sushi_fabric 1.2.6 → 1.2.8

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checksums.yaml CHANGED
@@ -1,7 +1,7 @@
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@@ -1,6 +1,6 @@
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  #!/usr/bin/env ruby
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  # encoding: utf-8
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- # Version = '20240806-095335'
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+ # Version = '20240823-112404'
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  require 'csv'
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  require 'fileutils'
@@ -85,11 +85,6 @@ end
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  NO_ROR = true
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  end
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- class ::Array
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- def to_h
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- Hash[*flatten]
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- end
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- end
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  class ::Hash
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  attr_reader :defaults
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  alias :set :[]=
@@ -711,7 +706,11 @@ rm -rf #{@scratch_dir} || exit 1
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  @out.close
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  end
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  def sample_mode
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- selected_samples = Hash[*@params['samples'].split(',').map{|sample_name| [sample_name, true]}.flatten]
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+ selected_samples = unless @params['samples'].empty?
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+ Hash[*@params['samples'].split(',').map{|sample_name| [sample_name, true]}.flatten]
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+ else
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+ Hash[*@dataset_hash.map{|row| row['Name']}.map{|sample_name| [sample_name, true]}.flatten]
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+ end
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  @dataset_hash.each_with_index do |row, i|
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  @dataset = Hash[*row.map{|key,value| [key.gsub(/\[.+\]/,'').strip, value]}.flatten]
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  if selected_samples[@dataset['Name']]
@@ -1,3 +1,3 @@
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  module SushiFabric
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- VERSION = "1.2.6"
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+ VERSION = "1.2.8"
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  end
metadata CHANGED
@@ -1,14 +1,14 @@
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  --- !ruby/object:Gem::Specification
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  name: sushi_fabric
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  version: !ruby/object:Gem::Version
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- version: 1.2.6
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+ version: 1.2.8
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  platform: ruby
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  authors:
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  - Functional Genomics Center Zurich
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  autorequire:
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  bindir: bin
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  cert_chain: []
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- date: 2024-08-06 00:00:00.000000000 Z
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+ date: 2024-08-23 00:00:00.000000000 Z
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  dependencies:
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  - !ruby/object:Gem::Dependency
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  name: bundler