synaptical 0.0.1.pre.beta1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +7 -0
- data/.gitignore +11 -0
- data/.rspec +3 -0
- data/.ruby-gemset +1 -0
- data/.ruby-version +1 -0
- data/.travis.yml +7 -0
- data/Gemfile +14 -0
- data/Gemfile.lock +47 -0
- data/README.md +101 -0
- data/Rakefile +96 -0
- data/bin/console +15 -0
- data/bin/setup +8 -0
- data/lib/synaptical.rb +18 -0
- data/lib/synaptical/architect/perceptron.rb +32 -0
- data/lib/synaptical/connection.rb +31 -0
- data/lib/synaptical/cost/mse.rb +21 -0
- data/lib/synaptical/layer.rb +143 -0
- data/lib/synaptical/layer_connection.rb +74 -0
- data/lib/synaptical/network.rb +125 -0
- data/lib/synaptical/neuron.rb +312 -0
- data/lib/synaptical/serializer/json.rb +81 -0
- data/lib/synaptical/squash/logistic.rb +27 -0
- data/lib/synaptical/squash/tanh.rb +27 -0
- data/lib/synaptical/trainer.rb +89 -0
- data/lib/synaptical/version.rb +5 -0
- data/synaptical.gemspec +29 -0
- metadata +110 -0
checksums.yaml
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---
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SHA256:
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metadata.gz: 2eb79f8db08a2545b01bee1be288ba3f3b0887cf5dab92abbff912dee9206726
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data.tar.gz: ffc9a05fff7c76dfbf8e5c1d4c5b24d5b238320ae23fa5ef885da1c0e56ce336
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SHA512:
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metadata.gz: 4d60328ad93e877c08df009a8057b87085119d234db531fdb43e82ef58be77305bb6d9620bc4a2dc9c33e2bdc61416fb5d7c2fc8bb2658d65b1a3aaa8e2b0b29
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data.tar.gz: 98c8d2cc964b1f2ba6f396c00b711227230fa03669dbe8083334f70ce0ba7dd09ca2141e54c931685514a183b0ca8fc73b1e58aef947cc8c4ad47004b58a5e10
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data/.gitignore
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data/.rspec
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data/.ruby-gemset
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synaptical
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data/.ruby-version
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2.5.1
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data/.travis.yml
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data/Gemfile
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# frozen_string_literal: true
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source 'https://rubygems.org'
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git_source(:github) { |repo_name| "https://github.com/#{repo_name}" }
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# Specify your gem's dependencies in synaptical.gemspec
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gemspec
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group :development do
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gem 'benchmark-ips'
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gem 'benchmark-memory'
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gem 'hotch'
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end
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data/Gemfile.lock
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PATH
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remote: .
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specs:
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synaptical (0.0.1.pre.beta1)
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GEM
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remote: https://rubygems.org/
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specs:
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allocation_tracer (0.6.3)
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benchmark-ips (2.7.2)
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benchmark-memory (0.1.2)
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memory_profiler (~> 0.9)
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diff-lcs (1.3)
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hotch (0.5.0)
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allocation_tracer (~> 0.6.3)
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stackprof (~> 0.2.10)
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memory_profiler (0.9.11)
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rake (10.5.0)
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rspec (3.7.0)
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rspec-core (~> 3.7.0)
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rspec-expectations (~> 3.7.0)
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rspec-mocks (~> 3.7.0)
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rspec-core (3.7.1)
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rspec-support (~> 3.7.0)
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rspec-expectations (3.7.0)
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diff-lcs (>= 1.2.0, < 2.0)
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rspec-support (~> 3.7.0)
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rspec-mocks (3.7.0)
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diff-lcs (>= 1.2.0, < 2.0)
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rspec-support (~> 3.7.0)
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rspec-support (3.7.1)
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stackprof (0.2.12)
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PLATFORMS
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ruby
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DEPENDENCIES
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benchmark-ips
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benchmark-memory
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bundler (~> 1.16)
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hotch
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rake (~> 10.0)
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rspec (~> 3.0)
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synaptical!
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BUNDLED WITH
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1.16.3
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data/README.md
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# Synaptical
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Synaptical is a Ruby port of [synaptic.js](https://github.com/cazala/synaptic)
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**NOTE: This is work in progress and some componets of synaptic.js are still missing**
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## Installation
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Add this line to your application's Gemfile:
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```ruby
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gem 'synaptical'
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```
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And then execute:
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$ bundle
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Or install it yourself as:
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$ gem install synaptical
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## Usage
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Usage is identical to [synaptic.js](https://github.com/cazala/synaptic).
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Example network trained to solve a XOR gate:
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```ruby
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input_layer = Synaptical::Layer.new(2)
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hidden_layer = Synaptical::Layer.new(3)
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output_layer = Synaptical::Layer.new(1)
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input_layer.project(hidden_layer)
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hidden_layer.project(output_layer)
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network = Synaptical::Network.new(
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input: input_layer,
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hidden: [hidden_layer],
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output: output_layer
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)
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learning_rate = 0.3
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10_000.times do
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network.activate([0, 0])
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network.propagate(learning_rate, [0])
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network.activate([0, 1])
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network.propagate(learning_rate, [1])
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network.activate([1, 0])
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network.propagate(learning_rate, [1])
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network.activate([1, 1])
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network.propagate(learning_rate, [0])
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end
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network.activate([0, 0])
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# => [0.00020797967275049887]
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network.activate([0, 1])
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# => [0.9991989909682668]
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network.activate([1, 0])
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# => [0.9992882541963027]
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network.activate([1, 1])
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# => [0.0011764423621223423]
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```
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or create the network with the Perceptron architect and the Trainer:
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```ruby
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network = Synaptical::Architect::Perceptron.new(2, 3, 1)
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trainer = Synaptical::Trainer.new(network)
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trainer.train([
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{ input: [0, 0], output: [0] },
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{ input: [0, 1], output: [1] },
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{ input: [1, 0], output: [1] },
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{ input: [1, 1], output: [0] }
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])
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network.activate([0, 0])
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# => [0.04564830744951351]
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network.activate([0, 1])
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# => [0.9590894310802323]
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network.activate([1, 0])
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# => [0.9112358846059638]
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network.activate([1, 1])
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# => [0.0832359653922508]
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```
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## Development
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After checking out the repo, run `bin/setup` to install dependencies. Then, run `rake spec` to run the tests. You can also run `bin/console` for an interactive prompt that will allow you to experiment.
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To install this gem onto your local machine, run `bundle exec rake install`. To release a new version, update the version number in `version.rb`, and then run `bundle exec rake release`, which will create a git tag for the version, push git commits and tags, and push the `.gem` file to [rubygems.org](https://rubygems.org).
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## Contributing
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Bug reports and pull requests are welcome on GitHub at https://github.com/wallin/synaptical.
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data/Rakefile
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# frozen_string_literal: true
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require 'bundler/gem_tasks'
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require 'rspec/core/rake_task'
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require 'synaptical'
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RSpec::Core::RakeTask.new(:spec)
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task default: :spec
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def create_network
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input_layer = Synaptical::Layer.new(2)
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hidden_layer = Synaptical::Layer.new(3)
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output_layer = Synaptical::Layer.new(1)
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input_layer.project(hidden_layer)
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hidden_layer.project(output_layer)
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Synaptical::Network.new(
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input: input_layer, hidden: [hidden_layer], output: output_layer
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)
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end
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def train(network)
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learning_rate = 0.3
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network.activate([0, 0])
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network.propagate(learning_rate, [0])
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network.activate([0, 1])
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network.propagate(learning_rate, [1])
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network.activate([1, 0])
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network.propagate(learning_rate, [1])
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network.activate([1, 1])
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network.propagate(learning_rate, [0])
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end
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def activate(network)
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network.activate([rand(2), rand(2)])
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end
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task :benchmark do
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require 'benchmark/ips'
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require 'benchmark/memory'
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network = create_network
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train = lambda do |x|
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x.report('training') { train(network) }
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x.compare!
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end
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activate = lambda do |x|
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x.report('activate') { activate(network) }
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x.compare!
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end
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Benchmark.ips(&train)
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Benchmark.memory(&train)
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Benchmark.ips(&activate)
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Benchmark.memory(&activate)
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end
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namespace :profile do
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require 'hotch'
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require 'hotch/memory'
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task :training do
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network = create_network
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Hotch() do
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10_000.times do
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train(network)
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end
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end
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Hotch.memory do
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10_000.times do
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train(network)
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end
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end
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end
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task :activate do
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network = create_network
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10_000.times { train(network) }
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Hotch() do
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10_000.times { activate(network) }
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end
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Hotch.memory do
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10_000.times { activate(network) }
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end
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end
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end
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data/bin/console
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#!/usr/bin/env ruby
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# frozen_string_literal: true
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require 'bundler/setup'
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require 'synaptical'
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# You can add fixtures and/or initialization code here to make experimenting
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# with your gem easier. You can also use a different console, if you like.
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# (If you use this, don't forget to add pry to your Gemfile!)
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# require "pry"
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# Pry.start
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require 'irb'
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IRB.start(__FILE__)
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data/bin/setup
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data/lib/synaptical.rb
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# frozen_string_literal: true
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%w[
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synaptical/squash/logistic
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synaptical/squash/tanh
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synaptical/connection
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synaptical/layer
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synaptical/layer_connection
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synaptical/network
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synaptical/neuron
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synaptical/trainer
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synaptical/version
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synaptical/architect/perceptron
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synaptical/cost/mse
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synaptical/serializer/json
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].each(&method(:require))
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module Synaptical; end
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# frozen_string_literal: true
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module Synaptical
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module Architect
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class Perceptron < Network
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# Creates a new perceptron network
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# @param *layers [Integer] Each integer in the args represent a layer of that size
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#
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# @return [Synaptical::Network] The created network
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def initialize(*layers)
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raise ArgumentError, 'not enough layers (minimum 3)' if layers.size < 3
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input = Synaptical::Layer.new(layers.shift)
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output = Synaptical::Layer.new(layers.pop)
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previous = input
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hidden = layers.map do |size|
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Synaptical::Layer.new(size).tap do |layer|
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previous.project(layer)
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previous = layer
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end
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end
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previous.project(output)
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super(
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input: input,
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hidden: hidden,
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output: output
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)
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end
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end
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end
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end
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# frozen_string_literal: true
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module Synaptical
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# Representation of a connection between two neurons
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class Connection
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attr_reader :id, :from, :to, :gain, :gater
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attr_accessor :weight
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# Creates a connection between two neurons
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# @param from [Synaptical::Neuron] First neuron
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# @param to [Synaptical::Neuron] Second neuron
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# @param weight = nil [Float] connection weight
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def initialize(from, to, weight = nil)
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@id = self.class.uid
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@from = from
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@to = to
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@weight = weight.nil? ? (rand * 0.2 - 0.1) : weight
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@gain = 1.0
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end
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class << self
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attr_reader :connections
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def uid
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+
@connections += 1
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26
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+
end
|
27
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+
end
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28
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+
|
29
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+
@connections = 0
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+
end
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31
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+
end
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@@ -0,0 +1,21 @@
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1
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+
# frozen_string_literal: true
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2
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+
|
3
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+
module Synaptical
|
4
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+
module Cost
|
5
|
+
# Mean square error
|
6
|
+
module Mse
|
7
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+
class << self
|
8
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+
# Calculates mean square error for a series of results
|
9
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+
# @param target [Array<Numeric>] Desired values
|
10
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+
# @param output [Array<Numeric>] Output values from prediction
|
11
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+
#
|
12
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+
# @return [Float] Combined mean square error
|
13
|
+
def call(target, output)
|
14
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+
mse = 0.0
|
15
|
+
target.zip(output).each { |t, o| mse += (t - o)**2 }
|
16
|
+
mse.fdiv(output.size)
|
17
|
+
end
|
18
|
+
end
|
19
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+
end
|
20
|
+
end
|
21
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+
end
|
@@ -0,0 +1,143 @@
|
|
1
|
+
# frozen_string_literal: true
|
2
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+
|
3
|
+
module Synaptical
|
4
|
+
# Representation of a layer in a network
|
5
|
+
class Layer
|
6
|
+
CONNECTION_TYPE = {
|
7
|
+
ALL_TO_ALL: 'ALL TO ALL',
|
8
|
+
ONE_TO_ONE: 'ONE TO ONE',
|
9
|
+
ALL_TO_ELSE: 'ALL TO ELSE'
|
10
|
+
}.freeze
|
11
|
+
|
12
|
+
GATE_TYPE = {
|
13
|
+
INPUT: 'INPUT',
|
14
|
+
OUTPUT: 'OUTPUT',
|
15
|
+
ONE_TO_ONE: 'ONE TO ONE'
|
16
|
+
}.freeze
|
17
|
+
|
18
|
+
attr_reader :list, :connected_to, :size
|
19
|
+
|
20
|
+
# Creates a new layer with a given size
|
21
|
+
# @param size [Integer] Size of layer
|
22
|
+
def initialize(size)
|
23
|
+
@size = size
|
24
|
+
@connected_to = []
|
25
|
+
@list = Array.new(size).map { Synaptical::Neuron.new }
|
26
|
+
end
|
27
|
+
|
28
|
+
# Activates the neurons in the layer
|
29
|
+
# @param input [Array<Numeric>] Array of inputs with same size as the layer
|
30
|
+
#
|
31
|
+
# @raise [ArgumentError] if input size mismatch layer size
|
32
|
+
#
|
33
|
+
# @return [Array<Numeric>] Array of output values with same size as the layer
|
34
|
+
def activate(input = nil)
|
35
|
+
if input.nil?
|
36
|
+
list.map(&:activate)
|
37
|
+
else
|
38
|
+
raise ArgumentError unless input.size == size
|
39
|
+
list.zip(input).map { |neuron, value| neuron.activate(value) }
|
40
|
+
end
|
41
|
+
end
|
42
|
+
|
43
|
+
# Propagates the error on all the neurons of the layer
|
44
|
+
# @param rate [Float] Learning rate
|
45
|
+
# @param target = nil [Array<Numeric>] Target value
|
46
|
+
#
|
47
|
+
# @raise [ArgumentError] if target size mismatch layer size
|
48
|
+
def propagate(rate, target = nil)
|
49
|
+
if target.nil?
|
50
|
+
list.each { |neuron| neuron.propagate(rate) }
|
51
|
+
else
|
52
|
+
raise ArgumentError unless target.size == size
|
53
|
+
list.zip(target).each { |neuron, value| neuron.propagate(rate, value) }
|
54
|
+
end
|
55
|
+
end
|
56
|
+
|
57
|
+
# Projects a connection from this layer to another one
|
58
|
+
# @param layer [Synaptical::Layer, Synaptical::Network] Network/Layer to project to
|
59
|
+
# @param type = nil [type] [description]
|
60
|
+
# @param weight = nil [type] [description]
|
61
|
+
#
|
62
|
+
# @raise [ArgumentError] if layer is already connected
|
63
|
+
def project(layer, type = nil, weight = nil)
|
64
|
+
layer = layer.layers.input if layer.is_a?(Network)
|
65
|
+
|
66
|
+
raise ArgumentError if connected(layer)
|
67
|
+
|
68
|
+
LayerConnection.new(self, layer, type, weight)
|
69
|
+
end
|
70
|
+
|
71
|
+
# Gates a connection between two layers
|
72
|
+
# @param conntection [LayerConnection] Layer connection
|
73
|
+
# @param type [type] [description]
|
74
|
+
def gate(_connection, _type)
|
75
|
+
raise 'TODO'
|
76
|
+
end
|
77
|
+
|
78
|
+
# Returns wether the whole layer is self-connected or not
|
79
|
+
#
|
80
|
+
# @return [Boolean] true if self-connected, false otherwise
|
81
|
+
def selfconnected?
|
82
|
+
list.all?(&:selfconnected?)
|
83
|
+
end
|
84
|
+
|
85
|
+
# Returns whether the layer is connected to another layer
|
86
|
+
# @param layer [Synaptical::Layer] Other layer
|
87
|
+
#
|
88
|
+
# @return [Boolean] true if connected to the other layer, false otherwise
|
89
|
+
def connected(layer)
|
90
|
+
# Check if ALL to ALL connection
|
91
|
+
connections = 0
|
92
|
+
list.each do |from|
|
93
|
+
layer.list.each do |to|
|
94
|
+
connected = from.connected(to)
|
95
|
+
connections += 1 if connected&.type == :projected
|
96
|
+
end
|
97
|
+
end
|
98
|
+
|
99
|
+
return Layer::CONNECTION_TYPE[:ALL_TO_ALL] if connections == size * layer.size
|
100
|
+
|
101
|
+
# Check if ONE to ONE connection
|
102
|
+
connections = 0
|
103
|
+
list.each_with_index do |from, idx|
|
104
|
+
to = layer.list[idx]
|
105
|
+
connected = from.connected(to)
|
106
|
+
connections += 1 if connected&.type == :projected
|
107
|
+
end
|
108
|
+
|
109
|
+
return Layer::CONNECTION_TYPE[:ONE_TO_ONE] if connections == size
|
110
|
+
|
111
|
+
false
|
112
|
+
end
|
113
|
+
|
114
|
+
# Clears all the neurons in the layer
|
115
|
+
def clear
|
116
|
+
list.each(&:clear)
|
117
|
+
end
|
118
|
+
|
119
|
+
# Resets all the neurons in the layer
|
120
|
+
def reset
|
121
|
+
list.each(&:reset)
|
122
|
+
end
|
123
|
+
|
124
|
+
# Returns all the neurons in the layer
|
125
|
+
#
|
126
|
+
# @return [Array<Synaptical::Neuron>] List of neurons in the layer
|
127
|
+
alias neurons list
|
128
|
+
|
129
|
+
# Adds a neuron to the layer
|
130
|
+
# @param neuron [Synaptical::Neuron] The new neuron
|
131
|
+
def add(neuron = Neuron.new)
|
132
|
+
list << neuron
|
133
|
+
size += 1
|
134
|
+
end
|
135
|
+
|
136
|
+
# Configure layer options
|
137
|
+
#
|
138
|
+
# @return [Hash] Hash with options options
|
139
|
+
def set(_options)
|
140
|
+
raise 'TODO'
|
141
|
+
end
|
142
|
+
end
|
143
|
+
end
|