swissmedic-diff 0.1.4

data/swissmedic-diff.gemspec

@@ -0,0 +1,22 @@
+spec = Gem::Specification.new do |s|
+   s.name        = "swissmedic-diff"
+   s.version     = "0.1.4"
+   s.summary     = "Find out what Products have changed on the swiss healthcare market"
+   s.description = "Compares two Excel Documents provided by Swissmedic and displays the salient differences"
+   s.author      = "Hannes Wyss, Masaomi Hatakeyama"
+   s.email       = "hwyss@ywesee.com, mhatakeyama@ywesee.com"
+   s.platform    = Gem::Platform::RUBY
+   s.files       = Dir.glob('lib/*.rb') +
+                   Dir.glob('bin/*') +
+                   Dir.glob('[A-Z]*') +
+                   Dir.glob('test/*') +
+                   Dir.glob('test/data/*.xls')
+   s.test_file   = "test/test_swissmedic-diff.rb"
+   s.executables << 'swissmedic-diff'
+   s.add_dependency('spreadsheet')
+   s.add_development_dependency "hoe"
+   s.add_development_dependency "minitest"
+   s.add_development_dependency "minitest-reporters"
+
+   s.homepage	 = "https://github.com/zdavatz/swissmedic-diff"
+end

data/test/test_swissmedic-diff.rb

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+#!/usr/bin/env ruby
+# -*- encoding: utf-8 -*-
+# SwissmedicPluginTest -- oddb.org -- 18.03.2008 -- hwyss@ywesee.com
+
+$: << File.expand_path("../lib", File.dirname(__FILE__))
+
+require 'test/unit'
+require 'swissmedic-diff'
+
+module ODDB
+  class SwissmedicPluginTest < Test::Unit::TestCase
+    def setup
+      @diff = SwissmedicDiff.new
+      @data = File.expand_path 'data/Packungen.xls',
+                                File.dirname(__FILE__)
+      @older = File.expand_path 'data/Packungen.older.xls',
+                                File.dirname(__FILE__)
+      @data_error_column = File.expand_path 'data/Packungen_error_column.xls',
+                                File.dirname(__FILE__)
+      @data_error_missing_case1 = File.expand_path 'data/Packungen_error_missing1.xls',
+                                File.dirname(__FILE__)
+      @data_error_missing_case2 = File.expand_path 'data/Packungen_error_missing2.xls',
+                                File.dirname(__FILE__)
+      @data_2013 = File.expand_path 'data/Packungen-2013.10.14.xls',
+                                File.dirname(__FILE__)
+      @workbook = Spreadsheet.open(@data)
+    end
+
+    def test_iterate
+      diff = SwissmedicDiff.new
+      strings = []
+      diff.each_valid_row(Spreadsheet.open(@data_2013)) { |x| strings << "iksnr #{x[0]} packungs id #{x[diff.column(:ikscd)]}" }
+      expected = [
+        "iksnr 00277 packungs id 001",
+        "iksnr 00277 packungs id 002",
+        "iksnr 61338 packungs id 001",
+        "iksnr 61338 packungs id 002",
+        "iksnr 61367 packungs id 001",
+        "iksnr 61367 packungs id 002",
+        "iksnr 61367 packungs id 003",
+        "iksnr 61367 packungs id 004",
+        "iksnr 61367 packungs id 005",
+        "iksnr 61416 packungs id 001",
+        "iksnr 63164 packungs id 001",
+        "iksnr 63164 packungs id 002",
+        "iksnr 63164 packungs id 003",
+        "iksnr 65040 packungs id 001"
+      ]
+      assert_equal(expected, strings)
+    end
+
+    def test_diff_pre_2013_to_2013
+      result = @diff.diff(@data_2013, @data)
+      assert(result.changes.flatten.index('Zulassungs-Nummer') == nil, "Should not find Zulassungs-Nummer in difference")
+      assert_equal 6, result.news.size
+      expected = {
+"00277"=>[:company, :sequence_date, :substances, :composition, :name_base],
+ "61338"=>[:sequence_date, :company, :atc_class],
+ "61367"=>
+  [:sequence_date,
+   :ikscat,
+   :substances,
+   :composition,
+   :sequence,
+   :replaced_package],
+ "61416"=>[:sequence_date],
+ "63164"=>[:new],
+ "65040"=>[:new],
+ "00275"=>[:delete],
+ "61345"=>[:delete]
+      }
+      assert_equal(expected, result.changes)
+      diff_string =%(+ 63164: Rivastigmin Patch Sandoz 5, Transdermales Pflaster
++ 65040: Panthoben, Salbe
+- 00275: Cardio-Pulmo-Rénal Sérocytol, suppositoire
+- 61345: Terbinafin-Teva 125 mg, Tabletten
+> 00277: Coeur-Vaisseaux Sérocytol, suppositoire; Zulassungsinhaber (Sérolab, société anonyme), Zulassungsdatum Sequenz (2010-04-26), Wirkstoffe (globulina equina (immunisé avec coeur, endothélium vasculaire porcins)), Zusammensetzung (globulina equina (immunisé avec coeur, endothélium vasculaire porcins) 8 mg, propylenglycolum, conserv.: E 216, E 218, excipiens pro suppositorio.), Namensänderung (Coeur-Vaisseaux Sérocytol, suppositoire)
+> 61338: Cefuroxim Fresenius i.v. 750 mg, Pulver zur Herstellung einer i.v. Lösung; Zulassungsdatum Sequenz (2010-03-16), Zulassungsinhaber (Fresenius Kabi (Schweiz) AG), ATC-Code (J01DC02)
+> 61367: Hypericum-Mepha 250, Lactab; Zulassungsdatum Sequenz (2010-04-23), Abgabekategorie (D), Wirkstoffe (hyperici herbae extractum ethanolicum siccum quantificatum), Zusammensetzung (hyperici herbae extractum ethanolicum siccum quantificatum 250 mg corresp. hypericinum 0.25-0.75 mg, DER: 4-7:1, excipiens pro compresso obducto.), Packungs-Nummer (006 -> 005)
+> 61416: Otriduo Schnupfen, Nasentropfen; Zulassungsdatum Sequenz (2010-05-12))
+      assert_equal(diff_string, @diff.to_s)      
+    end
+    def test_diff
+      result = @diff.diff(@data, @older)
+      assert_equal 3, result.news.size
+      assert_equal 'Cardio-Pulmo-Rénal Sérocytol, suppositoire',
+                   result.news.first.at(2)
+      assert_equal 2, result.updates.size
+      assert_equal 'Coeur-Vaisseaux Sérocytol, suppositoire(update)',
+                   result.updates.first.at(2)
+      assert_equal 6, result.changes.size
+      expected = {
+        "00275"=>[:new],
+        "00277"=>[:name_base],
+        "61338"=>[:company, :atc_class],
+        "61367"=>[:sequence, :replaced_package],
+        "61416"=>[:new],
+        "00274"=>[:delete]
+      }
+      assert_equal(expected, result.changes)
+      assert_equal 3, result.package_deletions.size
+      assert_equal 4, result.package_deletions.first.size
+      iksnrs = result.package_deletions.collect { |row| row.at(0) }.sort
+      ikscds = result.package_deletions.collect { |row| row.at(2) }.sort
+      assert_equal ["00274", "61367", "61367"], iksnrs
+      assert_equal ["001", "002", "005"], ikscds
+      assert_equal 1, result.sequence_deletions.size
+      assert_equal ["00274", "01"], result.sequence_deletions.at(0)
+      assert_equal 1, result.registration_deletions.size
+      assert_equal ["00274"], result.registration_deletions.at(0)
+      assert_equal 1, result.replacements.size
+      assert_equal '005', result.replacements.values.first
+    end
+    def test_diff_error_column
+      assert_raise(RuntimeError) { 
+        @diff.diff(@data_error_column, @older)
+      }
+    end
+
+    # if row.size < COLUMNS.size/2
+    def test_diff_error_missing_case1
+      assert_raise(RuntimeError) {
+        @diff.diff(@data_error_missing_case1, @older)
+      }
+    end
+
+    # if row.select{|val| val==nil}.size > COLUMNS.size/2
+    def test_diff_error_missing_case2
+      assert_raise(RuntimeError) {
+        @diff.diff(@data_error_missing_case2, @older)
+      }
+    end
+    def test_diff__ignore
+      ignore = [:company, :atc_class]
+      result = @diff.diff(@data, @older, ignore)
+      assert_equal 3, result.news.size
+      assert_equal 'Cardio-Pulmo-Rénal Sérocytol, suppositoire',
+                   result.news.first.at(2)
+      assert_equal 1, result.updates.size
+      assert_equal 'Coeur-Vaisseaux Sérocytol, suppositoire(update)',
+                   result.updates.first.at(2)
+      assert_equal 5, result.changes.size
+      expected = {
+        "00275"=>[:new],
+        "00277"=>[:name_base],
+        "61367"=>[:sequence, :replaced_package],
+        "61416"=>[:new],
+        "00274"=>[:delete]
+      }
+      assert_equal(expected, result.changes)
+      assert_equal 3, result.package_deletions.size
+      assert_equal 4, result.package_deletions.first.size
+      iksnrs = result.package_deletions.collect { |row| row.at(0) }.sort
+      ikscds = result.package_deletions.collect { |row| row.at(2) }.sort
+      assert_equal ["00274", "61367", "61367"], iksnrs
+      assert_equal ["001", "002", "005"], ikscds
+      assert_equal 1, result.sequence_deletions.size
+      assert_equal ["00274", "01"], result.sequence_deletions.at(0)
+      assert_equal 1, result.registration_deletions.size
+      assert_equal ["00274"], result.registration_deletions.at(0)
+      assert_equal 1, result.replacements.size
+      assert_equal '005', result.replacements.values.first
+    end
+    def test_to_s
+      assert_nothing_raised {
+        @diff.to_s
+      }
+      @diff.diff(@data, @older)
+      assert_equal <<-EOS.strip, @diff.to_s
++ 00275: Cardio-Pulmo-Rénal Sérocytol, suppositoire
++ 61416: Otriduo Schnupfen, Nasentropfen
+- 00274: Cardio-Pulmo-Rénal Sérocytol, suppositoire
+> 00277: Coeur-Vaisseaux Sérocytol, suppositoire; Namensänderung (Coeur-Vaisseaux Sérocytol, suppositoire)
+> 61338: Cefuroxim Fresenius i.v. 750 mg, Pulver zur Herstellung einer i.v. Lösung; Zulassungsinhaber (Fresenius Kabi (Schweiz) AG), ATC-Code (J01DC02)
+> 61367: Hypericum-Mepha 250, Lactab; Packungs-Nummer (005 -> 006)
+      EOS
+      assert_equal <<-EOS.strip, @diff.to_s(:name)
+- 00274: Cardio-Pulmo-Rénal Sérocytol, suppositoire
++ 00275: Cardio-Pulmo-Rénal Sérocytol, suppositoire
+> 61338: Cefuroxim Fresenius i.v. 750 mg, Pulver zur Herstellung einer i.v. Lösung; Zulassungsinhaber (Fresenius Kabi (Schweiz) AG), ATC-Code (J01DC02)
+> 00277: Coeur-Vaisseaux Sérocytol, suppositoire; Namensänderung (Coeur-Vaisseaux Sérocytol, suppositoire)
+> 61367: Hypericum-Mepha 250, Lactab; Packungs-Nummer (005 -> 006)
++ 61416: Otriduo Schnupfen, Nasentropfen
+      EOS
+      assert_equal <<-EOS.strip, @diff.to_s(:registration)
+- 00274: Cardio-Pulmo-Rénal Sérocytol, suppositoire
++ 00275: Cardio-Pulmo-Rénal Sérocytol, suppositoire
+> 00277: Coeur-Vaisseaux Sérocytol, suppositoire; Namensänderung (Coeur-Vaisseaux Sérocytol, suppositoire)
+> 61338: Cefuroxim Fresenius i.v. 750 mg, Pulver zur Herstellung einer i.v. Lösung; Zulassungsinhaber (Fresenius Kabi (Schweiz) AG), ATC-Code (J01DC02)
+> 61367: Hypericum-Mepha 250, Lactab; Packungs-Nummer (005 -> 006)
++ 61416: Otriduo Schnupfen, Nasentropfen
+      EOS
+    end
+  end
+end

metadata

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+--- !ruby/object:Gem::Specification
+name: swissmedic-diff
+version: !ruby/object:Gem::Version
+  version: 0.1.4
+  prerelease: 
+platform: ruby
+authors:
+- Masaomi Hatakeyama, Zeno R.R. Davatz
+autorequire: 
+bindir: bin
+cert_chain: []
+date: 2013-10-22 00:00:00.000000000 Z
+dependencies:
+- !ruby/object:Gem::Dependency
+  name: rdoc
+  requirement: !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ~>
+      - !ruby/object:Gem::Version
+        version: '3.10'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ~>
+      - !ruby/object:Gem::Version
+        version: '3.10'
+- !ruby/object:Gem::Dependency
+  name: hoe
+  requirement: !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ~>
+      - !ruby/object:Gem::Version
+        version: '2.13'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ~>
+      - !ruby/object:Gem::Version
+        version: '2.13'
+description: ! '* Compares two Excel Documents provided by Swissmedic and displays
+  the
+
+  salient differences. Also: Find out what Products have changed on the
+
+  swiss healthcare market.
+
+
+  Up-To-Date file:
+
+
+  * http://www.swissmedic.ch//daten/00080/00251/index.html'
+email:
+- mhatakeyama@ywesee.com, zdavatz@ywesee.com
+executables:
+- swissmedic-diff
+extensions: []
+extra_rdoc_files:
+- History.txt
+- Manifest.txt
+- README.txt
+files:
+- .gitignore
+- .travis.yml
+- Gemfile
+- Gemfile.lock
+- History.txt
+- LICENSE
+- Manifest.txt
+- README.txt
+- Rakefile
+- bin/swissmedic-diff
+- lib/swissmedic-diff.rb
+- setup.rb
+- swissmedic-diff.gemspec
+- test/data/Packungen-2013.10.14.xls
+- test/data/Packungen.older.xls
+- test/data/Packungen.xls
+- test/data/Packungen_error_column.xls
+- test/data/Packungen_error_missing1.xls
+- test/data/Packungen_error_missing2.xls
+- test/test_swissmedic-diff.rb
+- .gemtest
+homepage: https://github.com/zdavatz/swissmedic-diff
+licenses: []
+post_install_message: 
+rdoc_options:
+- --main
+- README.txt
+require_paths:
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement
+  none: false
+  requirements:
+  - - ! '>='
+    - !ruby/object:Gem::Version
+      version: '0'
+required_rubygems_version: !ruby/object:Gem::Requirement
+  none: false
+  requirements:
+  - - ! '>='
+    - !ruby/object:Gem::Version
+      version: '0'
+requirements: []
+rubyforge_project: swissmedic-diff
+rubygems_version: 1.8.25
+signing_key: 
+specification_version: 3
+summary: ! '* Compares two Excel Documents provided by Swissmedic and displays the
+  salient differences'
+test_files:
+- test/test_swissmedic-diff.rb