t2-server 0.0.4 → 0.1.0

data/test/tc_run.rb

@@ -0,0 +1,72 @@
+# Copyright (c) 2010, The University of Manchester, UK.
+#
+# All rights reserved.
+#
+# Redistribution and use in source and binary forms, with or without
+# modification, are permitted provided that the following conditions are met:
+#
+#  * Redistributions of source code must retain the above copyright notice,
+#    this list of conditions and the following disclaimer.
+#
+#  * Redistributions in binary form must reproduce the above copyright notice,
+#    this list of conditions and the following disclaimer in the documentation
+#    and/or other materials provided with the distribution.
+#
+#  * Neither the names of The University of Manchester nor the names of its
+#    contributors may be used to endorse or promote products derived from this
+#    software without specific prior written permission. 
+#
+# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+# AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+# IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+# ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
+# LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+# CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
+# SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
+# INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
+# CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+# ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
+# POSSIBILITY OF SUCH DAMAGE.
+#
+# Author: Robert Haines
+
+require 't2server'
+
+class TestRun < Test::Unit::TestCase
+
+  def test_run
+    # connection
+    assert_nothing_raised(T2Server::ConnectionError) do
+      @run = T2Server::Run.create($address, $wkf)
+    end
+
+    # test bad state code
+    assert_raise(T2Server::RunStateError) do
+      @run.get_output("out")
+    end
+    assert_raise(T2Server::RunStateError) do
+      @run.wait
+    end
+
+    # test mkdir and ls
+    assert(@run.mkdir("test"))
+    assert_equal(@run.ls, [["test"], []])
+
+    # start, state and wait
+    @run.start
+    assert(@run.running?)
+    assert_nothing_raised(T2Server::RunStateError) do
+      @run.wait
+    end
+
+    # exitcode and output
+    assert_instance_of(Fixnum, @run.exitcode)
+    assert_equal(@run.get_output("Message"), "Hello, World!")
+    assert_raise(T2Server::AccessForbiddenError) do
+      @run.get_output("wrong!")
+    end
+
+    # deletion
+    assert(@run.delete)
+  end
+end

data/test/tc_server.rb

@@ -0,0 +1,71 @@
+# Copyright (c) 2010, The University of Manchester, UK.
+#
+# All rights reserved.
+#
+# Redistribution and use in source and binary forms, with or without
+# modification, are permitted provided that the following conditions are met:
+#
+#  * Redistributions of source code must retain the above copyright notice,
+#    this list of conditions and the following disclaimer.
+#
+#  * Redistributions in binary form must reproduce the above copyright notice,
+#    this list of conditions and the following disclaimer in the documentation
+#    and/or other materials provided with the distribution.
+#
+#  * Neither the names of The University of Manchester nor the names of its
+#    contributors may be used to endorse or promote products derived from this
+#    software without specific prior written permission. 
+#
+# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+# AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+# IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+# ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
+# LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+# CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
+# SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
+# INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
+# CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+# ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
+# POSSIBILITY OF SUCH DAMAGE.
+#
+# Author: Robert Haines
+
+require 't2server'
+
+class TestServer < Test::Unit::TestCase
+
+  def test_server
+    # connection
+    assert_nothing_raised(T2Server::ConnectionError) do
+      @server = T2Server::Server.connect($address)
+    end
+    assert_not_nil(@server)
+    assert_raise(T2Server::ConnectionError) do
+      uri = URI.parse($address)
+      T2Server::Server.connect("http://#{uri.host}:22")
+    end
+
+    # run creation
+    assert_nothing_raised(T2Server::T2ServerError) do
+      @run = @server.create_run($wkf)
+    end
+
+    # capacity
+    limit = @server.run_limit
+    assert_instance_of(Fixnum, limit)
+    assert_raise(T2Server::ServerAtCapacityError) do
+      limit.times do
+        @server.create_run($wkf)
+      end
+    end
+  
+    # deleting
+    assert_nothing_raised(T2Server::T2ServerError) do
+      @run.delete
+    end
+
+    assert_nothing_raised(T2Server::T2ServerError) do
+      @server.delete_all_runs
+    end
+  end
+end

data/test/ts_t2server.rb

@@ -0,0 +1,52 @@
+# Copyright (c) 2010, The University of Manchester, UK.
+#
+# All rights reserved.
+#
+# Redistribution and use in source and binary forms, with or without
+# modification, are permitted provided that the following conditions are met:
+#
+#  * Redistributions of source code must retain the above copyright notice,
+#    this list of conditions and the following disclaimer.
+#
+#  * Redistributions in binary form must reproduce the above copyright notice,
+#    this list of conditions and the following disclaimer in the documentation
+#    and/or other materials provided with the distribution.
+#
+#  * Neither the names of The University of Manchester nor the names of its
+#    contributors may be used to endorse or promote products derived from this
+#    software without specific prior written permission. 
+#
+# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+# AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+# IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+# ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
+# LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+# CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
+# SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
+# INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
+# CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+# ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
+# POSSIBILITY OF SUCH DAMAGE.
+#
+# Author: Robert Haines
+
+require 'test/unit'
+require 't2server'
+
+# get a server address to test - 30 second timeout
+print "\nPlease supply a valid Taverna 2 Server address (leave blank to skip tests): "
+$stdout.flush
+if select([$stdin], [], [], 30)
+  $address = $stdin.gets.chomp
+else
+  puts "\nSkipping tests that require a Taverna 2 Server instance..."
+  $address = ""
+end
+$wkf = File.read("test/workflows/hello.t2flow")
+
+# the testcases to run
+require 'tc_paths'
+if $address != ""
+  require 'tc_server'
+  require 'tc_run'
+end

data/test/workflows/hello.t2flow

@@ -0,0 +1,21 @@
+<workflow xmlns="http://taverna.sf.net/2008/xml/t2flow" version="1" producedBy="taverna-2.2.0"><dataflow id="b9556b39-8656-4a17-bf5c-37de30fe7df3" role="top"><name>Workflow1</name><inputPorts /><outputPorts><port><name>Message</name><annotations /></port></outputPorts><processors><processor><name>Hello</name><inputPorts /><outputPorts><port><name>value</name><depth>0</depth><granularDepth>0</granularDepth></port></outputPorts><annotations /><activities><activity><raven><group>net.sf.taverna.t2.activities</group><artifact>stringconstant-activity</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.activities.stringconstant.StringConstantActivity</class><inputMap /><outputMap><map from="value" to="value" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.stringconstant.StringConstantConfigurationBean xmlns="">
+  <value>Hello, World!</value>
+</net.sf.taverna.t2.activities.stringconstant.StringConstantConfigurationBean></configBean><annotations /></activity></activities><dispatchStack><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig xmlns="">
+  <maxJobs>1</maxJobs>
+</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBounce</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failover</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig xmlns="">
+  <backoffFactor>1.0</backoffFactor>
+  <initialDelay>1000</initialDelay>
+  <maxDelay>5000</maxDelay>
+  <maxRetries>0</maxRetries>
+</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer></dispatchStack><iterationStrategyStack><iteration><strategy /></iteration></iterationStrategyStack></processor></processors><conditions /><datalinks><datalink><sink type="dataflow"><port>Message</port></sink><source type="processor"><processor>Hello</processor><port>value</port></source></datalink></datalinks><annotations><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
+  <annotationAssertions>
+    <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
+      <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
+        <identification>b9556b39-8656-4a17-bf5c-37de30fe7df3</identification>
+      </annotationBean>
+      <date>2010-07-09 15:01:39.283 BST</date>
+      <creators />
+      <curationEventList />
+    </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
+  </annotationAssertions>
+</net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2></annotations></dataflow></workflow>

metadata

@@ -1,13 +1,13 @@
 --- !ruby/object:Gem::Specification 
 name: t2-server
 version: !ruby/object:Gem::Version 
-  hash: 23
+  hash: 27
   prerelease: false
   segments: 
   - 0
+  - 1
   - 0
-  - 4
-  version: 0.0.4
+  version: 0.1.0
 platform: ruby
 authors: 
 - Robert Haines
@@ -15,10 +15,23 @@ autorequire:
 bindir: bin
 cert_chain: []
 
-date: 2010-07-30 00:00:00 +01:00
+date: 2010-09-02 00:00:00 +01:00
 default_executable: 
-dependencies: []
-
+dependencies: 
+- !ruby/object:Gem::Dependency 
+  name: rake
+  prerelease: false
+  requirement: &id001 !ruby/object:Gem::Requirement 
+    none: false
+    requirements: 
+    - - ">="
+      - !ruby/object:Gem::Version 
+        hash: 3
+        segments: 
+        - 0
+        version: "0"
+  type: :development
+  version_requirements: *id001
 description: This gem provides access to the Taverna 2 Server REST interface from Ruby.
 email: rhaines@manchester.ac.uk
 executables: []
@@ -34,8 +47,14 @@ files:
 - bin/delete_all_runs
 - lib/t2server.rb
 - lib/t2server/server.rb
+- lib/t2server/exceptions.rb
 - lib/t2server/xml.rb
 - lib/t2server/run.rb
+- test/tc_server.rb
+- test/tc_paths.rb
+- test/tc_run.rb
+- test/workflows/hello.t2flow
+- test/ts_t2server.rb
 - README.rdoc
 - LICENCE
 has_rdoc: true
@@ -72,5 +91,5 @@ rubygems_version: 1.3.7
 signing_key: 
 specification_version: 3
 summary: Support for interacting with Taverna 2 Server.
-test_files: []
-
+test_files: 
+- test/ts_t2server.rb