t2-server 0.2.0 → 0.2.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- data/README.rdoc +1 -1
- data/lib/t2server.rb +1 -1
- data/lib/t2server/run.rb +17 -18
- data/lib/t2server/server.rb +7 -8
- metadata +4 -4
data/README.rdoc
CHANGED
data/lib/t2server.rb
CHANGED
@@ -43,7 +43,7 @@ require 't2server/run'
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# Taverna 2 Server instance.
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module T2Server
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# The version of this library
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-
GEM_VERSION = "0.
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GEM_VERSION = "0.2.1"
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# The version of the Taverna 2 Server API that this library can interface with
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API_VERSION = "2.2a1"
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end
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data/lib/t2server/run.rb
CHANGED
@@ -31,7 +31,6 @@
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# Author: Robert Haines
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require 'rexml/document'
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include REXML
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module T2Server
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@@ -361,14 +360,14 @@ module T2Server
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def ls(dir="")
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dir.strip_path!
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dir_list = @server.get_run_attribute(@uuid, "#{@links[:wdir]}/#{dir}")
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doc = Document.new(dir_list)
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doc = REXML::Document.new(dir_list)
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# compile a list of directory entries stripping the
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# directory name from the front of each filename
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dirs = []
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files = []
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XPath.each(doc, "//nss:dir", Namespaces::MAP) {|e| dirs << e.text.split('/')[-1]}
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XPath.each(doc, "//nss:file", Namespaces::MAP) {|e| files << e.text.split('/')[-1]}
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REXML::XPath.each(doc, "//nss:dir", Namespaces::MAP) {|e| dirs << e.text.split('/')[-1]}
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REXML::XPath.each(doc, "//nss:file", Namespaces::MAP) {|e| files << e.text.split('/')[-1]}
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[dirs, files]
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end
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@@ -427,9 +426,9 @@ module T2Server
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# get inputs
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inputs = @server.get_run_attribute(@uuid, links[:inputs])
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doc = Document.new(inputs)
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doc = REXML::Document.new(inputs)
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nsmap = Namespaces::MAP
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links[:baclava] = "#{links[:inputs]}/" + XPath.first(doc, "//nsr:baclava", nsmap).attributes["href"].split('/')[-1]
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links[:baclava] = "#{links[:inputs]}/" + REXML::XPath.first(doc, "//nsr:baclava", nsmap).attributes["href"].split('/')[-1]
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# set io properties
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links[:io] = "#{links[:listeners]}/io"
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@@ -441,20 +440,20 @@ module T2Server
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end
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def parse_description(desc)
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doc = Document.new(desc)
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doc = REXML::Document.new(desc)
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nsmap = Namespaces::MAP
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{
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:expiry => XPath.first(doc, "//nsr:expiry", nsmap).attributes["href"].split('/')[-1],
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:workflow => XPath.first(doc, "//nsr:creationWorkflow", nsmap).attributes["href"].split('/')[-1],
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:status => XPath.first(doc, "//nsr:status", nsmap).attributes["href"].split('/')[-1],
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:createtime => XPath.first(doc, "//nsr:createTime", nsmap).attributes["href"].split('/')[-1],
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:starttime => XPath.first(doc, "//nsr:startTime", nsmap).attributes["href"].split('/')[-1],
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:finishtime => XPath.first(doc, "//nsr:finishTime", nsmap).attributes["href"].split('/')[-1],
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:wdir => XPath.first(doc, "//nsr:workingDirectory", nsmap).attributes["href"].split('/')[-1],
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:inputs => XPath.first(doc, "//nsr:inputs", nsmap).attributes["href"].split('/')[-1],
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:output => XPath.first(doc, "//nsr:output", nsmap).attributes["href"].split('/')[-1],
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:securectx => XPath.first(doc, "//nsr:securityContext", nsmap).attributes["href"].split('/')[-1],
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:listeners => XPath.first(doc, "//nsr:listeners", nsmap).attributes["href"].split('/')[-1]
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:expiry => REXML::XPath.first(doc, "//nsr:expiry", nsmap).attributes["href"].split('/')[-1],
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:workflow => REXML::XPath.first(doc, "//nsr:creationWorkflow", nsmap).attributes["href"].split('/')[-1],
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:status => REXML::XPath.first(doc, "//nsr:status", nsmap).attributes["href"].split('/')[-1],
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:createtime => REXML::XPath.first(doc, "//nsr:createTime", nsmap).attributes["href"].split('/')[-1],
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:starttime => REXML::XPath.first(doc, "//nsr:startTime", nsmap).attributes["href"].split('/')[-1],
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:finishtime => REXML::XPath.first(doc, "//nsr:finishTime", nsmap).attributes["href"].split('/')[-1],
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:wdir => REXML::XPath.first(doc, "//nsr:workingDirectory", nsmap).attributes["href"].split('/')[-1],
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:inputs => REXML::XPath.first(doc, "//nsr:inputs", nsmap).attributes["href"].split('/')[-1],
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:output => REXML::XPath.first(doc, "//nsr:output", nsmap).attributes["href"].split('/')[-1],
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:securectx => REXML::XPath.first(doc, "//nsr:securityContext", nsmap).attributes["href"].split('/')[-1],
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:listeners => REXML::XPath.first(doc, "//nsr:listeners", nsmap).attributes["href"].split('/')[-1]
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}
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end
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end
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data/lib/t2server/server.rb
CHANGED
@@ -34,7 +34,6 @@ require 'base64'
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require 'uri'
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require 'net/https'
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require 'rexml/document'
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include REXML
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module T2Server
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@@ -394,24 +393,24 @@ module T2Server
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end
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def parse_description(desc)
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doc = Document.new(desc)
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doc = REXML::Document.new(desc)
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nsmap = Namespaces::MAP
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{
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:runs => URI.parse(XPath.first(doc, "//nsr:runs", nsmap).attributes["href"]).path,
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:runlimit => URI.parse(XPath.first(doc, "//nsr:runLimit", nsmap).attributes["href"]).path,
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:permworkflows => URI.parse(XPath.first(doc, "//nsr:permittedWorkflows", nsmap).attributes["href"]).path,
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:permlisteners => URI.parse(XPath.first(doc, "//nsr:permittedListeners", nsmap).attributes["href"]).path
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:runs => URI.parse(REXML::XPath.first(doc, "//nsr:runs", nsmap).attributes["href"]).path,
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:runlimit => URI.parse(REXML::XPath.first(doc, "//nsr:runLimit", nsmap).attributes["href"]).path,
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:permworkflows => URI.parse(REXML::XPath.first(doc, "//nsr:permittedWorkflows", nsmap).attributes["href"]).path,
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:permlisteners => URI.parse(REXML::XPath.first(doc, "//nsr:permittedListeners", nsmap).attributes["href"]).path
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}
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end
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def get_runs
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run_list = get_attribute("#{@links[:runs]}")
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doc = Document.new(run_list)
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doc = REXML::Document.new(run_list)
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# get list of run uuids
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uuids = []
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XPath.each(doc, "//nsr:run", Namespaces::MAP) do |run|
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REXML::XPath.each(doc, "//nsr:run", Namespaces::MAP) do |run|
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uuids << run.attributes["href"].split('/')[-1]
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end
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metadata
CHANGED
@@ -1,13 +1,13 @@
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--- !ruby/object:Gem::Specification
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name: t2-server
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version: !ruby/object:Gem::Version
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hash:
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hash: 21
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prerelease: false
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segments:
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- 0
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- 2
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-
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version: 0.2.
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- 1
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version: 0.2.1
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platform: ruby
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authors:
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- Robert Haines
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@@ -15,7 +15,7 @@ autorequire:
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bindir: bin
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cert_chain: []
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date: 2010-09-
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date: 2010-09-23 00:00:00 +01:00
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default_executable:
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dependencies:
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- !ruby/object:Gem::Dependency
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