sushi_fabric 1.2.2 → 1.2.3

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checksums.yaml CHANGED
@@ -1,7 +1,7 @@
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  SHA256:
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  SHA512:
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@@ -1,6 +1,6 @@
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  #!/usr/bin/env ruby
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  # encoding: utf-8
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- # Version = '20230623-165238'
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+ # Version = '20230623-175030'
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  require 'csv'
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  require 'fileutils'
@@ -349,7 +349,9 @@ class SushiApp
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  end
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  def check_application_parameters
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  if @required_params and (@required_params - @params.keys).empty?
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- @output_params = {"sushi_app" => self.class.name}.merge(@params.clone)
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+ # PD, 20230623, the following fix changed parameters.tsv info, and reverted
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+ #@output_params = {"sushi_app" => self.class.name}.merge(@params.clone)
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+ @output_params = @params.clone
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  end
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  end
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  def set_user_parameters
@@ -588,6 +590,7 @@ rm -rf #{@scratch_dir} || exit 1
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  def save_parameters_as_tsv
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  file_path = File.join(@scratch_result_dir, @parameter_file)
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  CSV.open(file_path, 'w', :col_sep=>"\t") do |out|
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+ out << ["sushi_app", self.class.name]
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  @output_params.each do |key, value|
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  if @output_params[key, 'file_upload'] and !value.to_s.empty?
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  uploaded_file_path = File.join(@result_dir, "uploaded", File.basename(value))
@@ -1,3 +1,3 @@
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  module SushiFabric
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- VERSION = "1.2.2"
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+ VERSION = "1.2.3"
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  end
metadata CHANGED
@@ -1,7 +1,7 @@
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  --- !ruby/object:Gem::Specification
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  name: sushi_fabric
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  version: !ruby/object:Gem::Version
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- version: 1.2.2
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+ version: 1.2.3
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  platform: ruby
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  authors:
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  - Functional Genomics Center Zurich