symbiont 0.1.7 → 0.1.8

data/app/config/database.rb

@@ -1,9 +0,0 @@
-require 'data_mapper'
-
-require_relative '../models/product'
-require_relative '../models/study'
-require_relative '../models/plan'
-require_relative '../models/user'
-
-DataMapper::setup(:default, "sqlite3://#{Dir.pwd}/app.db")
-DataMapper.finalize.auto_upgrade!

data/app/models/plan.rb

@@ -1,10 +0,0 @@
-class Plan
-  include DataMapper::Resource
-  
-  property :id, Serial
-  property :study, String
-  property :plan_name, String
-  property :plan_description, String
-  property :created_at, DateTime, :default => DateTime.now
-  property :updated_at, DateTime
-end

data/app/models/product.rb

@@ -1,10 +0,0 @@
-class Product
-  include DataMapper::Resource
-  
-  property :id, Serial
-  property :product_id, String
-  property :name, String
-  property :description, Text
-  property :created_at, DateTime, default: DateTime.now
-  property :updated_at, DateTime
-end

data/app/models/study.rb

@@ -1,11 +0,0 @@
-class Study
-  include DataMapper::Resource
-  
-  property :id, Serial
-  property :study_name, String
-  property :protocol, String
-  property :product, String
-  property :phase, String
-  property :created_at, DateTime, default: DateTime.now
-  property :updated_at, DateTime
-end

data/app/models/user.rb

@@ -1,13 +0,0 @@
-class User
-  include DataMapper::Resource
-  
-  property :id, Serial
-  property :loginname, String
-  property :firstname, String
-  property :lastname, String
-  property :level, String
-  property :role, String
-  property :password, String
-  property :created_at, DateTime, default: DateTime.now
-  property :updated_at, DateTime
-end

data/app/public/css/style.css

@@ -1,138 +0,0 @@
-header {
-	text-align: center;
-	background: #ccc;
-	border: 1px solid;
-}
-
-header h1 {
-	font: 42px normal Georgia, "Times New Roman", Times, serif;
-}
-
-header h1 a {
-	color: #0B610B;
-	text-decoration: none;
-}
-
-header h2 {
-	color: #38610B;
-	font-style: italic;
-}
-
-footer {
-	clear: both;
-	text-align: center;
-}
-
-.indent {
-	margin: 10px 0 40px 25px;
-}
-
-.group {
-	padding: 10px;
-	margin: 10px 0 40px 25px;
-	border: 1px solid;
-	background-color: #E6E6E6;
-}
-
-#navigate {
-	float: right;
-	margin-right: 50px;
-}
-
-input:focus {
-	border:5px solid yellow;
-}
-
-.notice {
-	color: green;
-}
-
-.error {
-	color: red;
-}
-
-table.entity {
-	margin: 20px;
-	color: #666;
-	font-size: 12px;
-	font-family: Arial, Helvetica, sans-serif;
-	background: #eaebec;
-	border: #ccc 1px solid;
-	border-radius: 3px;
-	box-shadow: 0 1px 2px #d1d1d1;
-	text-shadow: 1px 1px 0px #fff;
-	-moz-border-radius: 3px;
-	-moz-box-shadow: 0 1px 2px #d1d1d1;
-	-webkit-border-radius: 3px;
-	-webkit-box-shadow: 0 1px 2px #d1d1d1;
-}
-
-table.entity caption {
-	font-size: 16px;
-}
-
-table.entity th {
-	padding: 21px 25px 22px 25px;
-	border-bottom: 1px solid #e0e0e0;
-	border-top: 1px solid #fafafa;
-	background: #ededed;
-	background: -webkit-gradient(linear, left top, left bottom, from(#ededed), to(#ebebeb));
-	background: -moz-linear-gradient(top, #ededed, #ebebeb); 
-}
-
-table.entity th:first-child {
-	padding-left: 20px;
-	text-align: left;
-}
-
-table.entity tr {
-	padding-left: 20px;
-	text-align: center;
-}
-
-table.entity tr:first-child th:first-child {
-	-moz-border-radius-topleft: 3px;
-	-webkit-border-top-left-radius: 3px;
-	border-top-left-radius: 3px;
-}
-
-table.entity tr:first-child th:last-child {
-	-moz-border-radius-topright: 3px;
-	-webkit-border-top-right-radius: 3px;
-	border-top-right-radius: 3px;
-}
-
-table.entity tr:last-child td { border-bottom: 0 }
-
-table.entity tr:last-child td:first-child {
-	-moz-border-radius-bottomleft: 3px;
-	-webkit-border-bottom-left-radius: 3px;
-	border-bottom-left-radius: 3px;
-}
-
-table.entity tr:last-child td:last-child {
-	-moz-border-radius-bottomright: 3px;
-	-webkit-border-bottom-right-radius: 3px;
-	border-bottom-right-radius: 3px;
-}
-
-table.entity tr:hover td {
-	background: #f2f2f2;
-	background: -webkit-gradient(linear, left top, left bottom, from(#f2f2f2), to(#f0f0f0));
-	background: -moz-linear-gradient(top, #f2f2f2, #f0f0f0);
-}
-
-table.entity tr td {
-	padding: 18px;
-	border-bottom: 1px solid #e0e0e0; border-left: 1px solid #e0e0e0; border-top: 1px solid #ffffff;
-	background: #fafafa;
-	background: -webkit-gradient(linear, left top, left bottom, from(#fbfbfb), to(#fafafa));
-	background: -moz-linear-gradient(top, #fbfbfb, #fafafa);
-}
-
-table.entity tr td:first-child {
-	padding-left: 20px;
-	border-left: 0;
-	text-align: left;
-}
-

data/app/views/create_plan.erb

@@ -1,21 +0,0 @@
-<section id="create_plan">
-	<p><span id="navigate"><a href="entity_list">Back to List</a> | <a href="test_database">Logout</a></span></p>
-	<form id="planFormID" class="planFormClass" name="planFormName" method="post" action="/create_plan">
-		<p><label id="lbl_planName" class="Fld" for="planName">Plan Name:</label><br />
-		<input id="planName" name="planName" class="Fld" size="40" type="text"/></p>
-		
-		<p><label id="lbl_planStudy" class="Fld" for="planStudy">Study:</label><br />
-		<select id="planStudy" name="planStudy">
-			<option value="blank"></option>
-			<% @studies = Study.all %>
-			<% @studies.each do |study| %>
-				<option value="<%= study.study_name %>"><%= study.study_name %></option>
-			<% end %>
-		</select>
-		
-		<p><label id="lbl_planDescription" class="Fld" for="planDescription">Description:</label><br />
-		<input id="planDescription" name="planDescription" class="Fld" size="40" type="text"/></p>
-		
-		<p><input id="btnSubmit" name="btnSubmit" class="btn" type="submit" value="Create Plan"></p>
-	</form>
-</section>

data/app/views/create_product.erb

@@ -1,15 +0,0 @@
-<section id="create_product">
-	<span id="navigate"><a href="entity_list">Back to List</a> | <a href="test_database">Logout</a></span></p>
-	<form id="productFormID" class="productFormClass" name="productFormName" method="post" action="/create_product">
-		<p><label id="lbl_productId" class="Fld" for="productId">Product ID:</label><br />
-		<input id="productId" name="productId" class="Fld" size="40" type="text"/></p>
-		
-		<p><label id="lbl_productName" class="Fld" for="productName">Name:</label><br />
-		<input id="productName" name="productName" class="Fld" size="40" type="text"/></p>
-		
-		<p><label id="lbl_productDescription" class="Fld" for="productDescription">Description:</label><br />
-		<input id="productDescription" name="productDescription" class="Fld" size="40" type="text"/></p>
-		
-		<p><input id="btnSubmit" name="btnSubmit" class="btn" type="submit" value="Create Product"></p>
-	</form>
-</section>

data/app/views/create_study.erb

@@ -1,24 +0,0 @@
-<section id="create_study">
-		<span id="navigate"><a href="entity_list">Back to List</a> | <a href="test_database">Logout</a></span></p>
-		<form id="studyFormID" clas="studyFormClass" name="studyFormName" method="post" action="/create_study">
-			<p><label id="lbl_studyName" class="Fld" for="studyName">Study Name:</label><br />
-			<input id="studyName" name="studyName" class="Fld" size="40" type="text"/></p>
-			
-			<p><label id="lbl_studyProtocol" class="Fld" for="studyProtocol">Protocol:</label><br />
-			<input id="studyProtocol" name="studyProtocol" class="Fld" size="40" type="text"/></p>
-			
-			<p><label id="lbl_studyProduct" class="Fld" for="studyProduct">Product:</label><br />
-			<select id="studyProduct" name="studyProduct">
-				<option value="blank"></option>
-				<% @products = Product.all %>
-				<% @products.each do |product| %>
-					<option value="<%= product.name %>"><%= product.name %></option>
-				<% end %>
-			</select>
-			
-			<p><label id="lbl_studyPhase" class="Fld" for="studyPhase">Phase:</label><br />
-			<input id="studyPhase" name="studyPhase" class="Fld" size="40" type="text"/></p>
-			
-			<p><input id="btnSubmit" name="btnSubmit" class="btn" type="submit" value="Create Study"></p>
-		</form>
-</section>

data/app/views/create_user.erb

@@ -1,60 +0,0 @@
-<script>
-  function showPasswordFields() {
-    document.getElementById('password_area').style.display = '';
-    document.getElementById('SetPasswordLink').style.display = 'none';
-  }
-
-  function showCapabilities() {
-    document.getElementById('capabilities_area').style.display = '';
-    document.getElementById('RevealCapabilities').style.display = 'none';
-  }
-</script>
-
-<section id="create_user">
-	<span id="navigate"><a href="entity_list">Back to List</a> | <a href="test_database">Logout</a></span></p>
-	<form id="userFormID" class="userFormClass" name="userFormName" method="post" action="/create_user">
-		<p><label id="lbl_loginName" class="Fld" for="loginName">Login Name:</label><br />
-		<input id="loginName" name="loginName" class="Fld" size="40" type="text"/></p>
-		
-		<p><label id="lbl_firstName" class="Fld" for="firstName">First Name:</label><br />
-		<input id="firstName" name="firstName" class="Fld" size="40" type="text"/></p>
-		
-		<p><label id="lbl_lastName" class="Fld" for="lastName">Last Name:</label><br />
-		<input id="lastName" name="lastName" class="Fld" size="40" type="text"/></p>
-		
-		<p><label id="lbl_level" class="Fld" for="level">Maximum Level:</label><br />
-		<select name="level" id="level" class="sel_list_class">
-			<option value="option1">Expert</option>
-			<option value="option2">Advanced</option>
-			<option value="option3">Basic</option>
-		</select>
-		
-		<p id="SetPasswordLink"><a href="#" onclick="showPasswordFields();">Set Password</a></p>
-		
-		<div id="password_area" style="display:none;">
-			<p><label id="lbl_password" class="Fld" for="password">Password:</label><br />
-			<input id="password" name="password" class="Fld" size="40" type="password"/></p>
-			<p><label id="lbl_confirmPassword" class="Fld" for="confirmPassword">Confirm Password:</label><br />
-			<input id="confirmPassword" name="confirmPassword" class="Fld" size="40" type="password"/></p>
-		</div>
-		
-		<p id="RevealCapabilities"><a href="#" onclick="showCapabilities();">Save Current Information</a></p>
-		
-		<div id="capabilities_area" style="display:none;">
-			<p><label id="lbl_role" class="Fld" for="role">Role:</label><br />
-			<select name="role" id="role" class="sel_list_class">
-				<option value="option1">Administrator</option>
-				<option value="option2">Clinical Administrator</option>
-				<option value="option3">Project Sponsor</option>
-			</select>
-			
-			<p><strong>Additional Capabilities:</strong></p>
-			<input id="can_edit" name="can_edit" class="cb_class" type="checkbox" value="1"/> Can Edit Reports<br />
-			<input id="can_export" name="can_export" class="cb_class" type="checkbox" value="2"/> Can Export Report Data<br />
-			<input id="can_access_api" name="can_access_api" class="cb_class" type="checkbox" value="3"/> Can Access Web Services<br />
-			<input id="can_administrate" name="can_administrate" class="cb_class" type="checkbox" value="4"/> Can Administrate
-		</div>
-		
-		<p><input id="btnSubmit" name="btnSubmit" class="btn" type="submit" value="Create User"></p>
-	</form>
-</section>

data/app/views/db_plans.erb

@@ -1,31 +0,0 @@
-<section id="plans">
-	
-	<p><a href="create_plan">Add New Plan</a> <span id="navigate"><a href="entity_list">Back to List</a> | <a href="test_database">Logout</a></span></p>
-	
-	<hr/>
-	
-	<% if @plans.count > 0 %>
-		<table class="entity">
-			<caption>
-				<strong>Current Plans</strong>
-			</caption>
-			<thead>
-				<th id="planName">Plan Name</th>
-				<th id="planStudy">Associated Study</th>
-				<th id="planDescription">Plan Description</th>
-			</thead>
-			<tbody>
-				<% @plans.each do |plan| %>
-					<tr>
-						<td headers="planName"><%= plan.plan_name %></td>
-						<td headers="planStudy"><%= plan.study %></td>
-						<td headers="planDescription"><%= plan.plan_description %></td>
-					</tr>
-				<% end %>
-			</tbody>
-		</table>
-	<% else %>
-		<p>No plans in database.</p>
-	<% end %>
-	
-</section>

data/app/views/db_products.erb

@@ -1,29 +0,0 @@
-<section id="products">
-	<p><a href="create_product">Add New Product</a> <span id="navigate"><a href="entity_list">Back to List</a> | <a href="test_database">Logout</a></span></p>
-	
-	<hr/>
-	
-	<% if @products.length > 0 %>
-		<table class="entity">
-			<caption>
-				<strong>Current Products</strong>
-			</caption>
-			<thead>
-				<th id="productID">Product ID</th>
-				<th id="productName">Product Name</th>
-				<th id="productDescription">Product Description</th>
-			</thead>
-			<tbody>
-				<% @products.each do |product| %>
-					<tr>
-						<td headers="productID"><%= product.product_id %></td>
-						<td headers="productName"><%= product.name %></td>
-						<td headers="productDescription"><%= product.description %></td>
-					</tr>
-				<% end %>
-			</tbody>
-		</table>
-	<% else %>
-		<p>No products in database.</p>
-	<% end %>
-</section>

data/app/views/db_studies.erb

@@ -1,33 +0,0 @@
-<section id="studies">
-	
-	<p><a href="create_study">Add New Study</a> <span id="navigate"><a href="entity_list">Back to List</a> | <a href="test_database">Logout</a></span></p>
-	
-	<hr/>
-	
-	<% if @studies.length > 0 %>
-		<table class="entity">
-			<caption>
-				<strong>Current Studies</strong>
-			</caption>
-			<thead>
-				<th id="studyName">Study Name</th>
-				<th id="studyProduct">Associated Product</th>
-				<th id="studyPhase">Study Phase</th>
-				<th id="studyProtocol">Study Protocol</th>
-			</thead>
-			<tbody>
-				<% @studies.each do |study| %>
-					<tr>
-						<td headers="studyName"><%= study.study_name %></td>
-						<td headers="studyProduct"><%= study.product %></td>
-						<td headers="studyPhase"><%= study.phase %></td>
-						<td headers="studyProtocol"><%= study.protocol %></td>
-					</tr>
-				<% end %>
-			</tbody>
-		</table>
-	<% else %>
-		<p>No studies in database.</p>
-	<% end %>
-	
-</section>

data/app/views/db_users.erb

@@ -1,23 +0,0 @@
-<section id="users">
-	<p><a href="create_user">Add New User</a> <span id="navigate"><a href="entity_list">Back to List</a> | <a href="test_database">Logout</a></span></p>
-	
-	<hr />
-	
-	<% if @users.count > 0 %>
-		<table class="entity">
-			<thead>
-				<th>Current Users</th>
-			</thead>
-			<tbody>
-				<% @users.each do |user| %>
-					<tr>
-						<td><%= user.firstname + " " + user.lastname %></td>
-						<td><%= user.loginname %></td>
-					</tr>
-				<% end %>
-			</tbody>
-		</table>
-	<% else %>
-		<p>No users in database.</p>
-	<% end %>
-</section>