sushi_fabric 1.2.2 → 1.2.3

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA256:
-  metadata.gz: 18274b38a1b2b7a5c044435c9fb66406f865690b2807b01413d3fe349d1cdb90
-  data.tar.gz: 82d53f12e77604cc72b334103c0330e08b458ea4220579cd1f6284a4ee918bea
+  metadata.gz: 4330f4843df678b5bd74f9c43ac7abcf036dc2b47284c7301d1b93b2e386bf40
+  data.tar.gz: 7f1d59a9197e1c545fd8d3fdf9d98002fc05fd89ecd1651f62e6b238b43038e9
 SHA512:
-  metadata.gz: 9199dd3d05f40b71e86c1277dde1970200ff8c89e95547853e22acd66ad0ccdc8c7a6bf27fc1d2f6520796c26bc7adb569d1dc23cadff45ba20fc3db54c977ad
-  data.tar.gz: 534f1f1ea9e36c750255affed0925db10389fd9f27aacb13660e4638dc127c64f63f1b70b4fa15012c28514e46570c1488cc73efc0a9d4bdce9acd726f07a230
+  metadata.gz: 9f410544c24ec5ea2e8aa0815764cd1543d86ecc710aa514b224c724d698888acd4a2dc317889eeed02f36e300d66d9ed553641078aa5cb4b3eca193d8a838d8
+  data.tar.gz: b7eb98af2294187665b83c5d5594f988f9495b9831cc7d9da0d5513dfd4c9abd838080d9b33ca76d7a00d40923f0075458019ea1fae721008934540be6829883

data/lib/sushi_fabric/sushiApp.rb

@@ -1,6 +1,6 @@
 #!/usr/bin/env ruby
 # encoding: utf-8
-# Version = '20230623-165238'
+# Version = '20230623-175030'
 
 require 'csv'
 require 'fileutils'
@@ -349,7 +349,9 @@ class SushiApp
   end
   def check_application_parameters
     if @required_params and (@required_params - @params.keys).empty?
-      @output_params = {"sushi_app" => self.class.name}.merge(@params.clone)
+      # PD, 20230623, the following fix changed parameters.tsv info, and reverted
+      #@output_params = {"sushi_app" => self.class.name}.merge(@params.clone)
+      @output_params = @params.clone
     end
   end
   def set_user_parameters
@@ -588,6 +590,7 @@ rm -rf #{@scratch_dir} || exit 1
   def save_parameters_as_tsv
     file_path = File.join(@scratch_result_dir, @parameter_file)
     CSV.open(file_path, 'w', :col_sep=>"\t") do |out|
+      out << ["sushi_app", self.class.name]
       @output_params.each do |key, value|
         if @output_params[key, 'file_upload'] and !value.to_s.empty?
           uploaded_file_path = File.join(@result_dir, "uploaded", File.basename(value))

data/lib/sushi_fabric/version.rb

@@ -1,3 +1,3 @@
 module SushiFabric
-  VERSION = "1.2.2"
+  VERSION = "1.2.3"
 end

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: sushi_fabric
 version: !ruby/object:Gem::Version
-  version: 1.2.2
+  version: 1.2.3
 platform: ruby
 authors:
 - Functional Genomics Center Zurich