sushi_fabric 1.1.8 → 1.1.9
Sign up to get free protection for your applications and to get access to all the features.
- checksums.yaml +4 -4
- data/lib/sushi_fabric/sushiApp.rb +8 -2
- data/lib/sushi_fabric/version.rb +1 -1
- metadata +3 -3
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
|
---
|
2
2
|
SHA256:
|
3
|
-
metadata.gz:
|
4
|
-
data.tar.gz:
|
3
|
+
metadata.gz: a1018e406de9a52abc0c904f94990e5370ae7791cb7460081b6d5f9d38b1292c
|
4
|
+
data.tar.gz: e70a1fa7f02f6947ec6752bcd65c55aae2151badc6797d16fa1024a5f13b248d
|
5
5
|
SHA512:
|
6
|
-
metadata.gz:
|
7
|
-
data.tar.gz:
|
6
|
+
metadata.gz: 2425522c912c4d289053d97027d8c53553f1fa0503c610db77b67db7ad4786865c642ea6d5f3d380c41f38df0b0371dd6bb6603927af98f54369e7b9062ac5cb
|
7
|
+
data.tar.gz: c165c1dd223dbbb9eb508576935d92e6254611cfabb19654085224a418d2980b9012fa2d8241ac0d6828e6c189718764f9db92e81b76c9c7c95aef5bf086e10d
|
@@ -1,6 +1,6 @@
|
|
1
1
|
#!/usr/bin/env ruby
|
2
2
|
# encoding: utf-8
|
3
|
-
# Version = '
|
3
|
+
# Version = '20230404-132741'
|
4
4
|
|
5
5
|
require 'csv'
|
6
6
|
require 'fileutils'
|
@@ -813,6 +813,7 @@ rm -rf #{@scratch_dir} || exit 1
|
|
813
813
|
end
|
814
814
|
def save_parameters_in_sushi_db
|
815
815
|
if @next_dataset_id and next_dataset = DataSet.find_by_id(@next_dataset_id)
|
816
|
+
@output_params['sushi_app'] = self.class
|
816
817
|
next_dataset.job_parameters = @output_params
|
817
818
|
next_dataset.save
|
818
819
|
end
|
@@ -851,7 +852,12 @@ rm -rf #{@scratch_dir} || exit 1
|
|
851
852
|
else
|
852
853
|
"#{@name.gsub(/\s/,'').gsub(/_/,'')}_#{dataset.id}"
|
853
854
|
end
|
854
|
-
data_set_arr =
|
855
|
+
data_set_arr = if @params['next_dataset_root']
|
856
|
+
{'DataSetName'=>next_dataset_name, 'ProjectNumber'=>@project.gsub(/p/,''), 'Comment'=>@next_dataset_comment.to_s}
|
857
|
+
else
|
858
|
+
{'DataSetName'=>next_dataset_name, 'ProjectNumber'=>@project.gsub(/p/,''), 'ParentID'=>@dataset_sushi_id, 'Comment'=>@next_dataset_comment.to_s}
|
859
|
+
end
|
860
|
+
|
855
861
|
csv = CSV.readlines(@next_dataset_tsv_path, :col_sep=>"\t")
|
856
862
|
csv.each do |row|
|
857
863
|
if headers.empty?
|
data/lib/sushi_fabric/version.rb
CHANGED
metadata
CHANGED
@@ -1,14 +1,14 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: sushi_fabric
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 1.1.
|
4
|
+
version: 1.1.9
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- Functional Genomics Center Zurich
|
8
8
|
autorequire:
|
9
9
|
bindir: bin
|
10
10
|
cert_chain: []
|
11
|
-
date:
|
11
|
+
date: 2023-04-04 00:00:00.000000000 Z
|
12
12
|
dependencies:
|
13
13
|
- !ruby/object:Gem::Dependency
|
14
14
|
name: bundler
|
@@ -84,7 +84,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
|
|
84
84
|
- !ruby/object:Gem::Version
|
85
85
|
version: '0'
|
86
86
|
requirements: []
|
87
|
-
rubygems_version: 3.
|
87
|
+
rubygems_version: 3.3.26
|
88
88
|
signing_key:
|
89
89
|
specification_version: 4
|
90
90
|
summary: workflow manager client.
|