sushi_fabric 0.6.0 → 0.6.1

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA1:
-  metadata.gz: 06c6576ae298fa353b6a918ff6eebee9219f1504
-  data.tar.gz: 17f3cd19091ea588353bb169da52b03ed6c2268a
+  metadata.gz: ed87d2fccd596f1751bfd355ee0b98b71dc2c64b
+  data.tar.gz: abca70f978344f35a75cdd906c50fe0b9e7f989a
 SHA512:
-  metadata.gz: bdae024ed9454f93b5b5a600d81c435bddf2acabe8eaf704a55b62ecee0228a31b9d70d7181e02c3c3e50d1e794b871c3686eb9f4ee151271c62d5f096274879
-  data.tar.gz: 14f415001c6aaa4ad16b82ebf116b5a3c62b92c238f7d03a7f6ba6427b81838d88d0c64c11d430905da4ecc148ae2a17beb17553c823e6d59094c14f14afd00f
+  metadata.gz: 3d5f29f9110262aece8b223b1d3570b7f5d88cc5fc5a6ec039a6ebcfcec030be49a8612ee576ffb0c013a7e6983093e35789a049f1697b2ca624ce7d605a1ac2
+  data.tar.gz: 417c557bd12fa8c0ccbf79d0c315f4be3eee317cb3602d1640fd59a631d057cdde5473cc8e93e4173a90f1be91dd4afa555cb3d67ae2b7162771bd1a0c68c46a

data/lib/sushi_fabric/sushiApp.rb

@@ -1,6 +1,6 @@
 #!/usr/bin/env ruby
 # encoding: utf-8
-# Version = '20160715-153019'
+# Version = '20160930-163938'
 
 require 'csv'
 require 'fileutils'
@@ -477,7 +477,10 @@ rm -rf #{@scratch_dir} || exit 1
       headers = @dataset_hash.map{|row| row.keys}.flatten.uniq
       out << headers
       @dataset_hash.each do |row|
-        out << headers.map{|header| row[header]}
+        out << headers.map{|header| 
+          val = row[header]
+          val.to_s.empty? ? nil:val
+        }
       end
     end
     file_path
@@ -488,7 +491,10 @@ rm -rf #{@scratch_dir} || exit 1
     CSV.open(file_path, 'w', :col_sep=>"\t") do |out|
       out << headers
       @result_dataset.each do |row_hash|
-        out << headers.map{|header| row_hash[header]}
+        out << headers.map{|header| 
+          val = row_hash[header]
+          val.to_s.empty? ? nil:val
+        }
       end
     end
     file_path

data/lib/sushi_fabric/version.rb

@@ -1,3 +1,3 @@
 module SushiFabric
-  VERSION = "0.6.0"
+  VERSION = "0.6.1"
 end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: sushi_fabric
 version: !ruby/object:Gem::Version
-  version: 0.6.0
+  version: 0.6.1
 platform: ruby
 authors:
 - Functional Genomics Center Zurich
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2016-07-15 00:00:00.000000000 Z
+date: 2016-09-30 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: bundler