svm_toolkit 1.1.7-java → 1.1.8-java

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data/LICENSE.rdoc

@@ -1,59 +1,59 @@
-= MIT License
-
-Copyright (c) 2011-20, Peter Lane
-
-Permission is hereby granted, free of charge, to any person obtaining a copy
-of this software and associated documentation files (the "Software"), to deal
-in the Software without restriction, including without limitation the rights
-to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-copies of the Software, and to permit persons to whom the Software is
-furnished to do so, subject to the following conditions:
-
-The above copyright notice and this permission notice shall be included in all
-copies or substantial portions of the Software.
-
-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
-SOFTWARE.
-
-
-= For libsvm:
-
-Copyright (c) 2000-2012 Chih-Chung Chang and Chih-Jen Lin
-All rights reserved.
-
-Redistribution and use in source and binary forms, with or without
-modification, are permitted provided that the following conditions
-are met:
-
-1. Redistributions of source code must retain the above copyright
-notice, this list of conditions and the following disclaimer.
-
-2. Redistributions in binary form must reproduce the above copyright
-notice, this list of conditions and the following disclaimer in the
-documentation and/or other materials provided with the distribution.
-
-3. Neither name of copyright holders nor the names of its contributors
-may be used to endorse or promote products derived from this software
-without specific prior written permission.
-
-
-THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
-``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
-LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
-A PARTICULAR PURPOSE ARE DISCLAIMED.  IN NO EVENT SHALL THE REGENTS OR
-CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
-EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
-PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
-PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
-LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
-NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
-SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
-= For PlotPackage:
-
-Library General Public License (http://www.gnu.org/copyleft/lgpl.html)
+= MIT License
+
+Copyright (c) 2011-20, Peter Lane
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.
+
+
+= For libsvm:
+
+Copyright (c) 2000-2012 Chih-Chung Chang and Chih-Jen Lin
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions
+are met:
+
+1. Redistributions of source code must retain the above copyright
+notice, this list of conditions and the following disclaimer.
+
+2. Redistributions in binary form must reproduce the above copyright
+notice, this list of conditions and the following disclaimer in the
+documentation and/or other materials provided with the distribution.
+
+3. Neither name of copyright holders nor the names of its contributors
+may be used to endorse or promote products derived from this software
+without specific prior written permission.
+
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
+``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
+LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
+A PARTICULAR PURPOSE ARE DISCLAIMED.  IN NO EVENT SHALL THE REGENTS OR
+CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
+EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
+PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
+PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
+LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
+NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
+SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+= For PlotPackage:
+
+Library General Public License (http://www.gnu.org/copyleft/lgpl.html)

data/README.rdoc

@@ -1,103 +1,99 @@
-= SVM Toolkit 
-
-source:: https://notabug.org/peterlane/svm_toolkit/
-
-== Description
-
-Support-vector machines are a popular tool in data mining.  This package
-includes an amended version of the Java implementation of the libsvm library
-(version 3.11).  Additional methods and examples are provided to support
-standard training techniques, such as cross-validation, and simple
-visualisations.  Training/testing of models can use a variety of built-in or
-user-defined evaluation methods, including overall accuracy, geometric mean,
-precision and recall.
-
-== Features 
-
-- All features of LibSVM 3.11 are supported, and many are augmented with Ruby wrappers.
-- Loading Problem definitions from file in Svmlight, Csv or Arff (simple subset) format.
-- Creating Problem definitions from values supplied programmatically in arrays.
-- Rescaling of feature values.
-- Integrated cost/gamma search for model with RBF kernel, taking advantage of multiple cores.
-- Contour plot visualisation of cost/gamma search results.
-- Model provides value of w-squared for hyperplane.
-- svm-demo application, a version of the svm_toy applet which comes with libsvm.
-- Model stores indices of training instances used as support vectors.
-- User-selected evaluation techniques supported in Model#evaluate_dataset and
-  Svm.cross_validation_search.
-- Library provides evaluation classes for Cohen's Kappa statistics, F-measure,
-  geometric-mean, Matthews Correlation Coefficient, overall-accuracy,
-  precision, and recall.
-
-== Example
-
-The following example illustrates how a dataset can be constructed in code, and 
-an SVM model created and tested against the different kernels. 
-
-   require "svm_toolkit"
-   include SvmToolkit
-   
-   puts "Classification with LIBSVM"
-   puts "--------------------------"
-    
-   # Sample dataset: the 'Play Tennis' dataset 
-   # from T. Mitchell, Machine Learning (1997)
-   # --------------------------------------------
-   # Labels for each instance in the training set
-   #    1 = Play, 0 = Not
-   Labels = [0, 0, 1, 1, 1, 0, 1, 0, 1, 1, 1, 1, 1, 0]
-   
-   # Recoding the attribute values into range [0, 1]
-   Instances = [
-     [0.0,1.0,1.0,0.0],
-     [0.0,1.0,1.0,1.0],
-     [0.5,1.0,1.0,0.0],
-     [1.0,0.5,1.0,0.0],
-     [1.0,0.0,0.0,0.0],
-     [1.0,0.0,0.0,1.0],
-     [0.5,0.0,0.0,1.0],
-     [0.0,0.5,1.0,0.0],
-     [0.0,0.0,0.0,0.0],
-     [1.0,0.5,0.0,0.0],
-     [0.0,0.5,0.0,1.0],
-     [0.5,0.5,1.0,1.0],
-     [0.5,1.0,0.0,0.0],
-     [1.0,0.5,1.0,1.0]
-   ]
-   
-   # create some arbitrary train/test split
-   TrainingSet = Problem.from_array(Instances.slice(0, 10), Labels.slice(0, 10))
-   TestSet     = Problem.from_array(Instances.slice(10, 4), Labels.slice(10, 4))
-   
-   # Iterate over each kernel type
-   Parameter.kernels.each do |kernel|
-    
-     # -- train model for this kernel type
-     params = Parameter.new(
-       :svm_type => Parameter::C_SVC, 
-       :kernel_type => kernel,
-       :cost => 10, 
-       :degree => 1,
-       :gamma => 100
-     )
-     model = Svm.svm_train(TrainingSet, params)
-   
-     # -- test kernel performance on the training set
-     errors = model.evaluate_dataset(TrainingSet, :print_results => true)
-     puts "Kernel #{Parameter.kernel_name(kernel)} has #{errors} on the training set"
-   
-     # -- test kernel performance on the test set
-     errors = model.evaluate_dataset(TestSet, :print_results => true)
-     puts "Kernel #{Parameter.kernel_name(kernel)} has #{errors} on the test set"
-   end
-
-More examples can be found in the source code, linked above.
-
-== Acknowledgements
-
-The svm_toolkit is based on LibSVM, which is available from: 
-http://www.csie.ntu.edu.tw/~cjlin/libsvm/
-
-The contour plot uses the PlotPackage library, available from:
-http://thehuwaldtfamily.org/java/Packages/Plot/PlotPackage.html
-
+= SVM Toolkit 
+
+Support-vector machines are a popular tool in data mining.  This package
+includes an amended version of the Java implementation of the libsvm library
+(version 3.11).  Additional methods and examples are provided to support
+standard training techniques, such as cross-validation, and simple
+visualisations.  Training/testing of models can use a variety of built-in or
+user-defined evaluation methods, including overall accuracy, geometric mean,
+precision and recall.
+
+== Features 
+
+- All features of LibSVM 3.11 are supported, and many are augmented with Ruby wrappers.
+- Loading Problem definitions from file in Svmlight, Csv or Arff (simple subset) format.
+- Creating Problem definitions from values supplied programmatically in arrays.
+- Rescaling of feature values.
+- Integrated cost/gamma search for model with RBF kernel, taking advantage of multiple cores.
+- Contour plot visualisation of cost/gamma search results.
+- Model provides value of w-squared for hyperplane.
+- svm-demo application, a version of the svm_toy applet which comes with libsvm.
+- Model stores indices of training instances used as support vectors.
+- User-selected evaluation techniques supported in Model#evaluate_dataset and
+  Svm.cross_validation_search.
+- Library provides evaluation classes for Cohen's Kappa statistics, F-measure,
+  geometric-mean, Matthews Correlation Coefficient, overall-accuracy,
+  precision, and recall.
+
+== Example
+
+The following example illustrates how a dataset can be constructed in code, and 
+an SVM model created and tested against the different kernels. 
+
+   require "svm_toolkit"
+   include SvmToolkit
+   
+   puts "Classification with LIBSVM"
+   puts "--------------------------"
+    
+   # Sample dataset: the 'Play Tennis' dataset 
+   # from T. Mitchell, Machine Learning (1997)
+   # --------------------------------------------
+   # Labels for each instance in the training set
+   #    1 = Play, 0 = Not
+   Labels = [0, 0, 1, 1, 1, 0, 1, 0, 1, 1, 1, 1, 1, 0]
+   
+   # Recoding the attribute values into range [0, 1]
+   Instances = [
+     [0.0,1.0,1.0,0.0],
+     [0.0,1.0,1.0,1.0],
+     [0.5,1.0,1.0,0.0],
+     [1.0,0.5,1.0,0.0],
+     [1.0,0.0,0.0,0.0],
+     [1.0,0.0,0.0,1.0],
+     [0.5,0.0,0.0,1.0],
+     [0.0,0.5,1.0,0.0],
+     [0.0,0.0,0.0,0.0],
+     [1.0,0.5,0.0,0.0],
+     [0.0,0.5,0.0,1.0],
+     [0.5,0.5,1.0,1.0],
+     [0.5,1.0,0.0,0.0],
+     [1.0,0.5,1.0,1.0]
+   ]
+   
+   # create some arbitrary train/test split
+   TrainingSet = Problem.from_array(Instances.slice(0, 10), Labels.slice(0, 10))
+   TestSet     = Problem.from_array(Instances.slice(10, 4), Labels.slice(10, 4))
+   
+   # Iterate over each kernel type
+   Parameter.kernels.each do |kernel|
+    
+     # -- train model for this kernel type
+     params = Parameter.new(
+       :svm_type => Parameter::C_SVC, 
+       :kernel_type => kernel,
+       :cost => 10, 
+       :degree => 1,
+       :gamma => 100
+     )
+     model = Svm.svm_train(TrainingSet, params)
+   
+     # -- test kernel performance on the training set
+     errors = model.evaluate_dataset(TrainingSet, :print_results => true)
+     puts "Kernel #{Parameter.kernel_name(kernel)} has #{errors} on the training set"
+   
+     # -- test kernel performance on the test set
+     errors = model.evaluate_dataset(TestSet, :print_results => true)
+     puts "Kernel #{Parameter.kernel_name(kernel)} has #{errors} on the test set"
+   end
+
+More examples can be found in the source: https://codeberg.org/peterlane/svm_toolkit
+
+== Acknowledgements
+
+The svm_toolkit is based on LibSVM, which is available from: 
+http://www.csie.ntu.edu.tw/~cjlin/libsvm/
+
+The contour plot uses the PlotPackage library, available from:
+http://thehuwaldtfamily.org/java/Packages/Plot/PlotPackage.html
+