sushi_fabric 1.1.5 → 1.1.6

checksums.yaml

@@ -1,7 +1,7 @@
 ---
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+  data.tar.gz: 935cee957707889446cbd842e506551cb6269a38f71ad300e3c828bdac6790a0
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data/lib/sushi_fabric/sushiApp.rb

@@ -1,6 +1,6 @@
 #!/usr/bin/env ruby
 # encoding: utf-8
-# Version = '20211209-162918'
+# Version = '20220127-101054'
 
 require 'csv'
 require 'fileutils'
@@ -590,6 +590,7 @@ rm -rf #{@scratch_dir} || exit 1
           uploaded_file_path = File.join(@result_dir, "uploaded", File.basename(value))
           out << [key, uploaded_file_path]
           @params[key] = uploaded_file_path
+          @output_params[key] = uploaded_file_path
         else
           out << [key, value]
         end
@@ -806,6 +807,12 @@ rm -rf #{@scratch_dir} || exit 1
       data_set.id
     end
   end
+  def save_parameters_in_sushi_db
+    if @next_dataset_id and next_dataset = DataSet.find_by_id(@next_dataset_id)
+      next_dataset.job_parameters = @output_params
+      next_dataset.save
+    end
+  end
   def main(mock=false)
     ## sushi writes creates the job scripts and builds the result data set that is to be generated
     @result_dataset = []
@@ -852,6 +859,7 @@ rm -rf #{@scratch_dir} || exit 1
       unless NO_ROR
         @current_user ||= nil
         @next_dataset_id = save_data_set(data_set_arr.to_a.flatten, headers, rows, @current_user, @child)
+        save_parameters_in_sushi_db
 
         unless @off_bfabric_registration
           if next_dataset = DataSet.find_by_id(@next_dataset_id)

data/lib/sushi_fabric/version.rb

@@ -1,3 +1,3 @@
 module SushiFabric
-  VERSION = "1.1.5"
+  VERSION = "1.1.6"
 end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: sushi_fabric
 version: !ruby/object:Gem::Version
-  version: 1.1.5
+  version: 1.1.6
 platform: ruby
 authors:
 - Functional Genomics Center Zurich
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2021-12-09 00:00:00.000000000 Z
+date: 2022-01-27 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: bundler