swissparser 0.5.1

data/README.txt

@@ -0,0 +1,32 @@
+= SwissParser
+   by Paradigmatic
+   http://github.com/paradigmatic/SwissParser
+
+== DESCRIPTION:
+
+Simple DSL to define parser for flat files formats common in biofinformatics.
+
+== FEATURES:
+
+* Defines parsers with a declarative syntax.
+* The whole parsing workflow is configurable.
+* The user can create new parsers by extending existing parsers.
+
+== SYNOPSIS:
+
+  See examples
+
+== REQUIREMENTS:
+
+Only prue standard ruby. Tested with version 1.8.7 only but should work with JRuby and others.
+
+If you want to participate in SwissParser developpement, you will need the gem *bones*.
+
+== INSTALL:
+
+Soon available as a gem...
+
+== LICENSE:
+
+Distributed under GPLv3. See included LICENSE file.
+

data/Rakefile

@@ -0,0 +1,23 @@
+begin
+  require 'bones'
+rescue LoadError
+  abort '### Please install the "bones" gem ###'
+end
+
+ensure_in_path 'lib'
+require 'swiss_parser'
+
+#task :default => 'test:run'
+#task 'gem:release' => 'test:run'
+
+Bones {
+  name  'swissparser'
+  authors  'paradigmatic'
+  email  'paradigmatic@streum.org'
+  url  'http://github.com/paradigmatic/SwissParser'
+  version  Swiss::VERSION
+  ignore_file  '.gitignore'
+  rdoc.exclude ["examples/data"]
+}
+
+# EOF

data/examples/data/EColPositives_noTAT.bas

@@ -0,0 +1,520 @@
+N Serine protease espP precursor
+T SIG
+C 55
+S MNKIYSLKYSHITGGLIAVSELSGRVSSRATGKKKHKRILALCFLGLLQSYSFASQMDISNFYIRDYMDF
+/
+N Serine protease pet precursor
+T SIG
+C 52
+S MNKIYSIKYSAATGGLIAVSELAKKVICKTNRKISAALLSLAVISYTNIIAANMDISKAWARDYLDLAQN
+/
+N Hemoglobin-binding protease hbp precursor
+T SIG
+C 52
+S MNRIYSLRYSAVARGFIAVSEFARKCVHKSVRRLCFPVLLLIPVLFSAGSAGTVNNELGYQLFRDFAENK
+/
+N Alkaline phosphatase precursor
+T SIG
+C 21
+S MKQSTIALALLPLLFTPVTKARTPEMPVLENRAAQGDITAPGGARRLTGDTAALRDSLSDKPAKNIILLI
+/
+N L-asparaginase 2 precursor
+T SIG
+C 22
+S MEFFKKTALAALVMGFSGAALALPNITILATGGTIAGGGDSATKSNYTVGVGVENLVNAVPQLKDIANVK
+/
+N Beta-lactamase precursor
+T SIG
+C 19
+S MFKTTLCALLITASCSTFAAPQQINDIVHRTITPLIEQQKIPGMAVAVIYGKPYYFTWGYADIAKKQPVT
+/
+N L-arabinose-binding periplasmic protein precursor
+T SIG
+C 23
+S MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAKDLGFEVIKIAVPDGEKTLN
+/
+N D-ribose-binding periplasmic protein precursor
+T SIG
+C 25
+S MNMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKADKLGYNLVVLDSQNNPAKE
+/
+N Outer membrane protein tolC precursor
+T SIG
+C 22
+S MKKLLPILIGLSLSGFSSLSQAENLMQVYQQARLSNPELRKSAADRDAAFKINEARSPLLPQLGLGADYT
+/
+N Maltoporin precursor
+T SIG
+C 25
+S MMITLRKLPLAVAVAAGVMSAQAMAVDFHGYARSGIGWTGSGGEQQCFQTGAQSKYRLGNECETYAELKL
+/
+N K88 fimbrial protein AB precursor
+T SIG
+C 21
+S MKKTLIALAIAASAASGMAHAWMTGDFNGSVDIGGSITADDYRQKWEWKVTGLNGFGNVLNDLTNGGTKL
+/
+N CFA/I fimbrial subunit B precursor
+T SIG
+C 23
+S MKFKKTIGAMALTTMFVAVSASAVEKNITVTASVDPVIDLLQADGNALPSVKLAYSPASKTFESYRVMTQ
+/
+N Pap fimbrial major pilin protein precursor
+T SIG
+C 22
+S MIKSVIAGAVAMAVVSFGVNNAAPTIPQGQGKVTFNGTVVDAPCSISQKSDQSIDFGQLSKSFLEAGGVS
+/
+N Lipoprotein 28 precursor
+T SIG
+C 23
+S MKLTTHHLRTGAALLLAGILLAGCDQSSSDAKHIKVGVINGAEQDVAEVAKVAKEKYGLDVELVGFSGSL
+/
+N Protease 3 precursor
+T SIG
+C 23
+S MPRSTWFKALLLLVALWAPLSQAETGWQPIQETIRKSDKDNRQYQAIRLDGMVVLLVSDPQAVKSLSALV
+/
+N M-agglutinin precursor
+T SIG
+C 24
+S MNLKKIAIASSVFAGITMALTCHAVTVTATHTVESDAEFTIDWVDAGPTTDAKDGEVWGHLDMTQTRGTP
+/
+N Ferrienterobactin receptor precursor
+T SIG
+C 22
+S MNKKIHSLALLVNLGIYGVAQAQEPTDTPVSHDDTIVVTAAEQNLQAPGVTITADEIRKNPVARDVSKII
+/
+N Penicillin G acylase precursor
+T SIG
+C 26
+S MKNRNRMIVNCVTASLMYYWSLPALAEQSSSEIKIVRDEYGMPHIYANDTHLFYGYGYVVAQDRLFQMEM
+/
+N Outer membrane usher protein faeD precursor
+T SIG
+C 35
+S MKKYVTTKSVQPVAFRLTTLSLVMSAVLGSASVIAGEKLDMSFIQGGGGVPEVWAALNGSYAPGRYLVDL
+/
+N Ferrichrome-iron receptor precursor
+T SIG
+C 33
+S MARSKTAQPKHSLRKIAVVVATAVSGMSVYAQAAVEPKEDTITVTAAPAPESAWGPAATIAARQSATGTK
+/
+N Outer membrane protein C precursor
+T SIG
+C 21
+S MKVKVLSLLVPALLVAGAANAAEVYNKDGNKLDLYGKVDGLHYFSDNKDVGDQTYMRLGFKGETQVTDQL
+/
+N Protein ushA precursor
+T SIG
+C 25
+S MKLLQRGVALALLTTFTLASETALAYEQDKTYKITVLHTNDHHGHFWRNEGEYGLAAQKTLVDGIRKEVA
+/
+N Outer membrane usher protein papC precursor
+T SIG
+C 24
+S MKDRIPFAVNNITCVILLSLFCNAASAVEFNTDVLDAADKKNIDFTRFSEGYVLPGQYLLDVIVNGQSIS
+/
+N PAP fimbrial minor pilin protein precursor
+T SIG
+C 22
+S MRLRFSVPLFFFGCVFVHGVFAGPFPPPGMSLPEYWGEEHVWWDGRAAFHEVVRPACTLAMEDAWQIIDM
+/
+N Ferrichrome-binding periplasmic protein precursor
+T SIG
+C 30
+S MSGLPLISRRRLLTAMALSPLLWQMNTAHAAAIDPNRIVALEWLPVELLLLGIVPYGVADTINYRLWVSE
+/
+N Heat-stable enterotoxin A3/A4 precursor
+T SIG
+C 19
+S MKKSILFIFLSVLSFSPFAQDAKPVESSKEKITLESKKCNIAKKSNKSGPSMNSSNYCCELCCNPACTGC
+/
+N Protease 7 precursor
+T SIG
+C 20
+S MRAKLLGIVLTTPIAISSFASTETLSFTPDNINADISLGTLSGKTKERVYAEEGGRKVSQLDWKFNNAAI
+/
+N Glycerophosphoryl diester phosphodiesterase precursor
+T SIG
+C 25
+S MKLTLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLPEHTLPAAMAYAQGADYLEQDLVMTKD
+/
+N Lysine-arginine-ornithine-binding periplasmic protein precursor
+T SIG
+C 22
+S MKKSILALSLLVGLSTAASSYAALPETVRIGTDTTYAPFSSKDAKGDFVGDIDLGNEMCKRMQVKCTWVA
+/
+N Protein ybiS precursor
+T SIG
+C 24
+S MNMKLKTLFAAAFAVVGFCSTASAVTYPLPTDGSRLVGQNQVITIPEGNTPLEYFAAEYQMGLSNMMEAN
+/
+N Rare lipoprotein A precursor
+T SIG
+C 17
+S MRKQWLGICIAAGMLAACTSDDGQQQTVSVPQPAVCNGPIVEISGADPRFPLNATANQDYQRDGKSYKIV
+/
+N Long-chain fatty acid transport protein precursor
+T SIG
+C 27
+S MVMSQKTLFTKSALAVAVALISTQAWSAGFQLNEFSSSGLGRAYSGEGAIDDAGNVSRNPALITMFDRPT
+/
+N F17 fimbrial protein precursor
+T SIG
+C 21
+S MQKIQFILGILAAASSSATLAYDGKITFNGKVVDQTCSVTTESKNLTVKLTVSANSLASSGKVVGLTPFT
+/
+N F41 fimbrial protein precursor
+T SIG
+C 22
+S MKKTLIALAVAASAAVSGSVMAADWTEGQPGDIIIGGEITSPSVKWLWKTEGLSSFSNTTNEIVKRKLNI
+/
+N S-fimbrial adhesin protein sfaS precursor
+T SIG
+C 22
+S MKLKAIILATGLINCIAFSAQAVDTTITVTGNVLQRTCNVPGNVDVSLGNYVSDFPNAGSGSPWVNFDLS
+/
+N Periplasmic trehalase precursor
+T SIG
+C 30
+S MKSPAPSRPQKMALIPACIFLCFAALSVQAEETPVTPQPPDILLGPLFNDQNAKLFPDQKTFADAVPNSD
+/
+N Fimbrial adhesin papG precursor
+T SIG
+C 21
+S MKKWFPAFLFLSLSGGNDALAGWHNVMFYAFNDYLTTNAGNVKVIDQPQLIPWNTGSATATYYSCSGPEF
+/
+N Heat-labile enterotoxin IIA, A chain precursor
+T SIG
+C 18
+S MIKHVLLFFVFISFSVSANDFFRADSRTPDEIRRAGGLLPRGQQEAYERGPININLYEHARGTVTGNTRY
+/
+N Heat-labile enterotoxin B chain precursor
+T SIG
+C 21
+S MNKVKFYVLFTALLSSLCAHGAPQSITELCSEYHNTQIYTINDKILSYTEMAGKREMVIITFKSGATFQV
+/
+N Heat-labile enterotoxin IIA, B chain precursor
+T SIG
+C 19
+S MSSKKIIGAFVLMTGILSGQVYAGVSEHFRNICNQTTADIVAGVQLKKYIDVNTNTRGIYVVSNTGGVWY
+/
+N K88 fimbrial protein AC precursor
+T SIG
+C 21
+S MKKTLIALAIAASAASGMAHAWMTGDFNGSVDIGGSITADDYRQKWEWKVTGLNGFGNVLNDLTNGGTKL
+/
+N K88 fimbrial protein AD precursor
+T SIG
+C 21
+S MKKTLIALAIAASAASGMAHAWMTGDFNGSVDIGGSITADDYRQKWEWKVTGLNGFGNVLNDLTNGGTKL
+/
+N Ferric aerobactin receptor precursor
+T SIG
+C 25
+S MMISKKYTLWALNPLLLTMMAPAVAQQTDDETFVVSANRSNRTVAEMAQTWVIENAELEQQIQGGKELKD
+/
+N TraT complement resistance protein precursor
+T SIG
+C 20
+S MKTKKLMMVALVSSTLALSGCGAMSTAIKKRNLEVKTQMSETIWLEPASETVFLQIKNTSDKDMSGLQGK
+/
+N CS3 fimbrial subunit A precursor
+T SIG
+C 22
+S MLKIKYLLIGLSLSAMSSYSLAAAGPTLTKELALNVLSPAALDATWAPQDLTLSNTGVSNTLVGVLTLSN
+/
+N Thiosulfate-binding protein precursor
+T SIG
+C 25
+S MAVNLLKKNSLALVASLLLAGHVQATELLNSSYDVSRELFAALNPPFEQQAKDNGGDKLTIKQSHAGSSK
+/
+N Colicin I receptor precursor
+T SIG
+C 25
+S MFRLNPFVRVGLCLSAISCAWPVLAVDDDGETMVVTASSVEQNLKDAPASSVITQEDLQRKPVQNLKDVL
+/
+N Protein papJ precursor
+T SIG
+C 27
+S MVVNKTTAVLYLIALSLSGFIHTFLRAEERGIYDDVFTADALRHYRINERGRTGSLTCSGALLSSPCTLV
+/
+N K99 fimbrial protein precursor
+T SIG
+C 22
+S MKKTLLAIILGGMAFATTNASANTGTINFNGKITSATCTIDPEVNGNRTSIDLGQAAISGHGTVVDFKLK
+/
+N Periplasmic protein trbC precursor
+T SIG
+C 21
+S MKLSMKSLAALLMMLNGAVMASENVNTPENRQFLKQQENLSRQLREKPDHLKAWAEKQVLENPLQRSDNH
+/
+N Glucose-1-phosphatase precursor
+T SIG
+C 22
+S MNKTLIAAAVAGIVLLASNAQAQTVPEGYQLQQVLMMSRHNLRAPLANNGVLEQSTPNKWPEWDVPGGQL
+/
+N Protein fanG precursor
+T SIG
+C 21
+S MKKLYKAITVICILMSNLQSAQGATKSVQVPIRTEVKIPTCQLEIDSSIDSFVKIEDIISSRATSKEANL
+/
+N Protein fanH precursor
+T SIG
+C 20
+S MIKKVPVLLFFMASISITHASQTATKSLGVSITLSKAQCKINNRAGISGSVLPMISTSGQIISSKKFTTV
+/
+N Fimbrial protein 987P precursor
+T SIG
+C 23
+S MRMKKSALTLAVLSSLFSGYSLAAPAENNTSQANLDFTGKVTASLCQVDTNLSQTIDLGELSTSALKATG
+/
+N Outer membrane porin protein nmpC precursor
+T SIG
+C 23
+S MKKLTVAISAVAASVLMAMSAQAAEIYNKDSNKLDLYGKVNAKHYFSSNDDDGDTTYARLGFKGETQIND
+/
+N Ecotin precursor
+T SIG
+C 20
+S MKTILPAVLFAAFATTSAWAAESVQPLEKIAPYPQAEKGMKRQVIQLTPQDESTLKVELLIGQTLEVDCN
+/
+N Periplasmic oligopeptide-binding protein precursor
+T SIG
+C 26
+S MTNITKRSLVAAGVLAALMAGNVALAADVPAGVTLAEKQTLVRNNGSEVQLDPHKIEGVPESNISRDLFE
+/
+N Periplasmic dipeptide transport protein precursor
+T SIG
+C 28
+S MRISLKKSGMLKLGLSLVAMTVAASVQAKTLVYCSEGSPEGFNPQLFTSGTYDASSVPLYNRLVEFKIGT
+/
+N Penicillin-binding protein 4 precursor
+T SIG
+C 20
+S MRFSRFIIGLTSCIAFSVQAANVDEYITQLPAGANLALMVQKVGASAPAIYHSQQMALPASTQKVITALA
+/
+N F107 fimbrial protein precursor
+T SIG
+C 21
+S MKRLVFISFVALSMTAGSAMAQQGDVKFFGNVSATTCNLTPQISGTVGDTQLGTVAPSGTGSEIPFALKA
+/
+N Alpha-amylase precursor
+T SIG
+C 17
+S MKLAACFLTLLPGFAVAASWTSPGFPAFSEQGTGTFVSHAQLPKGTRPLTNFDQQCWQPADAIKLNQMLS
+/
+N Arginine-binding periplasmic protein 2 precursor
+T SIG
+C 19
+S MKKLVLAALLASFTFGASAAEKINFGVSATYPPFESIGANNEIVGFDIDLKALCKQMQAECTFTNHAFDS
+/
+N Thiamine-binding periplasmic protein precursor
+T SIG
+C 18
+S MLKKCLPLLLLCTAPVFAKPVLTVYTYDSFAADWGPGPVVKKAFEADCNCLKLVALEDGVSLLNRLRMEG
+/
+N Organic solvent tolerance protein precursor
+T SIG
+C 24
+S MKKRIPTLLATMIATALYSQQGLAADLASQCMLGVPSYDRPLVQGDTNDLVTINADHAKGDYPDDAVFTG
+/
+N Outer membrane usher protein htrE precursor
+T SIG
+C 29
+S MTIEYTKNYHHLTRIATFCALLYCNTAFSAELVEYDHTFLMGQNASNIDLRYSEGNPAIPGVYDVSVYVN
+/
+N Glucans biosynthesis protein G precursor
+T SIG
+C 22
+S MMKMRWLSAAVMLTLYTSSSWAFSIDDVAKQAQSLAGKGYETPKSNLPSVRDMKYADYQQIQFNHDKAYW
+/
+N Protein yebF precursor
+T SIG
+C 21
+S MKKRGAFLGLLLVSACASVFAANNETSKSVTFPKCEDLDAAGIAASVKRDQQNRVARWADDQKIVGQADP
+/
+N Nickel-binding periplasmic protein precursor
+T SIG
+C 22
+S MLSTLRRTLFALLACASFIVHAAAPDEITTAWPVNVGPLNPHLYTPNQMFQSMVYEPLVKYQADGSVIPW
+/
+N Outer membrane protease ompP precursor
+T SIG
+C 23
+S MQTKLLAIMLAAPVVFSSQEASASDFFGPEKISTEINLGTLSGKTKERVYPEEGGRKVSQLDWKYSNAAI
+/
+N Thiol:disulfide interchange protein dsbD precursor
+T SIG
+C 19
+S MAQRIFTLILLLCSTSVFAGLFDAPGRSQFVPADQAFAFDFQQNQHDLNLWQIKDGYYLYRKQIRITPEH
+/
+N Outer membrane protein slp precursor
+T SIG
+C 18
+S MNMTKGALILSLSFLLAACSSIPQNIKGNNQPDIQKSFVAVHNQPGLYVGQARFGGKVINVINGKTDTLL
+/
+N Molybdate-binding periplasmic protein precursor
+T SIG
+C 24
+S MARKWLNLFAGAALSFAVAGNALADEGKITVFAAASLTNAMQDIATQFKKKGVDVVSSFASSSTLARQIE
+/
+N D-xylose-binding periplasmic protein precursor
+T SIG
+C 23
+S MKIKNILLTLCTSLLLTNVAAHAKEVKIGMAIDDLRLERWQKDRDIFVKKESLGAKVFVQSANGNEETQM
+/
+N Protein yhjJ precursor
+T SIG
+C 24
+S MQGTKIRLLAGGLLMMATAGYVQADALQPDPAWQQGTLSNGLQWQVLTTPRPSDRVEIRLLVNTGSLAES
+/
+N Glutamate/aspartate periplasmic-binding protein precursor
+T SIG
+C 22
+S MQLRKPATAILALALSAGLAQADDAAPAAGSTLDKIAKNGVIVVGHRESSPFSYYDNQQKVVGYSQDYSN
+/
+N Periplasmic protein torT precursor
+T SIG
+C 18
+S MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALPSLKDSYWLSLNYGMQEAAR
+/
+N Protease degQ precursor
+T SIG
+C 27
+S MKKQTQLLSALALSVGLTLSASFQAVASIPGQVADQAPLPSLAPMLEKVLAVVSVRVEGTASQGQKIPEE
+/
+N High-affinity zinc uptake system protein znuA precursor
+T SIG
+C 26
+S MLHKKTLLFAALSAALWGGATQAADAAVVASLKPVGFIASAIADGVTETELLPDGASEHDYSLRPSDVKR
+/
+N Protein erfK/srfK precursor
+T SIG
+C 21
+S MRRVNILCSFALLFASHTSLAVTYPLPPEGSRLVGQSFTVTVPDHNTQPLTFAAQYGQGLSNMLEANPGA
+/
+N D-allose-binding periplasmic protein precursor
+T SIG
+C 23
+S MNKYLKYFSGTLVGLMLSTSAFAAAEYAVVLKTLSNPFWVDMKKGIEDEATLGVSVDIFASPSEGDFQSQ
+/
+N ABC transporter periplasmic-binding protein ytfQ precursor
+T SIG
+C 21
+S MWKRLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAERGITLKIADGQQKQENQIKA
+/
+N Copper homeostasis protein cutF precursor
+T SIG
+C 20
+S MVKKAIVTAMAVISLFTLMGCNNRAEVDTLSPAQAAELKPMPQSWRGVLPADCEGIETSLFLEKDGTWVM
+/
+N Heat-labile enterotoxin IIB, A chain precursor
+T SIG
+C 20
+S MAKVISFFISLFLISFPLYANDYFRADSRTPDEVRRSGGLIPRGQDEAYEGTPININLYDHARGTATGNT
+/
+N Heat-labile enterotoxin IIB, B chain precursor
+T SIG
+C 23
+S MSFKKIIKAFVIMAALVSVQAHAGASQFFKDNCNRTTASLVEGVELTKYIDINNNTDGMYVVSSTGGVWR
+/
+N FKBP-type peptidyl-prolyl cis-trans isomerase fkpA precursor
+T SIG
+C 25
+S MKSLFKVTLLATTMAVALHAPITFAAEAAKPATAADSKAAFKNDDQKSAYLGASLGRYMENSLKEQEKLG
+/
+N Nonfimbrial adhesin 1 precursor
+T SIG
+C 28
+S MKAKKYENQIYNENGRRCQRHGRRLAIADANGLNTVNAGDGKNLGTATATTTLQSCSVDLNLVTPNATVN
+/
+N Copper amine oxidase precursor
+T SIG
+C 30
+S MGSPSLYSARKTTLALAVALSFAWQAPVFAHGGEAHMVPMDKTLKEFGADQWDDYAQLFTLIKDGAYVKV
+/
+N Outer membrane protein G precursor
+T SIG
+C 21
+S MKKLLPCTALVMCAGMACAQAEERNDWHFNIGAMYEIENVEGYGEDMDGLEPSVYFNAANGPWRIALAYY
+/
+N Transthyretin-like protein precursor
+T SIG
+C 23
+S MLKRYLVLSVATAAFSLPSLVNAAQQNILSVHILNQQTGKPAADVTVTLEKADNGWLQLNTAKTDKDGRI
+/
+N Metal-binding protein yodA precursor
+T SIG
+C 23
+S MAIRLYKLAVALGVFIVSAPAFSHGHHSHGKPLTEVEQKAANGVFDDANVNRTLSDWDGVWQSVYPLLQS
+/
+N Protein yfdX precursor
+T SIG
+C 21
+S MKRLIMATMVTAILASSTVWAADNAPVAAQQQTQQVQQTQKTAAAAERISQGLYAMRDVQVARLALFHGD
+/
+N Thiol:disulfide interchange protein dsbG precursor
+T SIG
+C 17
+S MLKKILLLALLPAIAFAEELPAPVKAIEKQGITIIKTFDAPGGMKGYLGKQDMGVTIYLTPDGKHAISGY
+/
+N Periplasmic murein peptide-binding protein precursor
+T SIG
+C 22
+S MKHSVSVTCCALLVSSISLSYAAEVPSGTVLAEKQELVRHIKDEPASLDPKAVGLPEIQVIRDLFEGLVN
+/
+N UPF0098 protein ybcL precursor
+T SIG
+C 21
+S MKTLIVSTVLAFITFSAQAAAFQVTSNEIKTGEQLTTSHVFSGFGCEGGNSPSLTWSGVPEGTKSFAVTV
+/
+N Outer membrane protein N precursor
+T SIG
+C 21
+S MKSKVLALLIPALLAAGAAHAAEVYNKDGNKLDLYGKVDGLHYFSDNSAKGDQSYARLGFKGETQINDQL
+/
+N Adhesin AIDA-I precursor
+T SIG
+C 49
+S MNKAYSIIWSHSRQAWIVASELARGHGFVLAKNTLLVLAVVSTIGNAFAVISGTVSSGGTVSSGETQIVY
+/
+N Probable copper-binding protein pcoE precursor
+T SIG
+C 20
+S MKKILVSFVAIMAVASSAMAAETMNMHDQVNNAQAPAHQMQSSAEKSAVQDSMTMMDMSSHDQAAMSHDM
+/
+N Taurine-binding periplasmic protein precursor
+T SIG
+C 22
+S MAISSRNTLLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQADNTFAKESGTVDWRKFDSGASIVRALASG
+/
+N Temperature-sensitive hemagglutinin tsh precursor
+T SIG
+C 52
+S MNRIYSLRYSAVARGFIAVSEFARKCVHKSVRRLCFPVLLLIPVLFSAGSAGTVNNELGYQLFRDFAENK
+/
+N Serine protease pic precursor
+T SIG
+C 55
+S MNKVYSLKYCPVTGGLIAVSELARRVIKKTCRRLTHILLAGIPAICLCYSISQAGIVRSDIAYQIYRDFA
+/
+N Serine protease espP precursor
+T SIG
+C 55
+S MNKIYSLKYSHITGGLIAVSELSGRVSSRATGKKKHKRILALCFLGLLQSYSFASQMDISNFYIRDYMDF
+/
+N Serine protease pic precursor
+T SIG
+C 55
+S MNKVYSLKYCPVTGGLIVVSELASRVIKKTCRRLTHILLAGIPAVYLYYPISQAGIVRSDIAYQIYRDFA
+/
+N Serine protease sat precursor
+T SIG
+C 49
+S MNKIYSLKYSAATGGLIAVSELAKRVSGKTNRKLVATMLSLAVAGTVNAAIDISNVWARDYLDLAQNKGI
+/
+N Serine protease espC precursor
+T SIG
+C 53
+S MNKIYALKYCHATGGLIAVSELASRVMKKAARGSLLALFNLSLYGAFLSAQAAQLNIDNVWARDYLDLAQ
+/