sushi_fabric 0.9.1 → 0.9.2

checksums.yaml

@@ -1,7 +1,7 @@
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data/lib/sushi_fabric/sushiApp.rb

@@ -1,6 +1,6 @@
 #!/usr/bin/env ruby
 # encoding: utf-8
-# Version = '20190425-142129'
+# Version = '20190731-142332'
 
 require 'csv'
 require 'fileutils'
@@ -649,7 +649,14 @@ rm -rf #{@scratch_dir} || exit 1
     end
   end
   def dataset_mode
-    @dataset = @dataset_hash # for a case of @dataset is used in def next_datast in SUSHIApp
+    selected_samples = Hash[*@params['samples'].split(',').map{|sample_name| [sample_name, true]}.flatten]
+    # for a case of @dataset is used in def next_datast in SUSHIApp
+    @dataset = []
+    @dataset_hash.each do |row|
+      if selected_samples[row['Name']]
+        @dataset << row
+      end
+    end
     @job_script = if @dataset_sushi_id and dataset = DataSet.find_by_id(@dataset_sushi_id.to_i)
                     File.join(@job_script_dir, @analysis_category + '_' + dataset.name.gsub(/[\s+,\/]/,'_') + '.sh')
                   else 

data/lib/sushi_fabric/version.rb

@@ -1,3 +1,3 @@
 module SushiFabric
-  VERSION = "0.9.1"
+  VERSION = "0.9.2"
 end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: sushi_fabric
 version: !ruby/object:Gem::Version
-  version: 0.9.1
+  version: 0.9.2
 platform: ruby
 authors:
 - Functional Genomics Center Zurich
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2019-04-25 00:00:00.000000000 Z
+date: 2019-07-31 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: bundler