sushi_fabric 1.2.5 → 1.2.7

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA256:
-  metadata.gz: 68c7143037755247fc850a7c574aa720ab8aa4f39412f8e449d6236fd5d89d90
-  data.tar.gz: f0bd2e3063d60ce06367eb46df75a4af63fa9c5c7d8629c7d59e2190ea0a444b
+  metadata.gz: ca91b4760a0702f1033ca5d5a86027457f54efe902db6d2f5f487d18f8c426a4
+  data.tar.gz: c7fc11751f3c03bffb2ca5568fe218e7518f2dde19d4d836f53dd949af8e55a5
 SHA512:
-  metadata.gz: ebb89970779ede7d176f38bd6cad8de240b027cfca028eae28d0fc1c75793d1c2293f881040ddb8733bfd351f111e772d20eb7e8c833229366f557e0eb4beee6
-  data.tar.gz: c385481e909ce0e60a41d208dcb2271e5240cb94f3205b4e51990d038c939734200d5b3fa879c14f1b9831d3a35f34ff48eb1d9ce35b8524b14e00bab48c46fa
+  metadata.gz: 6030fa3cc94828ecc93e67111a20cde20709c61231a6f59765c1046b752048e92dc9a2e64c5f40f93e4c62be1dc67dce293493dddd06484decc6a7a5a8420ea0
+  data.tar.gz: 3798ab29d3ae60b3a7d473edffbff6d1aa4dcf523523659bf7e1f1a016c1738336232e5a502787f95363b694fbc2b5f06e748a3596e884af8e41e7956ea6651b

data/lib/sushi_fabric/sushiApp.rb

@@ -1,6 +1,6 @@
 #!/usr/bin/env ruby
 # encoding: utf-8
-# Version = '20240723-154553'
+# Version = '20240806-113507'
 
 require 'csv'
 require 'fileutils'
@@ -711,7 +711,11 @@ rm -rf #{@scratch_dir} || exit 1
     @out.close
   end
   def sample_mode
-    selected_samples = Hash[*@params['samples'].split(',').map{|sample_name| [sample_name, true]}.flatten]
+    selected_samples = unless @params['samples'].empty?
+                         Hash[*@params['samples'].split(',').map{|sample_name| [sample_name, true]}.flatten]
+                       else
+                         Hash[*@dataset_hash.map{|row| row['Name']}.map{|sample_name| [sample_name, true]}.flatten]
+                       end
     @dataset_hash.each_with_index do |row, i|
       @dataset = Hash[*row.map{|key,value| [key.gsub(/\[.+\]/,'').strip, value]}.flatten]
       if selected_samples[@dataset['Name']]
@@ -729,7 +733,11 @@ rm -rf #{@scratch_dir} || exit 1
     end
   end
   def dataset_mode
-    selected_samples = Hash[*@params['samples'].split(',').map{|sample_name| [sample_name, true]}.flatten]
+    selected_samples = unless @params['samples'].empty?
+                         Hash[*@params['samples'].split(',').map{|sample_name| [sample_name, true]}.flatten]
+                       else
+                         Hash[*@dataset_hash.map{|row| row['Name']}.map{|sample_name| [sample_name, true]}.flatten]
+                       end
     # for a case of @dataset is used in def next_datast in SUSHIApp
     @dataset = []
     @dataset_hash.each do |row|

data/lib/sushi_fabric/version.rb

@@ -1,3 +1,3 @@
 module SushiFabric
-  VERSION = "1.2.5"
+  VERSION = "1.2.7"
 end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: sushi_fabric
 version: !ruby/object:Gem::Version
-  version: 1.2.5
+  version: 1.2.7
 platform: ruby
 authors:
 - Functional Genomics Center Zurich
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2024-07-23 00:00:00.000000000 Z
+date: 2024-08-06 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: bundler