sushi_fabric 1.0.6 → 1.0.7
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/sushi_fabric/sushiApp.rb +6 -7
- data/lib/sushi_fabric/version.rb +1 -1
- metadata +2 -2
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
|
---
|
2
2
|
SHA256:
|
3
|
-
metadata.gz:
|
4
|
-
data.tar.gz:
|
3
|
+
metadata.gz: 437c1a17818ce1c691886fface6c5395eae69d72024f542eb6497885814d7b82
|
4
|
+
data.tar.gz: d08bf18f1fd4d58285df67b682e134951afa6325a6192097b3ecd7b0d8f3b823
|
5
5
|
SHA512:
|
6
|
-
metadata.gz:
|
7
|
-
data.tar.gz:
|
6
|
+
metadata.gz: ab3b854e32de48cfe000dc4d524a3fb6a3998ca60b23ee3754f10755faee45b9e5c50de6d37e2ab48e91f3dbea415eb8675c4b30256bed7df297fac6ab98860f
|
7
|
+
data.tar.gz: 5b4ddc75fe749426e0765e5bca55fc41003387e46d9ac53317c1462552c71d5f82efebb3b93166128efd9e7a2784460ec4a1146eb77cd1314b25319cabfbfb96
|
@@ -1,6 +1,6 @@
|
|
1
1
|
#!/usr/bin/env ruby
|
2
2
|
# encoding: utf-8
|
3
|
-
# Version = '
|
3
|
+
# Version = '20210211-145021'
|
4
4
|
|
5
5
|
require 'csv'
|
6
6
|
require 'fileutils'
|
@@ -412,12 +412,11 @@ class SushiApp
|
|
412
412
|
else
|
413
413
|
@scratch_result_dir + '_temp$$'
|
414
414
|
end
|
415
|
-
hold_jid_option = if @dataset_sushi_id and parent_data_set = DataSet.find_by_id(@dataset_sushi_id.to_i) and !parent_data_set.jobs.empty?
|
416
|
-
|
417
|
-
|
418
|
-
|
419
|
-
|
420
|
-
end
|
415
|
+
hold_jid_option = if @dataset_sushi_id and parent_data_set = DataSet.find_by_id(@dataset_sushi_id.to_i) and !parent_data_set.jobs.empty? and parent_data_set_job_ids = parent_data_set.jobs.map{|job| job.submit_job_id} and !parent_data_set_job_ids.join.empty?
|
416
|
+
"#SBATCH --dependency=afterany:#{parent_data_set_job_ids.join(":")}"
|
417
|
+
else
|
418
|
+
''
|
419
|
+
end
|
421
420
|
module_src_command = if @module_source and @modules and !@modules.empty?
|
422
421
|
"source #{@module_source}"
|
423
422
|
else
|
data/lib/sushi_fabric/version.rb
CHANGED
metadata
CHANGED
@@ -1,14 +1,14 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: sushi_fabric
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 1.0.
|
4
|
+
version: 1.0.7
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- Functional Genomics Center Zurich
|
8
8
|
autorequire:
|
9
9
|
bindir: bin
|
10
10
|
cert_chain: []
|
11
|
-
date: 2021-02-
|
11
|
+
date: 2021-02-11 00:00:00.000000000 Z
|
12
12
|
dependencies:
|
13
13
|
- !ruby/object:Gem::Dependency
|
14
14
|
name: bundler
|