css' rel='stylesheet'/&gt;&lt;/head&gt;&lt;body&gt;&lt;table&gt;&quot;</span>
17
+ <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">my_exp_wkf</span>.<span class="ruby-identifier">outputs</span>.<span class="ruby-identifier">size</span> <span class="ruby-operator">&gt;=</span><span class="ruby-value">1</span>
18
+ <span class="ruby-identifier">my_exp_wkf</span>.<span class="ruby-identifier">outputs</span>.<span class="ruby-identifier">each</span> <span class="ruby-keyword kw">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">output</span><span class="ruby-operator">|</span>
19
+ <span class="ruby-identifier">data_navigation_frame</span> <span class="ruby-operator">&lt;&lt;</span> <span class="ruby-value str">&quot;&lt;tr&gt;&quot;</span>
20
+ <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">finished_execution</span>
21
+ <span class="ruby-identifier">data_navigation_frame</span> <span class="ruby-operator">&lt;&lt;</span> <span class="ruby-node">&quot;&lt;td&gt;&lt;a href='javascript:void(0);' onclick='parent.getSampleOutput(\\\&quot;#{t2_server}\\\&quot;, \\\&quot;#{uuid}\\\&quot;, &quot;</span> <span class="ruby-operator">&lt;&lt;</span>
22
+ <span class="ruby-node">&quot;\\\&quot;#{output.name}\\\&quot;, \\\&quot;#{wid}\\\&quot;, \\\&quot;#{wkf_version}\\\&quot;);'&gt;#{output.name}&lt;/a&gt;&lt;/td&gt;&lt;td&gt;&lt;/td&gt;&quot;</span>
23
+ <span class="ruby-keyword kw">else</span>
24
+ <span class="ruby-identifier">data_navigation_frame</span> <span class="ruby-operator">&lt;&lt;</span> <span class="ruby-node">&quot;&lt;td&gt;#{output.name}&lt;/td&gt;&lt;td&gt;&lt;img src='/images/snake_transparent.gif' alt='Loading Content...'&gt;&lt;/td&gt;&quot;</span>
25
+ <span class="ruby-keyword kw">end</span>
26
+ <span class="ruby-identifier">data_navigation_frame</span> <span class="ruby-operator">&lt;&lt;</span> <span class="ruby-value str">&quot;&lt;/tr&gt;&quot;</span>
27
+ <span class="ruby-keyword kw">end</span>
28
+ <span class="ruby-keyword kw">end</span>
29
+ <span class="ruby-identifier">data_navigation_frame</span> <span class="ruby-operator">&lt;&lt;</span> <span class="ruby-value str">&quot;&lt;/table&gt;&lt;/body&gt;&lt;/html&gt;&quot;</span>
30
+ <span class="ruby-keyword kw">end</span></pre>
31
+ </body>
32
+ </html>
data/doc/classes/WebT2App.src/M000016.html ADDED
@@ -0,0 +1,27 @@
1
+ <?xml version="1.0" encoding="iso-8859-1"?>
2
+ <!DOCTYPE html
3
+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
4
+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
5
+
6
+ <html>
7
+ <head>
8
+ <title>generate_html_result (WebT2App)</title>
9
+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
10
+ <link rel="stylesheet" href="../.././rdoc-style.css" type="text/css" media="screen" />
11
+ </head>
12
+ <body class="standalone-code">
13
+ <pre><span class="ruby-comment cmt"># File pkg/t2-web-0.0.3/bin/web_t2_service.rb, line 100</span>
14
+ <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">generate_html_result</span>(<span class="ruby-identifier">data</span>)
15
+ <span class="ruby-identifier">html</span> = <span class="ruby-value str">&quot;&quot;</span>
16
+ <span class="ruby-comment cmt">#p data</span>
17
+ <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">data</span>.<span class="ruby-identifier">instance_of?</span> <span class="ruby-constant">Array</span>
18
+ <span class="ruby-identifier">html</span> = <span class="ruby-identifier">data</span>.<span class="ruby-identifier">flatten</span>.<span class="ruby-identifier">join</span>(<span class="ruby-value str">'&lt;br&gt;'</span>)
19
+ <span class="ruby-keyword kw">elsif</span> <span class="ruby-identifier">data</span>.<span class="ruby-identifier">instance_of?</span> <span class="ruby-constant">String</span>
20
+ <span class="ruby-identifier">html</span> = <span class="ruby-identifier">data</span>.<span class="ruby-identifier">gsub</span>(<span class="ruby-regexp re">/[\n]/</span>, <span class="ruby-value str">'&lt;br&gt;'</span>)
21
+ <span class="ruby-keyword kw">else</span>
22
+ <span class="ruby-identifier">html</span> = <span class="ruby-identifier">data</span>
23
+ <span class="ruby-keyword kw">end</span>
24
+ <span class="ruby-identifier">html</span>
25
+ <span class="ruby-keyword kw">end</span></pre>
26
+ </body>
27
+ </html>
data/doc/classes/WebT2App.src/M000017.html ADDED
@@ -0,0 +1,18 @@
1
+ <?xml version="1.0" encoding="iso-8859-1"?>
2
+ <!DOCTYPE html
3
+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
4
+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
5
+
6
+ <html>
7
+ <head>
8
+ <title>t2_library_sanitize (WebT2App)</title>
9
+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
10
+ <link rel="stylesheet" href="../.././rdoc-style.css" type="text/css" media="screen" />
11
+ </head>
12
+ <body class="standalone-code">
13
+ <pre><span class="ruby-comment cmt"># File pkg/t2-web-0.0.3/bin/t2_webapp.rb, line 29</span>
14
+ <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">t2_library_sanitize</span>(<span class="ruby-identifier">string</span>)
15
+ <span class="ruby-identifier">ex</span> = <span class="ruby-identifier">string</span>.<span class="ruby-identifier">gsub</span>(<span class="ruby-value str">'&quot;'</span>, <span class="ruby-value str">&quot;'&quot;</span>)
16
+ <span class="ruby-keyword kw">end</span></pre>
17
+ </body>
18
+ </html>
data/doc/classes/WebT2App.src/M000018.html ADDED
@@ -0,0 +1,25 @@
1
+ <?xml version="1.0" encoding="iso-8859-1"?>
2
+ <!DOCTYPE html
3
+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
4
+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
5
+
6
+ <html>
7
+ <head>
8
+ <title>chomp_last_newline (WebT2App)</title>
9
+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
10
+ <link rel="stylesheet" href="../.././rdoc-style.css" type="text/css" media="screen" />
11
+ </head>
12
+ <body class="standalone-code">
13
+ <pre><span class="ruby-comment cmt"># File pkg/t2-web-0.0.3/bin/t2_webapp.rb, line 37</span>
14
+ <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">chomp_last_newline</span>(<span class="ruby-identifier">file</span>)
15
+
16
+ <span class="ruby-keyword kw">if</span> <span class="ruby-constant">File</span>.<span class="ruby-identifier">file?</span>(<span class="ruby-identifier">file</span>) <span class="ruby-keyword kw">and</span> <span class="ruby-constant">File</span>.<span class="ruby-identifier">size</span>(<span class="ruby-identifier">file</span>) <span class="ruby-operator">&gt;</span> <span class="ruby-value">1</span>
17
+ <span class="ruby-identifier">f</span> = <span class="ruby-identifier">open</span>(<span class="ruby-identifier">file</span>, <span class="ruby-value str">&quot;rb+&quot;</span>)
18
+ <span class="ruby-identifier">f</span>.<span class="ruby-identifier">seek</span>(<span class="ruby-value">-1</span>, <span class="ruby-constant">File</span><span class="ruby-operator">::</span><span class="ruby-constant">SEEK_END</span>)
19
+ <span class="ruby-identifier">f</span>.<span class="ruby-identifier">truncate</span>(<span class="ruby-constant">File</span>.<span class="ruby-identifier">size</span>(<span class="ruby-identifier">file</span>) <span class="ruby-operator">-</span> <span class="ruby-value">1</span>) <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">f</span>.<span class="ruby-identifier">read</span>(<span class="ruby-value">1</span>) <span class="ruby-operator">==</span> <span class="ruby-value str">&quot;\n&quot;</span>
20
+ <span class="ruby-identifier">f</span>.<span class="ruby-identifier">close</span>
21
+ <span class="ruby-keyword kw">end</span>
22
+
23
+ <span class="ruby-keyword kw">end</span></pre>
24
+ </body>
25
+ </html>
data/doc/classes/WebT2App.src/M000019.html ADDED
@@ -0,0 +1,22 @@
1
+ <?xml version="1.0" encoding="iso-8859-1"?>
2
+ <!DOCTYPE html
3
+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
4
+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
5
+
6
+ <html>
7
+ <head>
8
+ <title>get_url_from_wid (WebT2App)</title>
9
+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
10
+ <link rel="stylesheet" href="../.././rdoc-style.css" type="text/css" media="screen" />
11
+ </head>
12
+ <body class="standalone-code">
13
+ <pre><span class="ruby-comment cmt"># File pkg/t2-web-0.0.3/bin/t2_webapp.rb, line 51</span>
14
+ <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">get_url_from_wid</span>(<span class="ruby-identifier">wid</span>, <span class="ruby-identifier">wkf_version</span>)
15
+ <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">wkf_version</span> <span class="ruby-operator">==</span> <span class="ruby-value str">&quot;default&quot;</span>
16
+ <span class="ruby-node">&quot;/workflows/#{wid}&quot;</span>
17
+ <span class="ruby-keyword kw">else</span>
18
+ <span class="ruby-node">&quot;/workflows/#{wid}?version=#{wkf_version}&quot;</span>
19
+ <span class="ruby-keyword kw">end</span>
20
+ <span class="ruby-keyword kw">end</span></pre>
21
+ </body>
22
+ </html>